Wall clock time and date at job start Fri Apr 10 2020 22:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99763 * 2 1 4 4 H 1.48503 * 109.46726 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47021 * 299.99864 * 3 2 1 6 6 H 1.48502 * 109.47101 * 59.99957 * 3 2 1 7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 12 12 C 1.54049 * 86.98426 * 140.01639 * 11 10 9 13 13 C 1.53002 * 113.62024 * 220.02020 * 12 11 10 14 14 N 1.46500 * 109.47425 * 272.50011 * 13 12 11 15 15 C 1.34772 * 120.00059 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00308 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00066 * 180.02562 * 15 14 13 18 18 O 1.42899 * 109.47490 * 179.97438 * 17 15 14 19 19 C 1.42906 * 114.00097 * 179.97438 * 18 17 15 20 20 C 1.52994 * 109.46970 * 180.02562 * 19 18 17 21 21 C 1.54265 * 110.03610 * 292.91218 * 20 19 18 22 22 C 1.54963 * 104.15960 * 217.13815 * 21 20 19 23 23 C 1.54885 * 102.77861 * 37.88394 * 22 21 20 24 24 C 1.53870 * 110.03544 * 175.69017 * 20 19 18 25 25 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 26 26 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 28 28 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 29 29 H 1.08992 * 113.61675 * 254.61383 * 11 10 9 30 30 H 1.09000 * 113.60973 * 25.51671 * 11 10 9 31 31 H 1.08996 * 113.68970 * 89.12734 * 12 11 10 32 32 H 1.08997 * 109.47064 * 32.50151 * 13 12 11 33 33 H 1.09006 * 109.47182 * 152.49563 * 13 12 11 34 34 H 0.96996 * 119.99355 * 359.97438 * 14 13 12 35 35 H 1.09005 * 109.47018 * 300.00068 * 17 15 14 36 36 H 1.09006 * 109.47329 * 59.99263 * 17 15 14 37 37 H 1.08994 * 109.46835 * 300.00399 * 19 18 17 38 38 H 1.09000 * 109.46608 * 60.00105 * 19 18 17 39 39 H 1.09004 * 110.01997 * 54.30099 * 20 19 18 40 40 H 1.09003 * 110.48478 * 335.78104 * 21 20 19 41 41 H 1.09002 * 110.49016 * 98.42004 * 21 20 19 42 42 H 1.09001 * 110.72111 * 279.56522 * 22 21 20 43 43 H 1.09008 * 110.92327 * 156.29154 * 22 21 20 44 44 H 1.09004 * 110.48726 * 203.40498 * 23 22 21 45 45 H 1.09001 * 110.59789 * 80.82152 * 23 22 21 46 46 H 1.09001 * 110.03603 * 238.57247 * 24 20 19 47 47 H 1.09009 * 110.02614 * 0.02562 * 24 20 19 48 48 H 1.08999 * 113.61567 * 334.48111 * 25 10 9 49 49 H 1.08998 * 113.61196 * 105.38466 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 2.0328 -4.3828 1.3560 12 6 1.8625 -5.6908 0.5602 13 6 0.8750 -6.6712 1.1963 14 7 1.5802 -7.5166 2.1628 15 6 0.9070 -8.4609 2.8494 16 8 -0.2827 -8.6106 2.6675 17 6 1.6323 -9.3301 3.8441 18 8 0.7100 -10.2459 4.4381 19 6 1.2994 -11.1216 5.4014 20 6 0.2259 -12.0529 5.9681 21 6 -0.7913 -11.2433 6.7986 22 6 -1.1437 -12.1785 7.9828 23 6 0.2152 -12.8472 8.3074 24 6 0.8652 -13.0726 6.9268 25 6 1.2469 -4.8365 -0.5606 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 0.0005 28 1 3.0560 -3.5693 -0.4293 29 1 2.9742 -4.3216 1.9018 30 1 1.1688 -4.1300 1.9705 31 1 2.8060 -6.1607 0.2828 32 1 0.0882 -6.1151 1.7060 33 1 0.4334 -7.2968 0.4205 34 1 2.5317 -7.3971 2.3080 35 1 2.4196 -9.8859 3.3348 36 1 2.0731 -8.7043 4.6201 37 1 2.0793 -11.7148 4.9240 38 1 1.7339 -10.5331 6.2095 39 1 -0.2839 -12.5722 5.1565 40 1 -0.3384 -10.3210 7.1628 41 1 -1.6799 -11.0250 6.2062 42 1 -1.8786 -12.9243 7.6798 43 1 -1.5062 -11.6059 8.8366 44 1 0.0603 -13.7987 8.8161 45 1 0.8321 -12.1862 8.9163 46 1 0.6651 -14.0867 6.5809 47 1 1.9404 -12.9037 6.9886 48 1 0.1684 -4.7076 -0.4690 49 1 1.5543 -5.1413 -1.5609 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100415911.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:59 Heat of formation + Delta-G solvation = -73.459687 kcal Electronic energy + Delta-G solvation = -24685.174539 eV Core-core repulsion = 21033.246641 eV Total energy + Delta-G solvation = -3651.927899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.96340 -39.06868 -38.41933 -37.07545 -34.67085 -33.29651 -31.06947 -30.32873 -29.09487 -28.69122 -26.43684 -25.10058 -24.57239 -23.77307 -21.10060 -21.03270 -20.80207 -20.00268 -19.05690 -17.47403 -17.14372 -16.98085 -16.63850 -16.06226 -15.52609 -15.49303 -15.07981 -14.79284 -14.57269 -14.18484 -13.71961 -13.70276 -13.50832 -13.18161 -12.99243 -12.61972 -12.16223 -11.91310 -11.81716 -11.65266 -11.50242 -11.38564 -11.35887 -11.24591 -11.11651 -10.95642 -10.85957 -10.79615 -10.53338 -10.25496 -10.11779 -9.99176 -9.83055 -9.80026 -9.48877 -9.04797 -8.87971 -6.96939 -5.79078 -3.08050 2.54647 2.66120 3.41725 3.47114 3.49662 3.69829 4.22805 4.24231 4.42329 4.57395 4.59039 4.78960 4.79584 4.91092 4.95090 4.96878 5.01109 5.05192 5.08588 5.22006 5.23725 5.29379 5.34159 5.42096 5.45918 5.49143 5.52349 5.63378 5.74202 5.81373 5.83922 5.91385 5.92351 5.96723 6.06673 6.08419 6.23994 6.29942 6.35174 6.43127 6.57941 6.75288 6.81652 7.10618 7.43406 7.68680 8.16592 8.39445 9.50536 10.08989 10.43061 11.43335 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.027206 B = 0.001736 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.953460 B =16123.891596 C =16533.933355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.165 3.835 11 C -0.161 4.161 12 C -0.127 4.127 13 C 0.134 3.866 14 N -0.724 5.724 15 C 0.509 3.491 16 O -0.521 6.521 17 C 0.045 3.955 18 O -0.360 6.360 19 C 0.067 3.933 20 C -0.091 4.091 21 C -0.115 4.115 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.118 4.118 25 C -0.142 4.142 26 H 0.255 0.745 27 H 0.385 0.615 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.400 0.600 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.081 0.919 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.487 -27.402 13.048 30.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.053 3.947 11 C -0.202 4.202 12 C -0.146 4.146 13 C 0.011 3.989 14 N -0.378 5.378 15 C 0.294 3.706 16 O -0.396 6.396 17 C -0.036 4.036 18 O -0.279 6.279 19 C -0.010 4.010 20 C -0.110 4.110 21 C -0.152 4.152 22 C -0.166 4.166 23 C -0.163 4.163 24 C -0.156 4.156 25 C -0.181 4.181 26 H 0.065 0.935 27 H 0.219 0.781 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.234 0.766 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.099 0.901 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.521 -27.331 12.843 30.535 hybrid contribution 0.982 1.003 0.165 1.413 sum 5.503 -26.329 13.008 29.878 Atomic orbital electron populations 1.69672 1.05138 1.25643 1.57502 1.24777 0.95524 0.97802 1.02852 0.86119 0.78765 0.84104 0.77197 1.20544 1.21838 1.21867 1.19348 0.91100 0.84246 1.42838 0.91041 1.42422 1.05779 0.99889 1.87042 1.21525 0.95237 0.85080 0.92854 1.23998 1.01290 0.94779 1.00115 1.22690 0.98430 0.94442 0.99066 1.21451 0.95027 0.91728 0.90727 1.45936 1.12853 1.36240 1.42753 1.20218 0.87858 0.80860 0.81658 1.90742 1.14990 1.68681 1.65206 1.22194 0.92461 0.92743 0.96166 1.88028 1.33918 1.48846 1.57064 1.22751 0.95634 0.91648 0.90942 1.21761 0.95861 0.95370 0.98014 1.22381 0.99003 0.97879 0.95948 1.22549 0.97018 0.98721 0.98279 1.22362 0.96689 1.00573 0.96652 1.22137 0.99891 0.98726 0.94799 1.23426 1.00954 0.97023 0.96732 0.93488 0.78056 0.90752 0.92775 0.90317 0.89354 0.91125 0.91689 0.76618 0.90456 0.90336 0.93264 0.93047 0.90031 0.91488 0.91115 0.91529 0.91566 0.91707 0.91632 0.91372 0.91648 0.90057 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -17.74 5.41 -52.64 -0.28 -18.02 16 10 C 0.17 3.15 4.47 -67.12 -0.30 2.85 16 11 C -0.16 -2.60 7.45 -25.77 -0.19 -2.79 16 12 C -0.13 -1.65 3.76 -89.67 -0.34 -1.99 16 13 C 0.13 1.74 5.51 -4.04 -0.02 1.72 16 14 N -0.72 -7.92 5.56 -60.29 -0.33 -8.26 16 15 C 0.51 6.55 7.91 -10.99 -0.09 6.46 16 16 O -0.52 -9.31 16.50 -14.36 -0.24 -9.55 16 17 C 0.04 0.41 6.42 36.00 0.23 0.64 16 18 O -0.36 -4.10 9.71 -55.14 -0.54 -4.64 16 19 C 0.07 0.52 4.98 37.15 0.19 0.71 16 20 C -0.09 -0.70 3.19 -89.51 -0.29 -0.99 16 21 C -0.11 -0.95 6.22 -25.03 -0.16 -1.10 16 22 C -0.13 -0.84 6.91 -24.70 -0.17 -1.01 16 23 C -0.13 -0.71 6.83 -25.08 -0.17 -0.88 16 24 C -0.12 -0.68 6.46 -25.62 -0.17 -0.84 16 25 C -0.14 -2.22 7.39 -25.92 -0.19 -2.42 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.39 10.24 7.91 -40.82 -0.32 9.92 16 28 H 0.07 1.40 8.11 -51.93 -0.42 0.98 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.43 7.90 -51.93 -0.41 1.02 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.07 7.85 -51.93 -0.41 0.66 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.40 3.13 8.47 -40.82 -0.35 2.79 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.05 0.35 8.02 -51.93 -0.42 -0.07 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.58 7.77 -51.93 -0.40 0.17 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.32 7.67 -51.92 -0.40 -0.08 16 48 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 49 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 395.96 15.07 5.97 5.97 Total: -1.00 -33.73 395.96 -10.64 -44.37 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -9.01 Total: 7.34 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -1.91 Total: -7.00 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.10 Total: -53.73 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.77 Total: -14.19 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.73 -10.64 -44.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100415911.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.091 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds