Wall clock time and date at job start Fri Apr 10 2020 22:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47349 * 240.00037 * 3 2 1 5 5 H 1.48496 * 109.47097 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46949 * 120.00048 * 3 2 1 7 7 C 1.38817 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99776 * 197.35373 * 7 2 1 9 9 N 1.36942 * 120.00190 * 17.35684 * 7 2 1 10 10 C 1.46929 * 120.62734 * 27.67170 * 9 7 2 11 11 C 1.53194 * 108.77171 * 126.41579 * 10 9 7 12 12 C 1.53041 * 109.31168 * 54.63460 * 11 10 9 13 13 H 1.08997 * 109.45786 * 178.63029 * 12 11 10 14 14 N 1.46498 * 109.46354 * 58.65396 * 12 11 10 15 15 C 1.34778 * 120.00017 * 85.27204 * 14 12 11 16 16 O 1.21283 * 119.99977 * 359.72654 * 15 14 12 17 17 C 1.50701 * 120.00045 * 179.72803 * 15 14 12 18 18 C 1.53004 * 109.46924 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.46810 * 179.97438 * 18 17 15 20 20 C 1.54271 * 110.03423 * 292.16732 * 19 18 17 21 21 C 1.54886 * 104.19633 * 217.10710 * 20 19 18 22 22 C 1.54888 * 102.75053 * 37.94205 * 21 20 19 23 23 C 1.53876 * 110.03191 * 175.00025 * 19 18 17 24 24 C 1.53046 * 109.53985 * 298.63256 * 12 11 10 25 25 H 1.09000 * 109.49511 * 301.41970 * 24 12 11 26 26 O 1.42896 * 109.49795 * 181.31972 * 24 12 11 27 27 C 1.46924 * 120.63130 * 207.69684 * 9 7 2 28 28 H 0.97003 * 120.00091 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.58654 * 6.62775 * 10 9 7 30 30 H 1.08997 * 109.70103 * 246.27275 * 10 9 7 31 31 H 1.09003 * 109.50004 * 294.68437 * 11 10 9 32 32 H 1.08999 * 109.52270 * 174.60101 * 11 10 9 33 33 H 0.97003 * 120.00172 * 265.00436 * 14 12 11 34 34 H 1.08997 * 109.46672 * 299.99968 * 17 15 14 35 35 H 1.08995 * 109.46782 * 60.00171 * 17 15 14 36 36 H 1.08991 * 109.47128 * 300.00149 * 18 17 15 37 37 H 1.09004 * 109.46789 * 60.00277 * 18 17 15 38 38 H 1.08998 * 110.01736 * 53.60676 * 19 18 17 39 39 H 1.09003 * 110.48656 * 335.78713 * 20 19 18 40 40 H 1.08999 * 110.48605 * 98.42505 * 20 19 18 41 41 H 1.09002 * 110.75386 * 279.62799 * 21 20 19 42 42 H 1.09002 * 110.76131 * 156.25616 * 21 20 19 43 43 H 1.08999 * 110.48991 * 203.38480 * 22 21 20 44 44 H 1.09000 * 110.48838 * 80.73415 * 22 21 20 45 45 H 1.09000 * 110.03635 * 238.56965 * 23 19 18 46 46 H 1.08998 * 110.03175 * 359.95624 * 23 19 18 47 47 H 0.96707 * 113.99746 * 180.02562 * 26 24 12 48 48 H 1.09001 * 109.58186 * 353.37212 * 27 9 7 49 49 H 1.08996 * 109.58589 * 113.79118 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0534 -1.2236 0.2784 9 7 1.3722 -2.3610 -0.3548 10 6 0.2276 -2.3339 -1.2757 11 6 0.5004 -3.3036 -2.4299 12 6 0.8181 -4.6890 -1.8626 13 1 0.9888 -5.3866 -2.6825 14 7 -0.3096 -5.1549 -1.0519 15 6 -1.3483 -5.7815 -1.6392 16 8 -1.3517 -5.9552 -2.8395 17 6 -2.5056 -6.2663 -0.8045 18 6 -3.5411 -6.9373 -1.7091 19 6 -4.7157 -7.4300 -0.8615 20 6 -4.2603 -8.5881 0.0504 21 6 -5.4731 -9.5512 0.0756 22 6 -5.9991 -9.4767 -1.3794 23 6 -5.8212 -7.9950 -1.7706 24 6 2.0740 -4.6097 -0.9914 25 1 2.9077 -4.2395 -1.5880 26 8 2.3874 -5.9094 -0.4871 27 6 1.8190 -3.6549 0.1790 28 1 -0.4850 0.8401 0.0004 29 1 0.0984 -1.3254 -1.6684 30 1 -0.6759 -2.6390 -0.7478 31 1 1.3491 -2.9457 -3.0129 32 1 -0.3801 -3.3655 -3.0694 33 1 -0.3070 -5.0160 -0.0919 34 1 -2.1464 -6.9853 -0.0683 35 1 -2.9638 -5.4201 -0.2925 36 1 -3.9003 -6.2186 -2.4456 37 1 -3.0825 -7.7836 -2.2207 38 1 -5.1098 -6.6120 -0.2586 39 1 -3.3870 -9.0853 -0.3718 40 1 -4.0437 -8.2211 1.0536 41 1 -6.2296 -9.2014 0.7781 42 1 -5.1564 -10.5650 0.3203 43 1 -7.0513 -9.7581 -1.4196 44 1 -5.4066 -10.1174 -2.0325 45 1 -6.7521 -7.4517 -1.6083 46 1 -5.5213 -7.9175 -2.8156 47 1 3.1739 -5.9340 0.0751 48 1 2.7398 -3.5178 0.7460 49 1 1.0467 -4.0691 0.8271 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099644958.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:51 Heat of formation + Delta-G solvation = -114.511314 kcal Electronic energy + Delta-G solvation = -26757.021065 eV Core-core repulsion = 23103.313034 eV Total energy + Delta-G solvation = -3653.708031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.24571 -39.68278 -38.93454 -36.94454 -35.57069 -34.12498 -33.44189 -31.84965 -30.28221 -29.58409 -28.81692 -27.14527 -24.62701 -23.82577 -23.52691 -21.79268 -21.29974 -20.45283 -20.24794 -18.85530 -18.15597 -17.91838 -17.00908 -16.84020 -16.49076 -16.42140 -15.97553 -15.71569 -15.59800 -15.10458 -14.91578 -14.73408 -14.25578 -14.15118 -13.86440 -13.57369 -13.51084 -13.24076 -13.10214 -12.98092 -12.71252 -12.36770 -12.26156 -12.23041 -11.98205 -11.92973 -11.84245 -11.82157 -11.67777 -11.46680 -11.41067 -11.29757 -11.18460 -11.03272 -10.74173 -10.50221 -9.97726 -8.71462 -7.89486 -5.35213 1.47751 1.50767 1.56560 1.73574 2.30432 2.49653 3.15402 3.26884 3.66193 3.70304 3.73192 3.81104 3.89395 4.00839 4.06804 4.20977 4.23552 4.26952 4.37841 4.52531 4.60294 4.62894 4.67311 4.71508 4.73855 4.79607 4.85138 4.87752 4.92132 4.98325 5.02962 5.04662 5.12899 5.14085 5.23905 5.26071 5.32531 5.40860 5.44556 5.52476 5.57252 5.61590 5.63535 5.69897 6.35052 6.63021 6.88568 7.11773 7.32866 7.80831 8.31938 9.16555 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019746 B = 0.002945 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.689688 B = 9506.132104 C =10141.096697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.046 4.046 3 Si 0.965 3.035 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.274 1.274 7 C -0.266 4.266 8 H 0.072 0.928 9 N -0.602 5.602 10 C 0.186 3.814 11 C -0.140 4.140 12 C 0.167 3.833 13 H 0.070 0.930 14 N -0.704 5.704 15 C 0.506 3.494 16 O -0.590 6.590 17 C -0.133 4.133 18 C -0.087 4.087 19 C -0.090 4.090 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.125 4.125 23 C -0.124 4.124 24 C 0.096 3.904 25 H 0.067 0.933 26 O -0.570 6.570 27 C 0.119 3.881 28 H 0.250 0.750 29 H 0.053 0.947 30 H 0.006 0.994 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.406 0.594 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.056 0.944 47 H 0.395 0.605 48 H 0.069 0.931 49 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.380 -17.047 1.514 18.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.242 4.242 3 Si 0.793 3.207 4 H -0.206 1.206 5 H -0.224 1.224 6 H -0.199 1.199 7 C -0.395 4.395 8 H 0.090 0.910 9 N -0.326 5.326 10 C 0.061 3.939 11 C -0.180 4.180 12 C 0.062 3.938 13 H 0.088 0.912 14 N -0.355 5.355 15 C 0.295 3.705 16 O -0.471 6.471 17 C -0.172 4.172 18 C -0.125 4.125 19 C -0.109 4.109 20 C -0.160 4.160 21 C -0.161 4.161 22 C -0.162 4.162 23 C -0.162 4.162 24 C 0.035 3.965 25 H 0.085 0.915 26 O -0.377 6.377 27 C -0.007 4.007 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.024 0.976 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.243 0.757 34 H 0.131 0.869 35 H 0.121 0.879 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.075 0.925 47 H 0.245 0.755 48 H 0.087 0.913 49 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -6.984 -17.195 0.356 18.562 hybrid contribution 0.848 1.582 0.505 1.865 sum -6.136 -15.613 0.861 16.797 Atomic orbital electron populations 1.70165 1.06628 1.25953 1.54865 1.25762 0.95975 1.01448 1.01061 0.85382 0.77586 0.79372 0.78333 1.20615 1.22357 1.19913 1.19471 0.93114 0.85789 1.41171 0.91042 1.44170 1.35767 1.01902 1.50810 1.20460 0.88086 0.97022 0.88377 1.22381 1.01166 0.95393 0.99050 1.20648 0.85198 0.94681 0.93294 0.91211 1.45976 1.19641 1.58198 1.11698 1.21377 0.84126 0.76477 0.88548 1.90632 1.80495 1.59036 1.16973 1.21728 0.93534 1.02845 0.99110 1.21365 0.94575 0.99581 0.96961 1.21805 0.94451 0.98296 0.96339 1.22500 0.98198 0.95724 0.99587 1.22504 0.97461 0.99538 0.96626 1.22368 1.01231 0.95873 0.96772 1.22231 0.98353 0.96441 0.99170 1.22332 0.95582 0.83278 0.95355 0.91502 1.86453 1.51999 1.28528 1.70752 1.21667 0.98811 0.86121 0.94096 0.94121 0.92891 0.97637 0.91501 0.92600 0.75738 0.86894 0.87875 0.93123 0.92511 0.90508 0.91925 0.90850 0.91041 0.91094 0.91036 0.92061 0.91393 0.92518 0.75495 0.91278 0.95471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.27 11.19 21.65 0.24 -53.03 16 2 C -0.05 -2.50 4.91 84.86 0.42 -2.08 16 3 Si 0.96 43.40 29.59 68.60 2.03 45.43 16 4 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 5 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.27 -13.77 9.59 84.03 0.81 -12.96 16 8 H 0.07 3.56 7.89 -2.91 -0.02 3.53 16 9 N -0.60 -28.11 3.00 -699.11 -2.09 -30.21 16 10 C 0.19 8.75 5.05 86.36 0.44 9.18 16 11 C -0.14 -5.56 5.77 30.67 0.18 -5.39 16 12 C 0.17 5.92 2.47 45.02 0.11 6.03 16 13 H 0.07 2.62 7.57 -2.39 -0.02 2.60 16 14 N -0.70 -23.00 4.16 -442.40 -1.84 -24.84 16 15 C 0.51 16.54 7.80 87.66 0.68 17.23 16 16 O -0.59 -23.55 15.64 -3.04 -0.05 -23.60 16 17 C -0.13 -3.12 5.55 29.85 0.17 -2.96 16 18 C -0.09 -2.01 3.63 30.59 0.11 -1.90 16 19 C -0.09 -1.63 2.93 -10.07 -0.03 -1.66 16 20 C -0.12 -1.92 5.53 31.67 0.18 -1.75 16 21 C -0.12 -1.70 6.91 31.88 0.22 -1.48 16 22 C -0.12 -1.83 6.83 31.67 0.22 -1.62 16 23 C -0.12 -2.12 6.46 31.32 0.20 -1.92 16 24 C 0.10 3.05 3.36 30.67 0.10 3.16 16 25 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 26 O -0.57 -15.32 13.21 -148.98 -1.97 -17.29 16 27 C 0.12 4.36 5.84 86.36 0.50 4.87 16 28 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 29 H 0.05 2.87 6.04 -2.39 -0.01 2.86 16 30 H 0.01 0.27 7.74 -2.39 -0.02 0.26 16 31 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.41 12.43 6.87 -92.71 -0.64 11.79 16 34 H 0.11 2.16 7.51 -2.39 -0.02 2.14 16 35 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 37 H 0.06 1.44 7.96 -2.38 -0.02 1.43 16 38 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.05 7.76 -2.39 -0.02 1.04 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.06 1.07 7.67 -2.39 -0.02 1.05 16 47 H 0.40 6.98 9.08 -74.05 -0.67 6.31 16 48 H 0.07 2.38 7.93 -2.39 -0.02 2.36 16 49 H 0.03 0.99 6.64 -2.39 -0.02 0.97 16 Total: -1.00 -65.64 377.36 0.25 -65.39 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: -0.37 Total: 31.37 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 4.30 Total: 6.76 kcal Atomic # 7 Polarization: -104.38 SS G_CDS: -3.69 Total: -108.07 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -2.02 Total: -40.89 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -65.64 0.25 -65.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099644958.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.118 kcal (2) G-P(sol) polarization free energy of solvation -65.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds