Wall clock time and date at job start Fri Apr 10 2020 22:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48497 * 109.47173 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00250 * 3 2 1 6 6 H 1.48501 * 109.47438 * 240.00370 * 3 2 1 7 7 C 1.38812 * 119.99535 * 180.28285 * 2 1 3 8 8 H 1.08002 * 119.99473 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00122 * 180.02562 * 9 7 2 11 11 C 1.53784 * 113.61464 * 252.49307 * 10 9 7 12 12 C 1.53777 * 87.08514 * 270.88878 * 11 10 9 13 13 C 1.53000 * 113.61370 * 220.02142 * 12 11 10 14 14 N 1.46495 * 109.47258 * 272.49654 * 13 12 11 15 15 C 1.34777 * 120.00780 * 180.02562 * 14 13 12 16 16 O 1.21280 * 119.99476 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00632 * 179.97438 * 15 14 13 18 18 C 1.53003 * 109.47435 * 179.97438 * 17 15 14 19 19 C 1.52993 * 109.47057 * 179.97438 * 18 17 15 20 20 H 1.08999 * 109.52510 * 305.00205 * 19 18 17 21 21 C 1.53182 * 109.52143 * 184.87458 * 19 18 17 22 22 C 1.53170 * 109.03604 * 183.11519 * 21 19 18 23 23 C 1.53092 * 109.16552 * 56.98039 * 22 21 19 24 24 O 1.42901 * 109.41543 * 302.38865 * 23 22 21 25 25 C 1.42916 * 114.15176 * 61.12733 * 24 23 22 26 26 C 1.53780 * 87.07844 * 334.56433 * 12 11 10 27 27 H 0.97005 * 119.99717 * 359.71788 * 1 2 3 28 28 H 0.97001 * 120.00088 * 0.02562 * 9 7 2 29 29 H 1.08993 * 112.85114 * 23.80585 * 10 9 7 30 30 H 1.09005 * 113.60981 * 25.43768 * 11 10 9 31 31 H 1.08998 * 113.61110 * 156.33518 * 11 10 9 32 32 H 1.08994 * 113.61778 * 89.11604 * 12 11 10 33 33 H 1.09001 * 109.47212 * 32.49562 * 13 12 11 34 34 H 1.08997 * 109.47735 * 152.49454 * 13 12 11 35 35 H 0.97009 * 119.99513 * 359.97438 * 14 13 12 36 36 H 1.09001 * 109.47162 * 300.00148 * 17 15 14 37 37 H 1.09004 * 109.47206 * 59.99549 * 17 15 14 38 38 H 1.08997 * 109.46722 * 300.00146 * 18 17 15 39 39 H 1.08999 * 109.46720 * 59.99778 * 18 17 15 40 40 H 1.09004 * 109.54132 * 302.98588 * 21 19 18 41 41 H 1.09000 * 109.54236 * 63.24688 * 21 19 18 42 42 H 1.09000 * 109.52225 * 176.88907 * 22 21 19 43 43 H 1.09004 * 109.52685 * 297.07314 * 22 21 19 44 44 H 1.09007 * 109.47956 * 62.37669 * 23 22 21 45 45 H 1.08999 * 109.48174 * 182.39351 * 23 22 21 46 46 H 1.08992 * 109.53613 * 178.92523 * 25 24 23 47 47 H 1.09000 * 109.42802 * 58.88579 * 25 24 23 48 48 H 1.08997 * 113.62326 * 270.88274 * 26 12 11 49 49 H 1.09001 * 113.61317 * 139.98379 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 0.0006 5 1 3.1041 1.6962 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0064 9 7 1.3255 -2.3880 -0.0113 10 6 2.0580 -3.6568 -0.0170 11 6 1.9989 -4.3961 -1.3641 12 6 0.7202 -5.0753 -0.8460 13 6 0.6193 -6.5562 -1.2171 14 7 -0.0125 -6.6880 -2.5322 15 6 -0.2073 -7.9098 -3.0670 16 8 0.1409 -8.9000 -2.4595 17 6 -0.8578 -8.0454 -4.4195 18 6 -0.9586 -9.5263 -4.7908 19 6 -1.6195 -9.6639 -6.1637 20 1 -2.5814 -9.1513 -6.1580 21 6 -1.8317 -11.1469 -6.4833 22 6 -2.4216 -11.2752 -7.8910 23 6 -1.4856 -10.5932 -8.8923 24 8 -1.3067 -9.2253 -8.5196 25 6 -0.7152 -9.0428 -7.2315 26 6 1.2600 -4.8314 0.5732 27 1 -0.4850 0.8401 0.0041 28 1 0.3555 -2.3880 -0.0113 29 1 3.0655 -3.5657 0.3889 30 1 1.8291 -3.7380 -2.2163 31 1 2.8277 -5.0867 -1.5198 32 1 -0.1904 -4.5192 -1.0683 33 1 1.6180 -6.9918 -1.2485 34 1 0.0189 -7.0776 -0.4717 35 1 -0.2913 -5.8960 -3.0179 36 1 -1.8563 -7.6096 -4.3878 37 1 -0.2575 -7.5242 -5.1653 38 1 0.0402 -9.9616 -4.8226 39 1 -1.5587 -10.0477 -4.0451 40 1 -0.8762 -11.6697 -6.4393 41 1 -2.5202 -11.5813 -5.7584 42 1 -2.5244 -12.3294 -8.1482 43 1 -3.3997 -10.7950 -7.9213 44 1 -0.5204 -11.0998 -8.8908 45 1 -1.9213 -10.6443 -9.8901 46 1 -0.5965 -7.9777 -7.0326 47 1 0.2606 -9.5280 -7.2085 48 1 1.8868 -5.6410 0.9472 49 1 0.4937 -4.5248 1.2851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100806929.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:07 Heat of formation + Delta-G solvation = -80.907116 kcal Electronic energy + Delta-G solvation = -25094.776897 eV Core-core repulsion = 21442.526054 eV Total energy + Delta-G solvation = -3652.250843 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.14352 -39.53732 -38.50670 -35.46808 -34.61324 -33.24052 -33.05868 -30.51942 -29.87366 -27.41806 -25.44549 -25.12227 -25.01223 -23.66076 -22.14062 -21.53901 -20.45002 -20.28796 -18.40905 -17.44043 -17.06509 -16.73750 -16.29080 -15.99909 -15.72574 -15.16891 -14.93129 -14.77515 -14.38411 -14.15494 -14.01662 -13.74948 -13.47058 -13.05344 -13.01030 -12.89916 -12.59669 -12.28398 -12.09779 -11.93322 -11.68058 -11.53079 -11.39326 -11.10160 -11.06234 -10.91159 -10.84458 -10.61212 -10.50516 -10.22710 -10.12446 -9.80013 -9.76015 -9.70848 -9.46160 -8.99342 -8.89483 -7.02453 -5.82799 -3.11911 2.62221 3.19238 3.41053 3.45629 3.46493 3.51501 4.28764 4.34884 4.40053 4.52918 4.53930 4.63777 4.80811 4.89814 4.92949 5.03910 5.05475 5.09376 5.13077 5.21119 5.29149 5.30477 5.38031 5.43232 5.46868 5.48993 5.57829 5.61308 5.69418 5.72352 5.78313 5.85844 5.89155 5.95014 6.04151 6.09700 6.19585 6.35474 6.42946 6.57848 6.72466 6.83169 6.88457 7.02341 7.51823 7.66496 8.21718 8.36395 9.46982 10.04441 10.38705 11.39522 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021320 B = 0.001965 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.021470 B =14244.129413 C =15129.713893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.909 3.091 4 H -0.291 1.291 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.167 3.833 11 C -0.168 4.168 12 C -0.119 4.119 13 C 0.130 3.870 14 N -0.725 5.725 15 C 0.509 3.491 16 O -0.549 6.549 17 C -0.145 4.145 18 C -0.095 4.095 19 C -0.124 4.124 20 H 0.081 0.919 21 C -0.118 4.118 22 C -0.157 4.157 23 C 0.059 3.941 24 O -0.383 6.383 25 C 0.062 3.938 26 C -0.148 4.148 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.403 0.597 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.049 0.951 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.051 0.949 48 H 0.076 0.924 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.060 -22.379 -14.351 26.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 C -0.209 4.209 12 C -0.138 4.138 13 C 0.007 3.993 14 N -0.377 5.377 15 C 0.295 3.705 16 O -0.427 6.427 17 C -0.185 4.185 18 C -0.133 4.133 19 C -0.143 4.143 20 H 0.099 0.901 21 C -0.155 4.155 22 C -0.194 4.194 23 C -0.018 4.018 24 O -0.302 6.302 25 C -0.015 4.015 26 C -0.188 4.188 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.237 0.763 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.067 0.933 45 H 0.110 0.890 46 H 0.114 0.886 47 H 0.069 0.931 48 H 0.095 0.905 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.744 -22.744 -14.001 26.969 hybrid contribution -0.017 1.081 -0.063 1.083 sum -3.761 -21.663 -14.064 26.100 Atomic orbital electron populations 1.69654 1.05133 1.25914 1.57382 1.24768 0.95555 0.97805 1.02756 0.86235 0.78511 0.83340 0.77898 1.21679 1.21201 1.21209 1.19248 0.91100 0.83987 1.43102 0.91042 1.42157 1.05664 0.99420 1.87155 1.21059 0.95113 0.85606 0.92767 1.23885 0.95667 0.99600 1.01760 1.22704 0.99543 0.92990 0.98566 1.21465 0.97545 0.96984 0.83294 1.46132 1.62117 1.08299 1.21104 1.20691 0.78855 0.83168 0.87779 1.90688 1.51482 1.37365 1.63165 1.21765 1.02476 0.99466 0.94806 1.21305 1.02043 0.94588 0.95413 1.21852 1.00453 0.96802 0.95170 0.90073 1.21631 1.01485 0.95844 0.96569 1.22200 1.00213 1.01277 0.95754 1.22583 0.98368 0.82718 0.98142 1.87945 1.82656 1.25172 1.34413 1.22756 0.94941 1.01517 0.82274 1.23447 1.00500 0.99699 0.95153 0.93384 0.78120 0.91973 0.91518 0.91451 0.88916 0.91688 0.91960 0.76313 0.88716 0.88821 0.91018 0.90756 0.91665 0.91248 0.90908 0.91010 0.93262 0.89007 0.88596 0.93053 0.90494 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -17.18 5.31 -52.64 -0.28 -17.46 16 10 C 0.17 3.21 4.56 -67.12 -0.31 2.91 16 11 C -0.17 -2.74 7.43 -25.92 -0.19 -2.94 16 12 C -0.12 -1.75 3.63 -89.81 -0.33 -2.07 16 13 C 0.13 1.72 5.51 -4.04 -0.02 1.70 16 14 N -0.73 -8.45 5.56 -60.30 -0.33 -8.78 16 15 C 0.51 6.14 7.83 -10.99 -0.09 6.06 16 16 O -0.55 -8.71 15.98 5.56 0.09 -8.62 16 17 C -0.15 -1.19 5.46 -27.88 -0.15 -1.34 16 18 C -0.10 -0.79 3.98 -26.73 -0.11 -0.89 16 19 C -0.12 -0.88 2.39 -90.48 -0.22 -1.10 16 20 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 21 C -0.12 -0.77 5.31 -26.55 -0.14 -0.91 16 22 C -0.16 -0.93 6.14 -26.60 -0.16 -1.10 16 23 C 0.06 0.39 6.84 37.20 0.25 0.65 16 24 O -0.38 -3.52 10.76 -35.23 -0.38 -3.90 16 25 C 0.06 0.47 5.83 37.21 0.22 0.69 16 26 C -0.15 -2.35 7.39 -25.92 -0.19 -2.54 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.38 9.90 7.90 -40.82 -0.32 9.58 16 29 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.07 0.99 7.90 -51.93 -0.41 0.58 16 32 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.06 0.90 7.84 -51.93 -0.41 0.49 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.40 3.99 8.47 -40.82 -0.35 3.64 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.63 6.63 -51.93 -0.34 0.28 16 38 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 39 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.05 0.30 8.14 -51.92 -0.42 -0.12 16 45 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.10 0.66 6.70 -51.93 -0.35 0.31 16 47 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.08 1.07 8.10 -51.93 -0.42 0.64 16 49 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 389.13 15.07 5.86 5.86 Total: -1.00 -31.94 389.13 -9.92 -41.86 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -8.90 Total: 9.03 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -1.68 Total: -8.12 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.11 Total: -53.11 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.29 Total: -12.53 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.94 -9.92 -41.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100806929.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.047 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds