Wall clock time and date at job start Fri Apr 10 2020 22:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86805 * 120.00048 * 2 1 4 4 H 1.48491 * 109.47113 * 269.99813 * 3 2 1 5 5 H 1.48503 * 109.46988 * 30.00004 * 3 2 1 6 6 H 1.48501 * 109.46739 * 149.99998 * 3 2 1 7 7 C 1.38812 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00187 * 359.97438 * 7 2 1 9 9 N 1.36944 * 119.99770 * 180.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 12 12 C 1.54049 * 86.98426 * 140.01639 * 11 10 9 13 13 C 1.53002 * 113.62024 * 220.02020 * 12 11 10 14 14 N 1.46500 * 109.47425 * 272.50011 * 13 12 11 15 15 C 1.34772 * 120.00059 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00308 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00066 * 180.02562 * 15 14 13 18 18 O 1.42899 * 109.47490 * 179.97438 * 17 15 14 19 19 C 1.42906 * 114.00097 * 179.97438 * 18 17 15 20 20 C 1.53000 * 109.47059 * 270.00033 * 19 18 17 21 21 C 1.52996 * 109.46893 * 179.97438 * 20 19 18 22 22 C 1.52995 * 109.47126 * 60.00075 * 21 20 19 23 23 C 1.53000 * 109.47411 * 300.00255 * 22 21 20 24 24 C 1.52996 * 109.47184 * 59.99780 * 23 22 21 25 25 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 26 26 H 0.97005 * 119.99972 * 359.97438 * 1 2 3 27 27 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 28 28 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 29 29 H 1.08992 * 113.61675 * 254.61383 * 11 10 9 30 30 H 1.09000 * 113.60973 * 25.51671 * 11 10 9 31 31 H 1.08996 * 113.68970 * 89.12734 * 12 11 10 32 32 H 1.08997 * 109.47064 * 32.50151 * 13 12 11 33 33 H 1.09006 * 109.47182 * 152.49563 * 13 12 11 34 34 H 0.96996 * 119.99355 * 359.97438 * 14 13 12 35 35 H 1.09005 * 109.47018 * 300.00068 * 17 15 14 36 36 H 1.09006 * 109.47329 * 59.99263 * 17 15 14 37 37 H 1.08999 * 109.46972 * 30.00551 * 19 18 17 38 38 H 1.08996 * 109.47266 * 300.00450 * 20 19 18 39 39 H 1.09004 * 109.46630 * 60.00205 * 20 19 18 40 40 H 1.09005 * 109.46993 * 300.00016 * 21 20 19 41 41 H 1.09000 * 109.46964 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.47388 * 179.97438 * 22 21 20 43 43 H 1.09005 * 109.47232 * 60.00088 * 22 21 20 44 44 H 1.09002 * 109.46400 * 299.99758 * 23 22 21 45 45 H 1.09001 * 109.47351 * 179.97438 * 23 22 21 46 46 H 1.08996 * 109.46998 * 180.02562 * 24 23 22 47 47 H 1.08996 * 109.47534 * 60.00181 * 24 23 22 48 48 H 1.08999 * 113.61567 * 334.48111 * 25 10 9 49 49 H 1.08998 * 113.61196 * 105.38466 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4709 0.0000 11 6 4.7541 -2.8117 -1.3553 12 6 5.9717 -3.3183 -0.5591 13 6 7.3147 -2.9532 -1.1946 14 7 7.6946 -3.9864 -2.1613 15 6 8.8493 -3.8754 -2.8474 16 8 9.5737 -2.9199 -2.6649 17 6 9.2398 -4.9379 -3.8421 18 8 10.4942 -4.5969 -4.4356 19 6 10.9583 -5.5450 -5.3989 20 6 11.8129 -6.6047 -4.7008 21 6 12.3093 -7.6201 -5.7320 22 6 13.1500 -6.9028 -6.7901 23 6 12.2955 -5.8430 -7.4882 24 6 11.7991 -4.8276 -6.4570 25 6 5.5392 -2.3583 0.5617 26 1 -0.4850 0.8401 0.0004 27 1 3.8646 -0.3622 0.0004 28 1 3.5373 -3.2915 0.4295 29 1 4.2305 -3.5962 -1.9015 30 1 4.9674 -1.9368 -1.9695 31 1 5.9067 -4.3704 -0.2820 32 1 7.2267 -1.9937 -1.7041 33 1 8.0770 -2.8837 -0.4185 34 1 7.1154 -4.7507 -2.3069 35 1 9.3272 -5.8977 -3.3330 36 1 8.4777 -5.0065 -4.6185 37 1 10.1044 -6.0243 -5.8776 38 1 12.6668 -6.1254 -4.2221 39 1 11.2137 -7.1160 -3.9473 40 1 11.4550 -8.0994 -6.2103 41 1 12.9178 -8.3753 -5.2346 42 1 13.5040 -7.6262 -7.5246 43 1 14.0043 -6.4235 -6.3119 44 1 11.4413 -6.3224 -7.9665 45 1 12.8946 -5.3317 -8.2418 46 1 11.1900 -4.0729 -6.9542 47 1 12.6533 -4.3483 -5.9787 48 1 5.9668 -1.3598 0.4705 49 1 5.6490 -2.7772 1.5620 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100470103.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:02 Heat of formation + Delta-G solvation = -95.943798 kcal Electronic energy + Delta-G solvation = -25010.698965 eV Core-core repulsion = 21357.796082 eV Total energy + Delta-G solvation = -3652.902883 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03381 -40.16102 -39.60503 -37.25953 -36.10625 -35.03006 -32.79065 -31.73140 -31.16461 -29.71273 -27.53933 -26.46832 -25.41157 -23.53602 -23.12597 -22.41464 -21.80611 -20.87469 -20.62120 -19.36133 -18.27713 -17.99836 -17.10775 -16.90035 -16.71832 -16.18770 -16.14986 -15.84836 -15.48598 -15.24058 -14.90291 -14.75063 -14.62819 -14.35282 -13.96884 -13.88362 -13.58301 -13.25911 -13.23300 -13.14240 -13.04837 -13.01332 -12.66965 -12.15885 -12.06895 -11.99367 -11.91509 -11.71347 -11.58614 -11.50535 -11.46627 -11.24888 -11.13612 -10.89348 -10.77693 -10.42479 -10.09270 -9.26431 -8.03072 -5.35105 1.37282 1.39391 1.46613 1.56629 1.82503 2.47397 2.95205 3.27657 3.59205 3.65044 3.72898 3.78310 3.81524 3.91842 4.07032 4.10037 4.16738 4.23117 4.28038 4.29043 4.34710 4.36587 4.38547 4.55677 4.56147 4.58051 4.67597 4.76715 4.94524 4.95909 4.97502 5.03593 5.04319 5.12168 5.22533 5.22624 5.23655 5.30917 5.32819 5.38838 5.42908 5.50967 5.66726 5.78373 6.16106 6.23048 6.57587 7.08054 7.23692 7.86781 8.03943 9.18378 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.031090 B = 0.001863 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.380555 B =15022.165002 C =15235.216600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.065 4.065 3 Si 0.952 3.048 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.253 1.253 7 C -0.231 4.231 8 H 0.061 0.939 9 N -0.745 5.745 10 C 0.144 3.856 11 C -0.155 4.155 12 C -0.095 4.095 13 C 0.138 3.862 14 N -0.710 5.710 15 C 0.505 3.495 16 O -0.581 6.581 17 C 0.046 3.954 18 O -0.393 6.393 19 C 0.085 3.915 20 C -0.140 4.140 21 C -0.114 4.114 22 C -0.124 4.124 23 C -0.112 4.112 24 C -0.119 4.119 25 C -0.137 4.137 26 H 0.257 0.743 27 H 0.364 0.636 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.123 0.877 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.419 0.581 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.055 0.945 48 H 0.074 0.926 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.045 -19.778 -12.777 35.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.257 4.257 3 Si 0.779 3.221 4 H -0.208 1.208 5 H -0.223 1.223 6 H -0.178 1.178 7 C -0.362 4.362 8 H 0.079 0.921 9 N -0.386 5.386 10 C 0.036 3.964 11 C -0.195 4.195 12 C -0.114 4.114 13 C 0.014 3.986 14 N -0.364 5.364 15 C 0.292 3.708 16 O -0.460 6.460 17 C -0.033 4.033 18 O -0.312 6.312 19 C 0.028 3.972 20 C -0.178 4.178 21 C -0.151 4.151 22 C -0.162 4.162 23 C -0.149 4.149 24 C -0.157 4.157 25 C -0.176 4.176 26 H 0.066 0.934 27 H 0.197 0.803 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.141 0.859 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.256 0.744 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.093 0.907 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 27.436 -19.010 -12.581 35.671 hybrid contribution -0.508 1.070 0.060 1.186 sum 26.928 -17.940 -12.521 34.695 Atomic orbital electron populations 1.69876 1.07038 1.26549 1.59947 1.25484 0.96095 1.01117 1.02970 0.85455 0.78672 0.80005 0.77929 1.20791 1.22300 1.17779 1.19141 0.82851 0.93480 1.40726 0.92122 1.42813 1.02451 1.04082 1.89274 1.21957 0.90849 0.87941 0.95691 1.23785 0.96883 1.00476 0.98351 1.22519 0.91545 1.00949 0.96378 1.21247 0.95835 0.90555 0.90971 1.45774 1.21979 1.26902 1.41725 1.20952 0.80969 0.87182 0.81683 1.90715 1.53184 1.34911 1.67169 1.22370 0.88082 0.96585 0.96266 1.88025 1.36342 1.48729 1.58079 1.22372 0.96925 0.89244 0.88646 1.22038 1.00049 0.96820 0.98918 1.21494 1.00273 0.97205 0.96162 1.21600 0.98188 0.98078 0.98289 1.21495 1.00239 0.96217 0.96997 1.21611 0.99444 0.98647 0.95959 1.23350 0.95742 0.99662 0.98866 0.93437 0.80266 0.90293 0.91310 0.91868 0.85862 0.93326 0.91666 0.74360 0.87312 0.87607 0.90139 0.92676 0.91114 0.90782 0.90980 0.90569 0.92533 0.90796 0.90898 0.91941 0.92596 0.90738 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.16 13.97 21.65 0.30 -62.86 16 2 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 3 Si 0.95 46.05 27.74 68.60 1.90 47.95 16 4 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 5 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 6 H -0.25 -11.11 6.52 99.48 0.65 -10.46 16 7 C -0.23 -13.04 10.45 84.03 0.88 -12.16 16 8 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 9 N -0.75 -34.15 5.21 -320.44 -1.67 -35.82 16 10 C 0.14 5.02 4.47 45.52 0.20 5.23 16 11 C -0.15 -4.39 7.45 31.21 0.23 -4.16 16 12 C -0.09 -1.99 3.76 -10.18 -0.04 -2.03 16 13 C 0.14 3.06 5.51 86.38 0.48 3.53 16 14 N -0.71 -12.76 5.56 -463.06 -2.57 -15.34 16 15 C 0.51 11.70 7.91 87.66 0.69 12.39 16 16 O -0.58 -20.15 16.50 16.00 0.26 -19.89 16 17 C 0.05 0.70 6.23 71.23 0.44 1.14 16 18 O -0.39 -8.37 9.52 -129.94 -1.24 -9.60 16 19 C 0.09 1.20 2.61 30.59 0.08 1.28 16 20 C -0.14 -1.66 5.54 30.59 0.17 -1.49 16 21 C -0.11 -0.92 5.92 30.59 0.18 -0.74 16 22 C -0.12 -1.04 5.92 30.59 0.18 -0.86 16 23 C -0.11 -1.04 5.92 30.59 0.18 -0.86 16 24 C -0.12 -1.69 5.57 30.59 0.17 -1.52 16 25 C -0.14 -3.63 7.39 31.12 0.23 -3.40 16 26 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 27 H 0.36 16.29 5.77 -92.71 -0.53 15.75 16 28 H 0.08 2.80 8.11 -2.39 -0.02 2.78 16 29 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 2.01 7.90 -2.39 -0.02 2.00 16 31 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.31 7.85 -2.39 -0.02 1.30 16 33 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.42 4.47 8.47 -92.71 -0.79 3.68 16 35 H 0.11 0.96 7.87 -2.38 -0.02 0.94 16 36 H 0.11 1.04 8.09 -2.38 -0.02 1.02 16 37 H 0.08 0.80 7.79 -2.39 -0.02 0.78 16 38 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 0.72 7.87 -2.39 -0.02 0.70 16 40 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 41 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 44 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 49 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -78.10 389.38 1.08 -77.02 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -0.46 Total: 25.57 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 4.55 Total: -7.03 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -3.94 Total: -114.01 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.97 Total: -29.49 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.90 Total: 47.95 kcal Total: -78.10 1.08 -77.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100470103.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.928 kcal (2) G-P(sol) polarization free energy of solvation -78.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds