Wall clock time and date at job start Fri Apr 10 2020 22:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99890 * 2 1 4 4 H 1.48502 * 109.47018 * 239.99742 * 3 2 1 5 5 H 1.48503 * 109.47102 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46651 * 119.99939 * 3 2 1 7 7 C 1.38816 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99946 * 162.76475 * 7 2 1 9 9 N 1.36931 * 119.99584 * 343.04333 * 7 2 1 10 10 C 1.46926 * 120.63544 * 332.05021 * 9 7 2 11 11 C 1.53192 * 108.77281 * 233.58734 * 10 9 7 12 12 C 1.53034 * 109.31694 * 305.36145 * 11 10 9 13 13 H 1.08995 * 109.46191 * 301.34806 * 12 11 10 14 14 N 1.46500 * 109.46263 * 181.37220 * 12 11 10 15 15 C 1.34781 * 119.99808 * 85.00278 * 14 12 11 16 16 O 1.21280 * 119.99951 * 359.97438 * 15 14 12 17 17 C 1.50694 * 119.99926 * 180.02562 * 15 14 12 18 18 C 1.52996 * 109.47218 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47347 * 180.02562 * 18 17 15 20 20 C 1.54267 * 110.03304 * 292.16324 * 19 18 17 21 21 C 1.54883 * 104.19831 * 217.10722 * 20 19 18 22 22 C 1.54888 * 102.74818 * 37.93859 * 21 20 19 23 23 C 1.53875 * 110.03321 * 174.99481 * 19 18 17 24 24 C 1.53040 * 109.53593 * 61.36540 * 12 11 10 25 25 H 1.08999 * 109.49785 * 58.59151 * 24 12 11 26 26 O 1.42906 * 109.49786 * 178.64933 * 24 12 11 27 27 C 1.46934 * 120.62787 * 151.77333 * 9 7 2 28 28 H 0.97002 * 119.99822 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.58471 * 353.37333 * 10 9 7 30 30 H 1.08992 * 109.58613 * 113.79868 * 10 9 7 31 31 H 1.09004 * 109.49503 * 65.31731 * 11 10 9 32 32 H 1.09006 * 109.49655 * 185.37546 * 11 10 9 33 33 H 0.96994 * 120.00078 * 265.00053 * 14 12 11 34 34 H 1.09005 * 109.47226 * 299.99672 * 17 15 14 35 35 H 1.08998 * 109.47510 * 59.99332 * 17 15 14 36 36 H 1.09003 * 109.46690 * 299.99387 * 18 17 15 37 37 H 1.08991 * 109.47558 * 59.99624 * 18 17 15 38 38 H 1.09002 * 110.01684 * 53.60659 * 19 18 17 39 39 H 1.08998 * 110.48469 * 335.78930 * 20 19 18 40 40 H 1.09001 * 110.48363 * 98.42174 * 20 19 18 41 41 H 1.09008 * 110.75356 * 279.62784 * 21 20 19 42 42 H 1.08997 * 110.75688 * 156.25738 * 21 20 19 43 43 H 1.09001 * 110.48247 * 203.37974 * 22 21 20 44 44 H 1.09000 * 110.48395 * 80.74369 * 22 21 20 45 45 H 1.08998 * 110.03458 * 238.56818 * 23 19 18 46 46 H 1.09002 * 110.03273 * 0.02562 * 23 19 18 47 47 H 0.96701 * 113.99558 * 179.97438 * 26 24 12 48 48 H 1.09004 * 109.58630 * 246.20206 * 27 9 7 49 49 H 1.09005 * 109.58509 * 6.61946 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0539 -1.2233 -0.2766 9 7 1.3702 -2.3620 0.3469 10 6 0.2238 -2.3389 1.2656 11 6 0.4932 -3.3155 2.4147 12 6 0.8104 -4.6981 1.8403 13 1 -0.0279 -5.0402 1.2335 14 7 1.0363 -5.6423 2.9373 15 6 -0.0092 -6.2653 3.5164 16 8 -1.1371 -6.0437 3.1296 17 6 0.2232 -7.2362 4.6452 18 6 -1.1187 -7.7985 5.1186 19 6 -0.8828 -8.7838 6.2652 20 6 -0.1545 -10.0390 5.7419 21 6 -0.7834 -11.2052 6.5440 22 6 -2.2732 -10.7918 6.6370 23 6 -2.2299 -9.2624 6.8344 24 6 2.0679 -4.6152 0.9720 25 1 2.9010 -4.2496 1.5723 26 8 2.3813 -5.9127 0.4615 27 6 1.8130 -3.6528 -0.1978 28 1 -0.4850 0.8401 -0.0004 29 1 0.0951 -1.3325 1.6639 30 1 -0.6776 -2.6413 0.7327 31 1 1.3411 -2.9620 3.0014 32 1 -0.3888 -3.3795 3.0521 33 1 1.9384 -5.8193 3.2469 34 1 0.8565 -8.0525 4.2978 35 1 0.7140 -6.7220 5.4715 36 1 -1.7523 -6.9824 5.4660 37 1 -1.6090 -8.3128 4.2922 38 1 -0.2935 -8.3091 7.0497 39 1 -0.3360 -10.1683 4.6749 40 1 0.9148 -9.9709 5.9423 41 1 -0.3391 -11.2747 7.5371 42 1 -0.6765 -12.1466 6.0051 43 1 -2.7500 -11.2733 7.4908 44 1 -2.7969 -11.0429 5.7147 45 1 -2.2940 -9.0209 7.8953 46 1 -3.0517 -8.7931 6.2935 47 1 3.1688 -5.9349 -0.0992 48 1 1.0385 -4.0602 -0.8477 49 1 2.7331 -3.5135 -0.7655 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099644956.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:43 Heat of formation + Delta-G solvation = -119.001823 kcal Electronic energy + Delta-G solvation = -26283.680172 eV Core-core repulsion = 22629.777418 eV Total energy + Delta-G solvation = -3653.902754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.12566 -39.66911 -38.98194 -36.98212 -35.73541 -34.16003 -33.67681 -31.76534 -30.27628 -29.58656 -28.88396 -26.94960 -24.64906 -23.90740 -23.24872 -21.58851 -21.38553 -20.86184 -20.42099 -18.94709 -18.01615 -17.88783 -17.38395 -16.78204 -16.65624 -16.35947 -15.83916 -15.70780 -15.50322 -15.06452 -14.80565 -14.76972 -14.34633 -14.15687 -13.86190 -13.76097 -13.43894 -13.28188 -13.08377 -12.98106 -12.68647 -12.40472 -12.25561 -12.14822 -12.06560 -11.93379 -11.89544 -11.81933 -11.67432 -11.46846 -11.40205 -11.39074 -11.18460 -11.09423 -10.73733 -10.56342 -9.99065 -8.78073 -7.91164 -5.39412 1.47938 1.50642 1.57527 1.72690 2.23791 2.48626 3.12537 3.25843 3.62235 3.70402 3.72896 3.81697 3.87077 3.99686 4.05653 4.19705 4.22025 4.26897 4.38051 4.52313 4.60270 4.63098 4.67186 4.72929 4.74386 4.80620 4.83746 4.85889 4.92194 4.98442 5.02154 5.03252 5.10741 5.12298 5.23928 5.27118 5.32861 5.35893 5.44687 5.52179 5.54038 5.58647 5.62956 5.64023 6.32469 6.64997 6.88351 7.08163 7.36418 7.76436 8.29615 9.15950 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.029432 B = 0.002481 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.120418 B =11283.172833 C =11811.719669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.053 4.053 3 Si 0.973 3.027 4 H -0.272 1.272 5 H -0.298 1.298 6 H -0.274 1.274 7 C -0.266 4.266 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.128 4.128 12 C 0.169 3.831 13 H 0.049 0.951 14 N -0.706 5.706 15 C 0.502 3.498 16 O -0.595 6.595 17 C -0.127 4.127 18 C -0.092 4.092 19 C -0.087 4.087 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.127 4.127 23 C -0.126 4.126 24 C 0.103 3.897 25 H 0.075 0.925 26 O -0.571 6.571 27 C 0.116 3.884 28 H 0.251 0.749 29 H 0.063 0.937 30 H -0.012 1.012 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.414 0.586 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.052 0.948 47 H 0.396 0.604 48 H 0.009 0.991 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.295 -20.537 14.270 25.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.801 3.199 4 H -0.198 1.198 5 H -0.225 1.225 6 H -0.200 1.200 7 C -0.396 4.396 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.053 3.947 11 C -0.168 4.168 12 C 0.063 3.937 13 H 0.068 0.932 14 N -0.357 5.357 15 C 0.290 3.710 16 O -0.475 6.475 17 C -0.167 4.167 18 C -0.130 4.130 19 C -0.106 4.106 20 C -0.160 4.160 21 C -0.162 4.162 22 C -0.165 4.165 23 C -0.164 4.164 24 C 0.042 3.958 25 H 0.093 0.907 26 O -0.378 6.378 27 C -0.010 4.010 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.006 0.994 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.251 0.749 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.071 0.929 47 H 0.246 0.754 48 H 0.027 0.973 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.892 -20.424 14.309 25.240 hybrid contribution 0.442 1.429 -0.790 1.692 sum 4.334 -18.995 13.519 23.714 Atomic orbital electron populations 1.70208 1.07000 1.26163 1.54961 1.25934 0.96012 1.01986 1.00876 0.85262 0.77444 0.78663 0.78580 1.19800 1.22452 1.19958 1.19546 0.93178 0.85444 1.41451 0.90435 1.44272 1.35521 1.02319 1.50704 1.20546 0.87717 0.97703 0.88727 1.22301 1.01084 0.94584 0.98810 1.20580 0.96971 0.88691 0.87454 0.93241 1.45922 1.10432 1.43738 1.35612 1.21603 0.84100 0.81145 0.84110 1.90690 1.24979 1.66115 1.65756 1.21726 1.00723 0.98179 0.96025 1.21401 0.95523 0.98265 0.97843 1.21793 0.96663 0.95451 0.96652 1.22504 1.00106 0.93872 0.99511 1.22506 0.95000 0.98050 1.00597 1.22381 0.97324 0.95305 1.01497 1.22246 0.97015 0.96098 1.01000 1.22379 0.95735 0.83141 0.94517 0.90679 1.86452 1.52087 1.28597 1.70656 1.21798 0.98600 0.86354 0.94279 0.94017 0.91867 0.99388 0.91080 0.92706 0.74931 0.86642 0.86396 0.93167 0.93283 0.89692 0.92309 0.90252 0.90743 0.91342 0.91113 0.92479 0.91144 0.92924 0.75408 0.97284 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.09 11.18 21.65 0.24 -55.84 16 2 C -0.05 -2.91 4.92 84.86 0.42 -2.49 16 3 Si 0.97 43.99 29.59 68.60 2.03 46.02 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.27 -14.23 9.58 84.04 0.81 -13.42 16 8 H 0.08 3.90 7.89 -2.91 -0.02 3.87 16 9 N -0.60 -30.05 2.99 -698.25 -2.09 -32.14 16 10 C 0.18 9.06 5.30 86.36 0.46 9.52 16 11 C -0.13 -5.14 5.65 30.67 0.17 -4.97 16 12 C 0.17 6.09 2.12 45.02 0.10 6.18 16 13 H 0.05 2.17 7.58 -2.39 -0.02 2.16 16 14 N -0.71 -19.73 4.92 -442.42 -2.18 -21.91 16 15 C 0.50 14.85 7.79 87.65 0.68 15.53 16 16 O -0.59 -23.95 15.64 -3.03 -0.05 -23.99 16 17 C -0.13 -2.35 5.55 29.85 0.17 -2.18 16 18 C -0.09 -1.89 3.63 30.59 0.11 -1.78 16 19 C -0.09 -1.28 2.93 -10.07 -0.03 -1.31 16 20 C -0.12 -1.57 5.53 31.67 0.18 -1.39 16 21 C -0.12 -1.45 6.91 31.88 0.22 -1.23 16 22 C -0.13 -1.72 6.83 31.67 0.22 -1.51 16 23 C -0.13 -1.91 6.46 31.32 0.20 -1.71 16 24 C 0.10 3.33 3.16 30.82 0.10 3.42 16 25 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 26 O -0.57 -15.38 13.16 -148.98 -1.96 -17.34 16 27 C 0.12 4.69 6.17 86.50 0.53 5.22 16 28 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 29 H 0.06 3.55 6.04 -2.39 -0.01 3.54 16 30 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 31 H 0.07 2.67 8.14 -2.38 -0.02 2.66 16 32 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 33 H 0.41 8.54 8.60 -92.71 -0.80 7.74 16 34 H 0.12 1.62 7.51 -2.38 -0.02 1.60 16 35 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 37 H 0.05 1.20 7.96 -2.39 -0.02 1.19 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 0.88 7.76 -2.39 -0.02 0.86 16 40 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.05 0.94 7.67 -2.39 -0.02 0.92 16 47 H 0.40 6.95 9.09 -74.06 -0.67 6.28 16 48 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 49 H 0.08 2.80 7.93 -2.38 -0.02 2.78 16 Total: -1.00 -72.33 381.62 -0.21 -72.54 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: -0.54 Total: 24.78 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 4.32 Total: 7.88 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -4.02 Total: -109.89 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -2.01 Total: -41.34 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -72.33 -0.21 -72.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099644956.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.462 kcal (2) G-P(sol) polarization free energy of solvation -72.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds