Wall clock time and date at job start Fri Apr 10 2020 22:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99763 * 2 1 4 4 H 1.48503 * 109.46726 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47021 * 299.99864 * 3 2 1 6 6 H 1.48502 * 109.47101 * 59.99957 * 3 2 1 7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 12 12 C 1.54049 * 86.98426 * 140.01639 * 11 10 9 13 13 C 1.53002 * 113.62024 * 220.02020 * 12 11 10 14 14 N 1.46500 * 109.47425 * 272.50011 * 13 12 11 15 15 C 1.34772 * 120.00059 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00308 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00066 * 180.02562 * 15 14 13 18 18 O 1.42899 * 109.47490 * 179.97438 * 17 15 14 19 19 C 1.42906 * 114.00097 * 179.97438 * 18 17 15 20 20 C 1.52994 * 109.46970 * 180.02562 * 19 18 17 21 21 C 1.54265 * 110.03610 * 292.91218 * 20 19 18 22 22 C 1.54963 * 104.15960 * 217.13815 * 21 20 19 23 23 C 1.54885 * 102.77861 * 37.88394 * 22 21 20 24 24 C 1.53870 * 110.03544 * 175.69017 * 20 19 18 25 25 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 26 26 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 28 28 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 29 29 H 1.08992 * 113.61675 * 254.61383 * 11 10 9 30 30 H 1.09000 * 113.60973 * 25.51671 * 11 10 9 31 31 H 1.08996 * 113.68970 * 89.12734 * 12 11 10 32 32 H 1.08997 * 109.47064 * 32.50151 * 13 12 11 33 33 H 1.09006 * 109.47182 * 152.49563 * 13 12 11 34 34 H 0.96996 * 119.99355 * 359.97438 * 14 13 12 35 35 H 1.09005 * 109.47018 * 300.00068 * 17 15 14 36 36 H 1.09006 * 109.47329 * 59.99263 * 17 15 14 37 37 H 1.08994 * 109.46835 * 300.00399 * 19 18 17 38 38 H 1.09000 * 109.46608 * 60.00105 * 19 18 17 39 39 H 1.09004 * 110.01997 * 54.30099 * 20 19 18 40 40 H 1.09003 * 110.48478 * 335.78104 * 21 20 19 41 41 H 1.09002 * 110.49016 * 98.42004 * 21 20 19 42 42 H 1.09001 * 110.72111 * 279.56522 * 22 21 20 43 43 H 1.09008 * 110.92327 * 156.29154 * 22 21 20 44 44 H 1.09004 * 110.48726 * 203.40498 * 23 22 21 45 45 H 1.09001 * 110.59789 * 80.82152 * 23 22 21 46 46 H 1.09001 * 110.03603 * 238.57247 * 24 20 19 47 47 H 1.09009 * 110.02614 * 0.02562 * 24 20 19 48 48 H 1.08999 * 113.61567 * 334.48111 * 25 10 9 49 49 H 1.08998 * 113.61196 * 105.38466 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 2.0328 -4.3828 1.3560 12 6 1.8625 -5.6908 0.5602 13 6 0.8750 -6.6712 1.1963 14 7 1.5802 -7.5166 2.1628 15 6 0.9070 -8.4609 2.8494 16 8 -0.2827 -8.6106 2.6675 17 6 1.6323 -9.3301 3.8441 18 8 0.7100 -10.2459 4.4381 19 6 1.2994 -11.1216 5.4014 20 6 0.2259 -12.0529 5.9681 21 6 -0.7913 -11.2433 6.7986 22 6 -1.1437 -12.1785 7.9828 23 6 0.2152 -12.8472 8.3074 24 6 0.8652 -13.0726 6.9268 25 6 1.2469 -4.8365 -0.5606 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 0.0005 28 1 3.0560 -3.5693 -0.4293 29 1 2.9742 -4.3216 1.9018 30 1 1.1688 -4.1300 1.9705 31 1 2.8060 -6.1607 0.2828 32 1 0.0882 -6.1151 1.7060 33 1 0.4334 -7.2968 0.4205 34 1 2.5317 -7.3971 2.3080 35 1 2.4196 -9.8859 3.3348 36 1 2.0731 -8.7043 4.6201 37 1 2.0793 -11.7148 4.9240 38 1 1.7339 -10.5331 6.2095 39 1 -0.2839 -12.5722 5.1565 40 1 -0.3384 -10.3210 7.1628 41 1 -1.6799 -11.0250 6.2062 42 1 -1.8786 -12.9243 7.6798 43 1 -1.5062 -11.6059 8.8366 44 1 0.0603 -13.7987 8.8161 45 1 0.8321 -12.1862 8.9163 46 1 0.6651 -14.0867 6.5809 47 1 1.9404 -12.9037 6.9886 48 1 0.1684 -4.7076 -0.4690 49 1 1.5543 -5.1413 -1.5609 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100415911.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:59 Heat of formation + Delta-G solvation = -95.155932 kcal Electronic energy + Delta-G solvation = -24686.115359 eV Core-core repulsion = 21033.246641 eV Total energy + Delta-G solvation = -3652.868718 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.96970 -39.95313 -39.47589 -37.78758 -36.03970 -35.01330 -32.28143 -31.56868 -29.85803 -29.49979 -27.53748 -26.45306 -25.71963 -25.08910 -22.47478 -21.80851 -21.55006 -20.65679 -20.38151 -19.05707 -18.25382 -17.95736 -17.37671 -16.90705 -16.70437 -16.41511 -16.09065 -15.96441 -15.71282 -15.44652 -15.04398 -14.88540 -14.45638 -14.21358 -14.08567 -13.49078 -13.33153 -13.23186 -13.03888 -12.91859 -12.78685 -12.64694 -12.16132 -12.15776 -12.05317 -11.97724 -11.91265 -11.70228 -11.59488 -11.54654 -11.49069 -11.32306 -11.09891 -10.86382 -10.75650 -10.62931 -10.09482 -8.97321 -7.94438 -5.22874 1.47536 1.48321 1.57688 1.58399 1.83985 2.56866 2.98240 3.37797 3.65923 3.69953 3.72733 3.75623 3.79797 3.91034 3.95976 4.21721 4.25708 4.27765 4.35776 4.37421 4.42013 4.43310 4.51503 4.56678 4.56923 4.68727 4.75366 4.77587 4.84574 4.91477 4.98163 4.99731 5.06035 5.06761 5.08940 5.23227 5.24777 5.34546 5.35837 5.42982 5.47062 5.47720 5.53583 5.74638 6.12286 6.28007 6.58769 7.25106 7.33279 8.12053 8.33378 9.29359 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.027206 B = 0.001736 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.953460 B =16123.891596 C =16533.933355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.241 4.241 8 H 0.081 0.919 9 N -0.731 5.731 10 C 0.142 3.858 11 C -0.153 4.153 12 C -0.093 4.093 13 C 0.139 3.861 14 N -0.709 5.709 15 C 0.503 3.497 16 O -0.582 6.582 17 C 0.048 3.952 18 O -0.398 6.398 19 C 0.065 3.935 20 C -0.095 4.095 21 C -0.118 4.118 22 C -0.128 4.128 23 C -0.123 4.123 24 C -0.113 4.113 25 C -0.138 4.138 26 H 0.250 0.750 27 H 0.371 0.629 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.126 0.874 32 H 0.043 0.957 33 H 0.063 0.937 34 H 0.420 0.580 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.046 0.954 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.064 0.936 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.809 -29.157 13.778 33.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.222 1.222 6 H -0.224 1.224 7 C -0.373 4.373 8 H 0.099 0.901 9 N -0.369 5.369 10 C 0.033 3.967 11 C -0.194 4.194 12 C -0.112 4.112 13 C 0.015 3.985 14 N -0.363 5.363 15 C 0.290 3.710 16 O -0.461 6.461 17 C -0.031 4.031 18 O -0.317 6.317 19 C -0.011 4.011 20 C -0.113 4.113 21 C -0.156 4.156 22 C -0.165 4.165 23 C -0.160 4.160 24 C -0.150 4.150 25 C -0.177 4.177 26 H 0.058 0.942 27 H 0.203 0.797 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.257 0.743 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.083 0.917 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.943 -29.134 13.583 33.112 hybrid contribution -0.042 1.479 -0.072 1.481 sum 7.900 -27.655 13.511 31.777 Atomic orbital electron populations 1.69838 1.06774 1.25909 1.59888 1.25613 0.96362 1.01305 1.04020 0.85062 0.78399 0.79779 0.76464 1.18633 1.22232 1.22369 1.19792 0.91675 0.85350 1.40460 0.90121 1.42659 1.05348 1.01314 1.87549 1.21984 0.95638 0.83816 0.95310 1.23766 1.01089 0.95977 0.98532 1.22518 0.99446 0.92886 0.96316 1.21214 0.94659 0.91738 0.90929 1.45755 1.13671 1.35157 1.41692 1.21024 0.87320 0.80889 0.81727 1.90719 1.17745 1.70461 1.67191 1.22313 0.91987 0.92736 0.96085 1.87993 1.35849 1.49806 1.58086 1.22912 0.95813 0.91531 0.90862 1.21798 0.95912 0.95720 0.97892 1.22375 0.98386 0.98301 0.96556 1.22553 0.97925 0.98460 0.97600 1.22370 0.95812 1.01058 0.96801 1.22120 1.00523 0.98277 0.94105 1.23321 0.99719 0.96021 0.98675 0.94165 0.79747 0.89976 0.91051 0.92867 0.85575 0.93883 0.91833 0.74297 0.86894 0.87645 0.91255 0.91773 0.91566 0.92037 0.93493 0.91576 0.91320 0.90631 0.91149 0.90801 0.90215 0.91732 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.51 13.06 21.65 0.28 -60.23 16 2 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 3 Si 0.97 46.15 29.55 68.60 2.03 48.18 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 7 C -0.24 -13.29 9.97 84.03 0.84 -12.45 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 9 N -0.73 -36.79 5.41 -320.44 -1.73 -38.53 16 10 C 0.14 5.26 4.47 45.52 0.20 5.47 16 11 C -0.15 -4.72 7.45 31.21 0.23 -4.49 16 12 C -0.09 -2.16 3.76 -10.18 -0.04 -2.20 16 13 C 0.14 3.45 5.51 86.38 0.48 3.93 16 14 N -0.71 -13.87 5.56 -463.06 -2.57 -16.45 16 15 C 0.50 12.34 7.91 87.66 0.69 13.03 16 16 O -0.58 -21.23 16.50 16.00 0.26 -20.96 16 17 C 0.05 0.75 6.42 71.23 0.46 1.21 16 18 O -0.40 -8.63 9.71 -129.94 -1.26 -9.90 16 19 C 0.06 0.88 4.98 71.98 0.36 1.24 16 20 C -0.09 -1.38 3.19 -10.07 -0.03 -1.41 16 21 C -0.12 -2.00 6.22 31.69 0.20 -1.80 16 22 C -0.13 -1.62 6.91 31.91 0.22 -1.40 16 23 C -0.12 -1.16 6.83 31.67 0.22 -0.95 16 24 C -0.11 -1.06 6.46 31.32 0.20 -0.86 16 25 C -0.14 -4.16 7.39 31.12 0.23 -3.93 16 26 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 27 H 0.37 20.42 7.91 -92.71 -0.73 19.69 16 28 H 0.08 2.92 8.11 -2.39 -0.02 2.90 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 1.93 7.90 -2.39 -0.02 1.92 16 31 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.04 1.33 7.85 -2.39 -0.02 1.31 16 33 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.42 4.91 8.47 -92.71 -0.79 4.13 16 35 H 0.11 0.96 8.14 -2.38 -0.02 0.95 16 36 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.06 0.70 8.02 -2.39 -0.02 0.68 16 39 H 0.07 1.14 8.14 -2.38 -0.02 1.13 16 40 H 0.06 1.07 7.77 -2.39 -0.02 1.06 16 41 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 45 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.08 0.54 7.67 -2.38 -0.02 0.52 16 48 H 0.06 2.18 8.07 -2.39 -0.02 2.16 16 49 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -76.66 395.96 1.13 -75.53 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: -0.60 Total: 31.18 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 4.72 Total: -8.84 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -4.02 Total: -115.20 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -1.00 Total: -30.86 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -76.66 1.13 -75.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100415911.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.625 kcal (2) G-P(sol) polarization free energy of solvation -76.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds