Wall clock time and date at job start Fri Apr 10 2020 22:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00339 * 2 1 4 4 H 1.48494 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46755 * 299.99892 * 3 2 1 6 6 H 1.48499 * 109.47057 * 59.99752 * 3 2 1 7 7 C 1.38815 * 119.99381 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99560 * 163.07676 * 7 2 1 9 9 N 1.36932 * 120.00211 * 343.07350 * 7 2 1 10 10 C 1.46936 * 120.62765 * 151.81455 * 9 7 2 11 11 C 1.53188 * 108.77533 * 126.41406 * 10 9 7 12 12 C 1.53049 * 109.31282 * 54.63182 * 11 10 9 13 13 H 1.09003 * 109.44551 * 58.64849 * 12 11 10 14 14 N 1.46498 * 109.45943 * 178.61314 * 12 11 10 15 15 C 1.34774 * 120.00116 * 275.06940 * 14 12 11 16 16 O 1.21285 * 119.99938 * 359.97438 * 15 14 12 17 17 C 1.50701 * 120.00257 * 180.02562 * 15 14 12 18 18 C 1.52998 * 109.47452 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47131 * 180.02562 * 18 17 15 20 20 C 1.54883 * 110.59947 * 68.31864 * 19 18 17 21 21 C 1.54887 * 102.74847 * 156.67776 * 20 19 18 22 22 C 1.54268 * 104.19673 * 322.05590 * 21 20 19 23 23 C 1.53873 * 106.59848 * 23.60836 * 22 21 20 24 24 C 1.53035 * 109.53950 * 298.63693 * 12 11 10 25 25 H 1.09000 * 109.49855 * 301.41501 * 24 12 11 26 26 O 1.42903 * 109.49721 * 181.31522 * 24 12 11 27 27 C 1.46923 * 120.63495 * 331.83598 * 9 7 2 28 28 H 0.97004 * 119.99630 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.58082 * 246.19884 * 10 9 7 30 30 H 1.08998 * 109.58316 * 6.48257 * 10 9 7 31 31 H 1.08995 * 109.49797 * 294.68359 * 11 10 9 32 32 H 1.08995 * 109.49904 * 174.58151 * 11 10 9 33 33 H 0.96994 * 120.00130 * 95.07477 * 14 12 11 34 34 H 1.08997 * 109.46831 * 59.99833 * 17 15 14 35 35 H 1.09000 * 109.46553 * 300.00302 * 17 15 14 36 36 H 1.09005 * 109.47076 * 59.99839 * 18 17 15 37 37 H 1.08998 * 109.46715 * 300.00047 * 18 17 15 38 38 H 1.08995 * 110.43325 * 305.69512 * 19 18 17 39 39 H 1.08998 * 110.75510 * 274.98832 * 20 19 18 40 40 H 1.09000 * 110.76145 * 38.36118 * 20 19 18 41 41 H 1.09002 * 110.48799 * 203.37591 * 21 20 19 42 42 H 1.08999 * 110.49158 * 80.73295 * 21 20 19 43 43 H 1.09004 * 110.03003 * 264.32879 * 22 21 20 44 44 H 1.08999 * 110.07611 * 142.92026 * 22 21 20 45 45 H 1.09000 * 110.03500 * 240.72001 * 23 22 21 46 46 H 1.08998 * 110.07556 * 119.30612 * 23 22 21 47 47 H 0.96703 * 113.99859 * 180.02562 * 26 24 12 48 48 H 1.09003 * 109.58788 * 113.79564 * 27 9 7 49 49 H 1.09001 * 109.58394 * 353.37851 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2226 -0.2717 9 7 1.3699 -2.3622 0.3463 10 6 1.8135 -3.6530 -0.1979 11 6 2.0672 -4.6174 0.9649 12 6 0.8118 -4.7007 1.8364 13 1 -0.0284 -5.0407 1.2309 14 7 1.0395 -5.6475 2.9309 15 6 0.8359 -6.9654 2.7352 16 8 0.4638 -7.3674 1.6531 17 6 1.0695 -7.9393 3.8612 18 6 0.7685 -9.3594 3.3780 19 6 1.0051 -10.3481 4.5214 20 6 -0.0525 -10.1550 5.6363 21 6 -0.0574 -11.5323 6.3450 22 6 0.1088 -12.5491 5.1968 23 6 0.7844 -11.7962 4.0373 24 6 0.4975 -3.3191 2.4146 25 1 1.3473 -2.9676 2.9996 26 8 -0.6569 -3.4041 3.2526 27 6 0.2261 -2.3399 1.2681 28 1 -0.4850 0.8401 -0.0004 29 1 1.0397 -4.0605 -0.8485 30 1 2.7328 -3.5131 -0.7667 31 1 2.9022 -4.2537 1.5636 32 1 2.3038 -5.6063 0.5724 33 1 1.3366 -5.3260 3.7964 34 1 0.4142 -7.6928 4.6966 35 1 2.1087 -7.8785 4.1844 36 1 1.4241 -9.6056 2.5427 37 1 -0.2706 -9.4205 3.0545 38 1 2.0107 -10.2299 4.9247 39 1 0.2521 -9.3672 6.3253 40 1 -1.0308 -9.9377 5.2075 41 1 -1.0037 -11.6919 6.8619 42 1 0.7766 -11.6053 7.0429 43 1 -0.8667 -12.9205 4.8828 44 1 0.7376 -13.3788 5.5200 45 1 0.1367 -11.8022 3.1606 46 1 1.7413 -12.2596 3.7974 47 1 -0.9146 -2.5627 3.6536 48 1 -0.6771 -2.6403 0.7371 49 1 0.0994 -1.3341 1.6688 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099644959.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:55 Heat of formation + Delta-G solvation = -119.541006 kcal Electronic energy + Delta-G solvation = -26260.304673 eV Core-core repulsion = 22606.378538 eV Total energy + Delta-G solvation = -3653.926135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.11456 -39.64331 -38.95877 -36.90055 -35.79584 -34.22422 -33.80464 -31.33716 -30.55191 -29.58610 -28.92083 -26.95019 -24.68552 -23.88325 -23.22011 -21.49112 -21.26953 -20.78930 -20.62303 -18.94797 -18.12185 -17.83363 -17.40882 -16.81572 -16.55233 -16.39363 -15.80011 -15.61766 -15.42536 -15.14860 -14.82754 -14.73795 -14.31368 -14.17898 -13.88423 -13.75007 -13.43588 -13.36437 -13.07879 -13.00771 -12.69703 -12.53080 -12.20113 -12.09476 -12.03935 -11.99888 -11.89357 -11.82095 -11.68124 -11.44158 -11.39580 -11.33133 -11.17896 -11.00759 -10.71368 -10.62561 -9.99981 -8.77735 -7.92102 -5.40049 1.46877 1.49432 1.60116 1.73260 2.24472 2.48581 3.10870 3.25832 3.62256 3.68392 3.72767 3.84554 3.89425 4.00340 4.05530 4.21882 4.29251 4.30833 4.41064 4.44616 4.59807 4.64299 4.67883 4.71606 4.75337 4.80703 4.84680 4.89427 4.92455 4.97625 5.02864 5.03724 5.14305 5.15171 5.22105 5.28877 5.31417 5.33577 5.41807 5.53117 5.54896 5.55395 5.62682 5.63053 6.32053 6.65413 6.81607 7.08544 7.35874 7.75647 8.29212 9.14804 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.038182 B = 0.002378 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.161119 B =11770.962124 C =12092.282552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.296 1.296 6 H -0.286 1.286 7 C -0.264 4.264 8 H 0.073 0.927 9 N -0.605 5.605 10 C 0.141 3.859 11 C -0.121 4.121 12 C 0.169 3.831 13 H 0.050 0.950 14 N -0.707 5.707 15 C 0.504 3.496 16 O -0.593 6.593 17 C -0.128 4.128 18 C -0.091 4.091 19 C -0.087 4.087 20 C -0.124 4.124 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.125 4.125 24 C 0.093 3.907 25 H 0.068 0.932 26 O -0.573 6.573 27 C 0.156 3.844 28 H 0.252 0.748 29 H 0.006 0.994 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.413 0.587 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.053 0.947 46 H 0.067 0.933 47 H 0.392 0.608 48 H -0.008 1.008 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.706 -19.172 15.924 25.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.223 1.223 6 H -0.213 1.213 7 C -0.394 4.394 8 H 0.091 0.909 9 N -0.329 5.329 10 C 0.015 3.985 11 C -0.161 4.161 12 C 0.063 3.937 13 H 0.068 0.932 14 N -0.358 5.358 15 C 0.292 3.708 16 O -0.474 6.474 17 C -0.167 4.167 18 C -0.129 4.129 19 C -0.105 4.105 20 C -0.161 4.161 21 C -0.162 4.162 22 C -0.164 4.164 23 C -0.163 4.163 24 C 0.032 3.968 25 H 0.086 0.914 26 O -0.380 6.380 27 C 0.029 3.971 28 H 0.061 0.939 29 H 0.024 0.976 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.249 0.751 34 H 0.130 0.870 35 H 0.137 0.863 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.241 0.759 48 H 0.010 0.990 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.377 -19.959 14.986 25.186 hybrid contribution -0.115 1.873 -0.259 1.894 sum 3.262 -18.086 14.727 23.550 Atomic orbital electron populations 1.70203 1.06774 1.26052 1.55132 1.25883 0.96064 1.01727 1.00857 0.85151 0.78678 0.79461 0.76790 1.18867 1.22287 1.21262 1.19584 0.93050 0.85479 1.41308 0.90927 1.44269 1.35718 1.02533 1.50416 1.21049 0.97788 0.85777 0.93927 1.22180 0.97087 0.99384 0.97477 1.20600 0.97262 0.87374 0.88470 0.93196 1.45947 1.68430 1.06138 1.15257 1.21564 0.75637 0.83357 0.90215 1.90679 1.48448 1.79064 1.29186 1.21722 1.05858 0.93063 0.96079 1.21305 1.01281 0.92540 0.97793 1.22004 1.00143 0.93670 0.94680 1.22626 0.98559 0.97768 0.97161 1.22364 1.02026 0.94392 0.97409 1.22148 1.00489 0.98357 0.95385 1.22224 1.00710 0.95175 0.98199 1.22540 0.87952 0.94531 0.91773 0.91449 1.86394 1.47869 1.38126 1.65618 1.21226 0.88278 0.98078 0.89475 0.93906 0.97632 0.91456 0.90562 0.91271 0.75063 0.86957 0.86256 0.92767 0.93320 0.89403 0.90341 0.92385 0.91539 0.90884 0.92307 0.91276 0.92856 0.91468 0.75894 0.98962 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.24 11.20 21.65 0.24 -54.00 16 2 C -0.05 -2.71 4.92 84.86 0.42 -2.29 16 3 Si 0.97 43.38 29.59 68.60 2.03 45.41 16 4 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.26 -14.14 9.58 84.03 0.81 -13.34 16 8 H 0.07 3.76 7.89 -2.91 -0.02 3.73 16 9 N -0.60 -30.09 2.99 -699.08 -2.09 -32.18 16 10 C 0.14 6.04 6.52 86.36 0.56 6.61 16 11 C -0.12 -4.30 5.65 30.67 0.17 -4.13 16 12 C 0.17 6.05 2.12 45.02 0.10 6.14 16 13 H 0.05 2.18 7.58 -2.39 -0.02 2.16 16 14 N -0.71 -19.61 4.92 -442.40 -2.18 -21.79 16 15 C 0.50 14.38 7.79 87.66 0.68 15.06 16 16 O -0.59 -22.76 15.65 -3.05 -0.05 -22.81 16 17 C -0.13 -2.27 5.56 29.85 0.17 -2.11 16 18 C -0.09 -1.78 3.86 30.59 0.12 -1.66 16 19 C -0.09 -1.23 2.87 -9.72 -0.03 -1.25 16 20 C -0.12 -1.60 5.60 31.88 0.18 -1.42 16 21 C -0.12 -1.43 6.83 31.67 0.22 -1.21 16 22 C -0.13 -1.58 6.80 31.32 0.21 -1.37 16 23 C -0.13 -1.83 6.37 31.32 0.20 -1.63 16 24 C 0.09 3.40 3.14 30.67 0.10 3.50 16 25 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 26 O -0.57 -18.86 13.16 -148.98 -1.96 -20.82 16 27 C 0.16 7.43 4.93 86.36 0.43 7.85 16 28 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 29 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16 30 H 0.07 2.75 7.93 -2.39 -0.02 2.73 16 31 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.41 8.77 8.60 -92.71 -0.80 7.98 16 34 H 0.11 1.59 7.48 -2.39 -0.02 1.57 16 35 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.05 1.22 8.10 -2.38 -0.02 1.20 16 37 H 0.05 1.15 8.02 -2.39 -0.02 1.13 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 0.83 8.03 -2.39 -0.02 0.81 16 40 H 0.06 0.88 8.00 -2.39 -0.02 0.87 16 41 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 44 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.05 0.90 7.84 -2.39 -0.02 0.88 16 46 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.39 10.14 9.08 -74.05 -0.67 9.47 16 48 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 49 H 0.07 3.67 6.06 -2.39 -0.01 3.66 16 Total: -1.00 -69.60 381.99 -0.22 -69.82 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: -0.54 Total: 27.61 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 4.32 Total: 8.76 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -4.03 Total: -107.97 kcal Atomic # 8 Polarization: -41.62 SS G_CDS: -2.01 Total: -43.63 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -69.60 -0.22 -69.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099644959.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.717 kcal (2) G-P(sol) polarization free energy of solvation -69.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds