Wall clock time and date at job start Fri Apr 10 2020 22:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00339 * 2 1 4 4 H 1.48494 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46755 * 299.99892 * 3 2 1 6 6 H 1.48499 * 109.47057 * 59.99752 * 3 2 1 7 7 C 1.38815 * 119.99381 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99560 * 163.07676 * 7 2 1 9 9 N 1.36932 * 120.00211 * 343.07350 * 7 2 1 10 10 C 1.46936 * 120.62765 * 151.81455 * 9 7 2 11 11 C 1.53188 * 108.77533 * 126.41406 * 10 9 7 12 12 C 1.53049 * 109.31282 * 54.63182 * 11 10 9 13 13 H 1.09003 * 109.44551 * 58.64849 * 12 11 10 14 14 N 1.46498 * 109.45943 * 178.61314 * 12 11 10 15 15 C 1.34774 * 120.00116 * 275.06940 * 14 12 11 16 16 O 1.21285 * 119.99938 * 359.97438 * 15 14 12 17 17 C 1.50701 * 120.00257 * 180.02562 * 15 14 12 18 18 C 1.52998 * 109.47452 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47131 * 180.02562 * 18 17 15 20 20 C 1.54883 * 110.59947 * 68.31864 * 19 18 17 21 21 C 1.54887 * 102.74847 * 156.67776 * 20 19 18 22 22 C 1.54268 * 104.19673 * 322.05590 * 21 20 19 23 23 C 1.53873 * 106.59848 * 23.60836 * 22 21 20 24 24 C 1.53035 * 109.53950 * 298.63693 * 12 11 10 25 25 H 1.09000 * 109.49855 * 301.41501 * 24 12 11 26 26 O 1.42903 * 109.49721 * 181.31522 * 24 12 11 27 27 C 1.46923 * 120.63495 * 331.83598 * 9 7 2 28 28 H 0.97004 * 119.99630 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.58082 * 246.19884 * 10 9 7 30 30 H 1.08998 * 109.58316 * 6.48257 * 10 9 7 31 31 H 1.08995 * 109.49797 * 294.68359 * 11 10 9 32 32 H 1.08995 * 109.49904 * 174.58151 * 11 10 9 33 33 H 0.96994 * 120.00130 * 95.07477 * 14 12 11 34 34 H 1.08997 * 109.46831 * 59.99833 * 17 15 14 35 35 H 1.09000 * 109.46553 * 300.00302 * 17 15 14 36 36 H 1.09005 * 109.47076 * 59.99839 * 18 17 15 37 37 H 1.08998 * 109.46715 * 300.00047 * 18 17 15 38 38 H 1.08995 * 110.43325 * 305.69512 * 19 18 17 39 39 H 1.08998 * 110.75510 * 274.98832 * 20 19 18 40 40 H 1.09000 * 110.76145 * 38.36118 * 20 19 18 41 41 H 1.09002 * 110.48799 * 203.37591 * 21 20 19 42 42 H 1.08999 * 110.49158 * 80.73295 * 21 20 19 43 43 H 1.09004 * 110.03003 * 264.32879 * 22 21 20 44 44 H 1.08999 * 110.07611 * 142.92026 * 22 21 20 45 45 H 1.09000 * 110.03500 * 240.72001 * 23 22 21 46 46 H 1.08998 * 110.07556 * 119.30612 * 23 22 21 47 47 H 0.96703 * 113.99859 * 180.02562 * 26 24 12 48 48 H 1.09003 * 109.58788 * 113.79564 * 27 9 7 49 49 H 1.09001 * 109.58394 * 353.37851 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2226 -0.2717 9 7 1.3699 -2.3622 0.3463 10 6 1.8135 -3.6530 -0.1979 11 6 2.0672 -4.6174 0.9649 12 6 0.8118 -4.7007 1.8364 13 1 -0.0284 -5.0407 1.2309 14 7 1.0395 -5.6475 2.9309 15 6 0.8359 -6.9654 2.7352 16 8 0.4638 -7.3674 1.6531 17 6 1.0695 -7.9393 3.8612 18 6 0.7685 -9.3594 3.3780 19 6 1.0051 -10.3481 4.5214 20 6 -0.0525 -10.1550 5.6363 21 6 -0.0574 -11.5323 6.3450 22 6 0.1088 -12.5491 5.1968 23 6 0.7844 -11.7962 4.0373 24 6 0.4975 -3.3191 2.4146 25 1 1.3473 -2.9676 2.9996 26 8 -0.6569 -3.4041 3.2526 27 6 0.2261 -2.3399 1.2681 28 1 -0.4850 0.8401 -0.0004 29 1 1.0397 -4.0605 -0.8485 30 1 2.7328 -3.5131 -0.7667 31 1 2.9022 -4.2537 1.5636 32 1 2.3038 -5.6063 0.5724 33 1 1.3366 -5.3260 3.7964 34 1 0.4142 -7.6928 4.6966 35 1 2.1087 -7.8785 4.1844 36 1 1.4241 -9.6056 2.5427 37 1 -0.2706 -9.4205 3.0545 38 1 2.0107 -10.2299 4.9247 39 1 0.2521 -9.3672 6.3253 40 1 -1.0308 -9.9377 5.2075 41 1 -1.0037 -11.6919 6.8619 42 1 0.7766 -11.6053 7.0429 43 1 -0.8667 -12.9205 4.8828 44 1 0.7376 -13.3788 5.5200 45 1 0.1367 -11.8022 3.1606 46 1 1.7413 -12.2596 3.7974 47 1 -0.9146 -2.5627 3.6536 48 1 -0.6771 -2.6403 0.7371 49 1 0.0994 -1.3341 1.6688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099644959.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:56 Heat of formation + Delta-G solvation = -98.400591 kcal Electronic energy + Delta-G solvation = -26259.387956 eV Core-core repulsion = 22606.378538 eV Total energy + Delta-G solvation = -3653.009417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.83353 -38.62991 -37.76362 -35.26907 -34.29982 -33.29152 -32.11113 -29.70271 -29.00319 -28.87783 -28.01135 -25.20283 -23.50993 -22.34432 -21.66440 -20.72577 -20.01725 -19.96698 -19.33682 -17.21595 -16.60888 -16.53351 -16.19469 -15.74535 -15.48205 -15.01736 -14.82506 -13.98564 -13.93648 -13.75957 -13.62301 -13.47723 -13.32219 -12.89303 -12.66410 -12.25095 -12.18257 -11.91899 -11.67031 -11.52503 -11.41205 -11.26015 -11.21316 -10.97164 -10.85858 -10.83767 -10.77269 -10.70054 -10.53297 -10.39597 -10.19558 -10.02588 -9.78787 -9.49142 -9.29404 -8.70430 -8.52940 -6.78309 -5.88009 -3.31923 2.91122 3.30888 3.39714 3.41813 3.45248 4.31582 4.38517 4.40281 4.47806 4.59856 4.88947 4.92789 5.03728 5.20156 5.26854 5.29375 5.33864 5.39595 5.40618 5.43556 5.45141 5.51483 5.59168 5.62397 5.64431 5.73210 5.85061 5.91382 5.92107 6.00983 6.01820 6.06810 6.10133 6.15822 6.25169 6.30732 6.45707 6.50095 6.70824 6.89546 6.91516 7.11725 7.45039 7.71430 7.81543 8.09453 8.35415 8.52105 9.10458 9.73182 10.29794 11.20418 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.038182 B = 0.002378 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.161119 B =11770.962124 C =12092.282552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.069 0.931 9 N -0.589 5.589 10 C 0.144 3.856 11 C -0.138 4.138 12 C 0.162 3.838 13 H 0.086 0.914 14 N -0.718 5.718 15 C 0.509 3.491 16 O -0.547 6.547 17 C -0.140 4.140 18 C -0.095 4.095 19 C -0.093 4.093 20 C -0.123 4.123 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.122 4.122 24 C 0.072 3.928 25 H 0.051 0.949 26 O -0.573 6.573 27 C 0.148 3.852 28 H 0.255 0.745 29 H 0.023 0.977 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.396 0.604 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.375 0.625 48 H 0.029 0.971 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.865 -18.547 13.376 22.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.179 4.179 12 C 0.057 3.943 13 H 0.104 0.896 14 N -0.367 5.367 15 C 0.295 3.705 16 O -0.424 6.424 17 C -0.180 4.180 18 C -0.133 4.133 19 C -0.112 4.112 20 C -0.160 4.160 21 C -0.163 4.163 22 C -0.163 4.163 23 C -0.159 4.159 24 C 0.011 3.989 25 H 0.069 0.931 26 O -0.378 6.378 27 C 0.021 3.979 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.229 0.771 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.222 0.778 48 H 0.047 0.953 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.520 -19.320 12.391 23.002 hybrid contribution 0.522 1.724 0.603 1.900 sum 2.042 -17.596 12.994 21.969 Atomic orbital electron populations 1.70044 1.05270 1.25574 1.53715 1.25103 0.95338 0.98583 1.00691 0.86202 0.79383 0.83737 0.77337 1.20181 1.21624 1.21523 1.19246 0.92698 0.84569 1.41881 0.91336 1.44018 1.35696 1.01946 1.49678 1.20946 0.98236 0.86329 0.92729 1.22398 0.96713 1.00128 0.98617 1.20958 0.98547 0.86972 0.87774 0.89573 1.46141 1.68593 1.06529 1.15451 1.20678 0.77056 0.83100 0.89673 1.90689 1.46475 1.78397 1.26877 1.21696 1.03527 0.95045 0.97730 1.21367 1.03012 0.91606 0.97295 1.22047 0.99201 0.94444 0.95459 1.22614 0.99351 0.96854 0.97194 1.22357 1.01397 0.95101 0.97484 1.22134 1.00535 0.98038 0.95597 1.22197 1.00593 0.94886 0.98257 1.22972 0.86998 0.95606 0.93296 0.93114 1.86416 1.48397 1.36767 1.66176 1.21411 0.89834 0.98094 0.88538 0.93536 0.95873 0.92128 0.92101 0.91873 0.77079 0.89119 0.89329 0.91225 0.91117 0.90840 0.91588 0.91247 0.91899 0.91827 0.92007 0.92156 0.91529 0.91990 0.77801 0.95266 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.54 11.20 55.49 0.62 -24.92 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.08 29.59 -169.99 -5.03 16.06 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.80 9.58 -15.06 -0.14 -6.94 16 8 H 0.07 1.80 7.89 -52.49 -0.41 1.38 16 9 N -0.59 -14.48 2.99 -172.31 -0.52 -14.99 16 10 C 0.14 3.07 6.52 -3.71 -0.02 3.05 16 11 C -0.14 -2.52 5.65 -26.61 -0.15 -2.67 16 12 C 0.16 2.94 2.12 -67.89 -0.14 2.80 16 13 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 14 N -0.72 -10.67 4.92 -53.76 -0.26 -10.93 16 15 C 0.51 7.62 7.79 -10.99 -0.09 7.53 16 16 O -0.55 -10.41 15.65 5.55 0.09 -10.32 16 17 C -0.14 -1.44 5.56 -27.88 -0.16 -1.59 16 18 C -0.09 -0.98 3.86 -26.73 -0.10 -1.08 16 19 C -0.09 -0.76 2.87 -88.96 -0.26 -1.01 16 20 C -0.12 -0.94 5.60 -24.74 -0.14 -1.07 16 21 C -0.13 -0.87 6.83 -25.07 -0.17 -1.04 16 22 C -0.13 -0.89 6.80 -25.61 -0.17 -1.06 16 23 C -0.12 -0.96 6.37 -25.61 -0.16 -1.12 16 24 C 0.07 1.35 3.14 -26.61 -0.08 1.26 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 O -0.57 -9.78 13.16 -35.23 -0.46 -10.24 16 27 C 0.15 3.44 4.93 -3.71 -0.02 3.42 16 28 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.40 4.88 8.60 -40.82 -0.35 4.53 16 34 H 0.09 0.81 7.48 -51.93 -0.39 0.42 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.80 8.10 -51.93 -0.42 0.37 16 37 H 0.07 0.83 8.02 -51.93 -0.42 0.41 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.46 8.03 -51.93 -0.42 0.04 16 40 H 0.07 0.58 8.00 -51.93 -0.42 0.16 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.56 7.84 -51.93 -0.41 0.16 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.38 5.12 9.08 45.56 0.41 5.53 16 48 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.09 2.35 6.06 -51.93 -0.31 2.03 16 LS Contribution 381.99 15.07 5.76 5.76 Total: -1.00 -31.37 381.99 -9.85 -41.22 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -8.14 Total: 7.96 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -1.90 Total: 0.42 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.16 Total: -50.84 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.38 Total: -20.56 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.37 -9.85 -41.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099644959.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.181 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds