Wall clock time and date at job start Fri Apr 10 2020 22:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00048 * 2 1 4 4 H 1.48491 * 109.47113 * 269.99813 * 3 2 1 5 5 H 1.48503 * 109.46988 * 30.00004 * 3 2 1 6 6 H 1.48501 * 109.46739 * 149.99998 * 3 2 1 7 7 C 1.38812 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00187 * 359.97438 * 7 2 1 9 9 N 1.36944 * 119.99770 * 180.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 12 12 C 1.54049 * 86.98426 * 140.01639 * 11 10 9 13 13 C 1.53002 * 113.62024 * 220.02020 * 12 11 10 14 14 N 1.46500 * 109.47425 * 272.50011 * 13 12 11 15 15 C 1.34772 * 120.00059 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00308 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00066 * 180.02562 * 15 14 13 18 18 O 1.42899 * 109.47490 * 179.97438 * 17 15 14 19 19 C 1.42906 * 114.00097 * 179.97438 * 18 17 15 20 20 C 1.53000 * 109.47059 * 270.00033 * 19 18 17 21 21 C 1.52996 * 109.46893 * 179.97438 * 20 19 18 22 22 C 1.52995 * 109.47126 * 60.00075 * 21 20 19 23 23 C 1.53000 * 109.47411 * 300.00255 * 22 21 20 24 24 C 1.52996 * 109.47184 * 59.99780 * 23 22 21 25 25 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 26 26 H 0.97005 * 119.99972 * 359.97438 * 1 2 3 27 27 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 28 28 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 29 29 H 1.08992 * 113.61675 * 254.61383 * 11 10 9 30 30 H 1.09000 * 113.60973 * 25.51671 * 11 10 9 31 31 H 1.08996 * 113.68970 * 89.12734 * 12 11 10 32 32 H 1.08997 * 109.47064 * 32.50151 * 13 12 11 33 33 H 1.09006 * 109.47182 * 152.49563 * 13 12 11 34 34 H 0.96996 * 119.99355 * 359.97438 * 14 13 12 35 35 H 1.09005 * 109.47018 * 300.00068 * 17 15 14 36 36 H 1.09006 * 109.47329 * 59.99263 * 17 15 14 37 37 H 1.08999 * 109.46972 * 30.00551 * 19 18 17 38 38 H 1.08996 * 109.47266 * 300.00450 * 20 19 18 39 39 H 1.09004 * 109.46630 * 60.00205 * 20 19 18 40 40 H 1.09005 * 109.46993 * 300.00016 * 21 20 19 41 41 H 1.09000 * 109.46964 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.47388 * 179.97438 * 22 21 20 43 43 H 1.09005 * 109.47232 * 60.00088 * 22 21 20 44 44 H 1.09002 * 109.46400 * 299.99758 * 23 22 21 45 45 H 1.09001 * 109.47351 * 179.97438 * 23 22 21 46 46 H 1.08996 * 109.46998 * 180.02562 * 24 23 22 47 47 H 1.08996 * 109.47534 * 60.00181 * 24 23 22 48 48 H 1.08999 * 113.61567 * 334.48111 * 25 10 9 49 49 H 1.08998 * 113.61196 * 105.38466 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4709 0.0000 11 6 4.7541 -2.8117 -1.3553 12 6 5.9717 -3.3183 -0.5591 13 6 7.3147 -2.9532 -1.1946 14 7 7.6946 -3.9864 -2.1613 15 6 8.8493 -3.8754 -2.8474 16 8 9.5737 -2.9199 -2.6649 17 6 9.2398 -4.9379 -3.8421 18 8 10.4942 -4.5969 -4.4356 19 6 10.9583 -5.5450 -5.3989 20 6 11.8129 -6.6047 -4.7008 21 6 12.3093 -7.6201 -5.7320 22 6 13.1500 -6.9028 -6.7901 23 6 12.2955 -5.8430 -7.4882 24 6 11.7991 -4.8276 -6.4570 25 6 5.5392 -2.3583 0.5617 26 1 -0.4850 0.8401 0.0004 27 1 3.8646 -0.3622 0.0004 28 1 3.5373 -3.2915 0.4295 29 1 4.2305 -3.5962 -1.9015 30 1 4.9674 -1.9368 -1.9695 31 1 5.9067 -4.3704 -0.2820 32 1 7.2267 -1.9937 -1.7041 33 1 8.0770 -2.8837 -0.4185 34 1 7.1154 -4.7507 -2.3069 35 1 9.3272 -5.8977 -3.3330 36 1 8.4777 -5.0065 -4.6185 37 1 10.1044 -6.0243 -5.8776 38 1 12.6668 -6.1254 -4.2221 39 1 11.2137 -7.1160 -3.9473 40 1 11.4550 -8.0994 -6.2103 41 1 12.9178 -8.3753 -5.2346 42 1 13.5040 -7.6262 -7.5246 43 1 14.0043 -6.4235 -6.3119 44 1 11.4413 -6.3224 -7.9665 45 1 12.8946 -5.3317 -8.2418 46 1 11.1900 -4.0729 -6.9542 47 1 12.6533 -4.3483 -5.9787 48 1 5.9668 -1.3598 0.4705 49 1 5.6490 -2.7772 1.5620 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100470103.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:03 Heat of formation + Delta-G solvation = -73.197562 kcal Electronic energy + Delta-G solvation = -25009.712614 eV Core-core repulsion = 21357.796082 eV Total energy + Delta-G solvation = -3651.916532 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.13109 -39.33756 -38.51599 -36.63058 -34.77119 -33.35022 -31.26470 -30.91167 -30.47519 -28.78038 -26.50566 -25.22334 -23.62442 -23.05821 -22.60735 -21.01365 -20.86994 -20.25672 -19.31928 -17.54179 -17.39793 -17.16534 -16.32328 -16.04006 -15.58739 -15.17091 -14.90704 -14.69459 -14.60021 -14.27909 -14.06998 -13.77471 -13.54116 -13.14476 -12.88610 -12.69716 -12.66932 -12.50967 -12.21300 -12.00071 -11.65400 -11.59902 -11.55420 -11.48296 -11.07016 -10.96658 -10.91041 -10.76036 -10.50804 -10.36554 -10.15535 -9.90357 -9.84232 -9.76641 -9.55616 -9.12133 -8.90613 -7.28528 -5.79934 -3.15492 2.48940 2.60338 3.36914 3.40256 3.44879 3.63892 4.24274 4.26506 4.50171 4.52003 4.57087 4.70255 4.72644 4.80705 4.83600 4.85946 4.86535 4.90263 5.02471 5.03910 5.09054 5.14170 5.34602 5.37387 5.39265 5.52190 5.55598 5.63421 5.65856 5.70856 5.71695 5.74485 5.77474 5.83751 5.85802 5.94477 6.15252 6.15520 6.21151 6.34303 6.47771 6.65845 6.77712 6.96079 7.37252 7.96445 8.10577 8.39876 9.17812 9.90644 10.10362 11.38218 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.031090 B = 0.001863 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.380555 B =15022.165002 C =15235.216600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.249 4.249 8 H 0.091 0.909 9 N -0.738 5.738 10 C 0.171 3.829 11 C -0.161 4.161 12 C -0.127 4.127 13 C 0.133 3.867 14 N -0.725 5.725 15 C 0.510 3.490 16 O -0.522 6.522 17 C 0.044 3.956 18 O -0.356 6.356 19 C 0.089 3.911 20 C -0.143 4.143 21 C -0.117 4.117 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.117 4.117 25 C -0.145 4.145 26 H 0.260 0.740 27 H 0.363 0.637 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.401 0.599 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.225 -17.795 -12.156 33.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.109 0.891 9 N -0.377 5.377 10 C 0.060 3.940 11 C -0.201 4.201 12 C -0.146 4.146 13 C 0.010 3.990 14 N -0.378 5.378 15 C 0.295 3.705 16 O -0.397 6.397 17 C -0.036 4.036 18 O -0.275 6.275 19 C 0.031 3.969 20 C -0.180 4.180 21 C -0.155 4.155 22 C -0.161 4.161 23 C -0.154 4.154 24 C -0.154 4.154 25 C -0.184 4.184 26 H 0.070 0.930 27 H 0.196 0.804 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.235 0.765 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.097 0.903 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 25.578 -16.945 -11.953 32.928 hybrid contribution 0.063 0.567 -0.131 0.585 sum 25.641 -16.378 -12.084 32.737 Atomic orbital electron populations 1.69702 1.05130 1.25888 1.57296 1.24695 0.95260 0.97282 1.01856 0.86555 0.79245 0.84929 0.77849 1.21035 1.21682 1.20262 1.19133 0.80705 0.94754 1.43274 0.89147 1.42764 1.04083 1.02029 1.88848 1.21509 0.89492 0.90008 0.93002 1.23964 0.95706 1.00558 0.99916 1.22691 0.93172 0.99885 0.98842 1.21438 0.95930 0.90808 0.90779 1.45928 1.22222 1.26923 1.42747 1.20238 0.81412 0.87249 0.81633 1.90740 1.51321 1.32399 1.65222 1.22242 0.88068 0.97035 0.96250 1.88059 1.35261 1.47024 1.57117 1.22199 0.96185 0.89491 0.89040 1.22060 1.00749 0.96822 0.98416 1.21497 0.99813 0.97592 0.96565 1.21586 0.98490 0.97985 0.98026 1.21512 0.99779 0.96593 0.97527 1.21583 1.00152 0.98189 0.95512 1.23448 0.98903 0.98922 0.97168 0.93027 0.80436 0.89895 0.92262 0.90407 0.89047 0.91236 0.91640 0.76531 0.90455 0.90270 0.92037 0.90873 0.91838 0.91904 0.91611 0.91821 0.91720 0.91820 0.91304 0.91110 0.90871 0.90294 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.16 13.97 55.49 0.78 -28.39 16 2 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 22.14 27.74 -169.99 -4.71 17.42 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 7 C -0.25 -6.94 10.45 -15.06 -0.16 -7.10 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.74 -17.15 5.21 -52.64 -0.27 -17.43 16 10 C 0.17 3.11 4.47 -67.12 -0.30 2.81 16 11 C -0.16 -2.45 7.45 -25.77 -0.19 -2.64 16 12 C -0.13 -1.53 3.76 -89.67 -0.34 -1.87 16 13 C 0.13 1.63 5.51 -4.04 -0.02 1.61 16 14 N -0.72 -7.51 5.56 -60.29 -0.33 -7.84 16 15 C 0.51 6.32 7.91 -10.99 -0.09 6.24 16 16 O -0.52 -9.06 16.50 -14.36 -0.24 -9.30 16 17 C 0.04 0.39 6.23 36.00 0.22 0.62 16 18 O -0.36 -3.99 9.52 -55.14 -0.53 -4.51 16 19 C 0.09 0.69 2.61 -26.73 -0.07 0.62 16 20 C -0.14 -0.96 5.54 -26.73 -0.15 -1.11 16 21 C -0.12 -0.60 5.92 -26.74 -0.16 -0.76 16 22 C -0.12 -0.62 5.92 -26.73 -0.16 -0.78 16 23 C -0.12 -0.63 5.92 -26.73 -0.16 -0.79 16 24 C -0.12 -0.86 5.57 -26.73 -0.15 -1.01 16 25 C -0.14 -2.11 7.39 -25.92 -0.19 -2.30 16 26 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 27 H 0.36 8.36 5.77 -40.82 -0.24 8.12 16 28 H 0.08 1.52 8.11 -51.93 -0.42 1.10 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.29 7.90 -51.93 -0.41 0.88 16 31 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.98 7.85 -51.93 -0.41 0.57 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.40 2.94 8.47 -40.82 -0.35 2.59 16 35 H 0.08 0.49 7.87 -51.93 -0.41 0.08 16 36 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 37 H 0.06 0.40 7.79 -51.93 -0.40 -0.01 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.40 7.87 -51.93 -0.41 -0.01 16 40 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 49 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 389.38 15.07 5.87 5.87 Total: -1.00 -34.54 389.38 -10.41 -44.95 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -8.97 Total: 5.65 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -2.00 Total: -6.41 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.17 Total: -53.66 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.76 Total: -13.81 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.42 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.54 -10.41 -44.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100470103.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.247 kcal (2) G-P(sol) polarization free energy of solvation -34.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds