Wall clock time and date at job start Fri Apr 10 2020 22:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47349 * 240.00037 * 3 2 1 5 5 H 1.48496 * 109.47097 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46949 * 120.00048 * 3 2 1 7 7 C 1.38817 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99776 * 197.35373 * 7 2 1 9 9 N 1.36942 * 120.00190 * 17.35684 * 7 2 1 10 10 C 1.46929 * 120.62734 * 27.67170 * 9 7 2 11 11 C 1.53194 * 108.77171 * 126.41579 * 10 9 7 12 12 C 1.53041 * 109.31168 * 54.63460 * 11 10 9 13 13 H 1.08997 * 109.45786 * 178.63029 * 12 11 10 14 14 N 1.46498 * 109.46354 * 58.65396 * 12 11 10 15 15 C 1.34778 * 120.00017 * 85.27204 * 14 12 11 16 16 O 1.21283 * 119.99977 * 359.72654 * 15 14 12 17 17 C 1.50701 * 120.00045 * 179.72803 * 15 14 12 18 18 C 1.53004 * 109.46924 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.46810 * 179.97438 * 18 17 15 20 20 C 1.54271 * 110.03423 * 292.16732 * 19 18 17 21 21 C 1.54886 * 104.19633 * 217.10710 * 20 19 18 22 22 C 1.54888 * 102.75053 * 37.94205 * 21 20 19 23 23 C 1.53876 * 110.03191 * 175.00025 * 19 18 17 24 24 C 1.53046 * 109.53985 * 298.63256 * 12 11 10 25 25 H 1.09000 * 109.49511 * 301.41970 * 24 12 11 26 26 O 1.42896 * 109.49795 * 181.31972 * 24 12 11 27 27 C 1.46924 * 120.63130 * 207.69684 * 9 7 2 28 28 H 0.97003 * 120.00091 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.58654 * 6.62775 * 10 9 7 30 30 H 1.08997 * 109.70103 * 246.27275 * 10 9 7 31 31 H 1.09003 * 109.50004 * 294.68437 * 11 10 9 32 32 H 1.08999 * 109.52270 * 174.60101 * 11 10 9 33 33 H 0.97003 * 120.00172 * 265.00436 * 14 12 11 34 34 H 1.08997 * 109.46672 * 299.99968 * 17 15 14 35 35 H 1.08995 * 109.46782 * 60.00171 * 17 15 14 36 36 H 1.08991 * 109.47128 * 300.00149 * 18 17 15 37 37 H 1.09004 * 109.46789 * 60.00277 * 18 17 15 38 38 H 1.08998 * 110.01736 * 53.60676 * 19 18 17 39 39 H 1.09003 * 110.48656 * 335.78713 * 20 19 18 40 40 H 1.08999 * 110.48605 * 98.42505 * 20 19 18 41 41 H 1.09002 * 110.75386 * 279.62799 * 21 20 19 42 42 H 1.09002 * 110.76131 * 156.25616 * 21 20 19 43 43 H 1.08999 * 110.48991 * 203.38480 * 22 21 20 44 44 H 1.09000 * 110.48838 * 80.73415 * 22 21 20 45 45 H 1.09000 * 110.03635 * 238.56965 * 23 19 18 46 46 H 1.08998 * 110.03175 * 359.95624 * 23 19 18 47 47 H 0.96707 * 113.99746 * 180.02562 * 26 24 12 48 48 H 1.09001 * 109.58186 * 353.37212 * 27 9 7 49 49 H 1.08996 * 109.58589 * 113.79118 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0534 -1.2236 0.2784 9 7 1.3722 -2.3610 -0.3548 10 6 0.2276 -2.3339 -1.2757 11 6 0.5004 -3.3036 -2.4299 12 6 0.8181 -4.6890 -1.8626 13 1 0.9888 -5.3866 -2.6825 14 7 -0.3096 -5.1549 -1.0519 15 6 -1.3483 -5.7815 -1.6392 16 8 -1.3517 -5.9552 -2.8395 17 6 -2.5056 -6.2663 -0.8045 18 6 -3.5411 -6.9373 -1.7091 19 6 -4.7157 -7.4300 -0.8615 20 6 -4.2603 -8.5881 0.0504 21 6 -5.4731 -9.5512 0.0756 22 6 -5.9991 -9.4767 -1.3794 23 6 -5.8212 -7.9950 -1.7706 24 6 2.0740 -4.6097 -0.9914 25 1 2.9077 -4.2395 -1.5880 26 8 2.3874 -5.9094 -0.4871 27 6 1.8190 -3.6549 0.1790 28 1 -0.4850 0.8401 0.0004 29 1 0.0984 -1.3254 -1.6684 30 1 -0.6759 -2.6390 -0.7478 31 1 1.3491 -2.9457 -3.0129 32 1 -0.3801 -3.3655 -3.0694 33 1 -0.3070 -5.0160 -0.0919 34 1 -2.1464 -6.9853 -0.0683 35 1 -2.9638 -5.4201 -0.2925 36 1 -3.9003 -6.2186 -2.4456 37 1 -3.0825 -7.7836 -2.2207 38 1 -5.1098 -6.6120 -0.2586 39 1 -3.3870 -9.0853 -0.3718 40 1 -4.0437 -8.2211 1.0536 41 1 -6.2296 -9.2014 0.7781 42 1 -5.1564 -10.5650 0.3203 43 1 -7.0513 -9.7581 -1.4196 44 1 -5.4066 -10.1174 -2.0325 45 1 -6.7521 -7.4517 -1.6083 46 1 -5.5213 -7.9175 -2.8156 47 1 3.1739 -5.9340 0.0751 48 1 2.7398 -3.5178 0.7460 49 1 1.0467 -4.0691 0.8271 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099644958.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:52 Heat of formation + Delta-G solvation = -94.911830 kcal Electronic energy + Delta-G solvation = -26756.171168 eV Core-core repulsion = 23103.313034 eV Total energy + Delta-G solvation = -3652.858133 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.86044 -38.64767 -37.73207 -35.44085 -33.99706 -33.11682 -31.69418 -30.21812 -28.94629 -28.70450 -27.82078 -25.33993 -23.50440 -22.27668 -21.82865 -20.91625 -20.22738 -19.64506 -18.68440 -17.17179 -16.88277 -16.44791 -16.02852 -15.43373 -15.17326 -15.00247 -14.91796 -14.25624 -14.00306 -13.73727 -13.60341 -13.48766 -13.21877 -12.74631 -12.66502 -12.27385 -12.11011 -11.95060 -11.66590 -11.35520 -11.27166 -11.19763 -11.15536 -10.89739 -10.87983 -10.76711 -10.66301 -10.60930 -10.42238 -10.39252 -10.20587 -9.96350 -9.82985 -9.43355 -9.38230 -8.56870 -8.49695 -6.79473 -5.88610 -3.32621 3.05869 3.32664 3.39363 3.40017 3.60312 4.35548 4.43439 4.48620 4.51785 4.60174 5.03456 5.05648 5.15500 5.26796 5.29766 5.32801 5.41041 5.45296 5.47403 5.50146 5.58383 5.59513 5.60954 5.70673 5.71480 5.76029 5.82268 5.94299 5.98277 6.03933 6.07679 6.14814 6.16231 6.27186 6.28754 6.41709 6.44675 6.56356 6.64635 6.70382 7.00687 7.26801 7.57874 7.69656 7.91299 7.96649 8.34036 8.65738 9.09701 9.72094 10.27482 11.19469 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019746 B = 0.002945 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.689688 B = 9506.132104 C =10141.096697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.587 5.587 10 C 0.173 3.827 11 C -0.153 4.153 12 C 0.166 3.834 13 H 0.077 0.923 14 N -0.707 5.707 15 C 0.512 3.488 16 O -0.555 6.555 17 C -0.141 4.141 18 C -0.093 4.093 19 C -0.094 4.094 20 C -0.122 4.122 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.122 4.122 24 C 0.075 3.925 25 H 0.065 0.935 26 O -0.571 6.571 27 C 0.119 3.881 28 H 0.256 0.744 29 H 0.089 0.911 30 H 0.021 0.979 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.401 0.599 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.373 0.627 48 H 0.058 0.942 49 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.919 -15.732 0.336 17.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.193 4.193 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.390 4.390 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.047 3.953 11 C -0.193 4.193 12 C 0.061 3.939 13 H 0.095 0.905 14 N -0.358 5.358 15 C 0.299 3.701 16 O -0.433 6.433 17 C -0.181 4.181 18 C -0.131 4.131 19 C -0.113 4.113 20 C -0.160 4.160 21 C -0.164 4.164 22 C -0.163 4.163 23 C -0.159 4.159 24 C 0.015 3.985 25 H 0.083 0.917 26 O -0.375 6.375 27 C -0.008 4.008 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.237 0.763 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.219 0.781 48 H 0.077 0.923 49 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -7.558 -15.845 -0.854 17.576 hybrid contribution 0.987 1.236 0.869 1.805 sum -6.571 -14.609 0.015 16.019 Atomic orbital electron populations 1.70021 1.05294 1.25840 1.53115 1.25048 0.95296 0.98506 1.00475 0.86347 0.78929 0.83163 0.78168 1.20930 1.21568 1.20845 1.19116 0.92685 0.84719 1.42433 0.91638 1.44004 1.35938 1.00857 1.50299 1.20777 0.88437 0.98368 0.87698 1.22580 1.01423 0.94890 1.00411 1.20791 0.83956 0.96301 0.92881 0.90526 1.45978 1.19818 1.58368 1.11596 1.20626 0.83584 0.77312 0.88613 1.90649 1.79774 1.57696 1.15222 1.21698 0.95129 1.01987 0.99315 1.21436 0.93965 1.00599 0.97106 1.21832 0.95277 0.97745 0.96408 1.22496 0.97967 0.95979 0.99543 1.22500 0.97776 0.99308 0.96777 1.22359 1.00562 0.96758 0.96589 1.22211 0.98340 0.95541 0.99831 1.22751 0.96236 0.82900 0.96661 0.91715 1.86484 1.50482 1.30319 1.70231 1.21528 0.98422 0.87719 0.93175 0.93434 0.89297 0.96062 0.91628 0.91905 0.76340 0.89248 0.89015 0.91253 0.91317 0.90955 0.91387 0.91690 0.91690 0.91877 0.92054 0.91760 0.92005 0.91535 0.78062 0.92338 0.95984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.25 11.19 55.49 0.62 -24.63 16 2 C 0.01 0.16 4.91 -17.43 -0.09 0.08 16 3 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.26 -6.81 9.59 -15.06 -0.14 -6.96 16 8 H 0.07 1.67 7.89 -52.48 -0.41 1.26 16 9 N -0.59 -13.83 3.00 -172.32 -0.52 -14.35 16 10 C 0.17 3.99 5.05 -3.71 -0.02 3.97 16 11 C -0.15 -3.03 5.77 -26.61 -0.15 -3.18 16 12 C 0.17 3.00 2.47 -67.89 -0.17 2.83 16 13 H 0.08 1.47 7.57 -51.93 -0.39 1.08 16 14 N -0.71 -11.86 4.16 -53.76 -0.22 -12.09 16 15 C 0.51 8.49 7.80 -10.98 -0.09 8.41 16 16 O -0.55 -10.98 15.64 5.55 0.09 -10.90 16 17 C -0.14 -1.75 5.55 -27.88 -0.15 -1.91 16 18 C -0.09 -1.10 3.63 -26.73 -0.10 -1.20 16 19 C -0.09 -0.91 2.93 -89.50 -0.26 -1.17 16 20 C -0.12 -1.08 5.53 -25.07 -0.14 -1.22 16 21 C -0.13 -1.00 6.91 -24.74 -0.17 -1.17 16 22 C -0.13 -1.01 6.83 -25.07 -0.17 -1.18 16 23 C -0.12 -1.09 6.46 -25.61 -0.17 -1.26 16 24 C 0.08 1.28 3.36 -26.61 -0.09 1.19 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 O -0.57 -8.54 13.21 -35.23 -0.47 -9.00 16 27 C 0.12 2.28 5.84 -3.71 -0.02 2.26 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.09 2.34 6.04 -51.93 -0.31 2.02 16 30 H 0.02 0.51 7.74 -51.93 -0.40 0.11 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.40 6.43 6.87 -40.82 -0.28 6.15 16 34 H 0.09 0.96 7.51 -51.93 -0.39 0.57 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 37 H 0.07 0.87 7.96 -51.93 -0.41 0.46 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.63 7.76 -51.93 -0.40 0.23 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.63 7.67 -51.93 -0.40 0.23 16 47 H 0.37 3.98 9.08 45.56 0.41 4.40 16 48 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 49 H 0.02 0.43 6.64 -51.93 -0.34 0.08 16 LS Contribution 377.36 15.07 5.69 5.69 Total: -1.00 -30.55 377.36 -9.72 -40.27 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -7.96 Total: 9.47 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -1.93 Total: -0.50 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.12 Total: -51.06 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.38 Total: -19.90 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.55 -9.72 -40.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099644958.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.639 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds