Wall clock time and date at job start Fri Apr 10 2020 22:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48497 * 109.47173 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00250 * 3 2 1 6 6 H 1.48501 * 109.47438 * 240.00370 * 3 2 1 7 7 C 1.38812 * 119.99535 * 180.28285 * 2 1 3 8 8 H 1.08002 * 119.99473 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00122 * 180.02562 * 9 7 2 11 11 C 1.53784 * 113.61464 * 252.49307 * 10 9 7 12 12 C 1.53777 * 87.08514 * 270.88878 * 11 10 9 13 13 C 1.53000 * 113.61370 * 220.02142 * 12 11 10 14 14 N 1.46495 * 109.47258 * 272.49654 * 13 12 11 15 15 C 1.34777 * 120.00780 * 180.02562 * 14 13 12 16 16 O 1.21280 * 119.99476 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00632 * 179.97438 * 15 14 13 18 18 C 1.53003 * 109.47435 * 179.97438 * 17 15 14 19 19 C 1.52993 * 109.47057 * 179.97438 * 18 17 15 20 20 H 1.08999 * 109.52510 * 305.00205 * 19 18 17 21 21 C 1.53182 * 109.52143 * 184.87458 * 19 18 17 22 22 C 1.53170 * 109.03604 * 183.11519 * 21 19 18 23 23 C 1.53092 * 109.16552 * 56.98039 * 22 21 19 24 24 O 1.42901 * 109.41543 * 302.38865 * 23 22 21 25 25 C 1.42916 * 114.15176 * 61.12733 * 24 23 22 26 26 C 1.53780 * 87.07844 * 334.56433 * 12 11 10 27 27 H 0.97005 * 119.99717 * 359.71788 * 1 2 3 28 28 H 0.97001 * 120.00088 * 0.02562 * 9 7 2 29 29 H 1.08993 * 112.85114 * 23.80585 * 10 9 7 30 30 H 1.09005 * 113.60981 * 25.43768 * 11 10 9 31 31 H 1.08998 * 113.61110 * 156.33518 * 11 10 9 32 32 H 1.08994 * 113.61778 * 89.11604 * 12 11 10 33 33 H 1.09001 * 109.47212 * 32.49562 * 13 12 11 34 34 H 1.08997 * 109.47735 * 152.49454 * 13 12 11 35 35 H 0.97009 * 119.99513 * 359.97438 * 14 13 12 36 36 H 1.09001 * 109.47162 * 300.00148 * 17 15 14 37 37 H 1.09004 * 109.47206 * 59.99549 * 17 15 14 38 38 H 1.08997 * 109.46722 * 300.00146 * 18 17 15 39 39 H 1.08999 * 109.46720 * 59.99778 * 18 17 15 40 40 H 1.09004 * 109.54132 * 302.98588 * 21 19 18 41 41 H 1.09000 * 109.54236 * 63.24688 * 21 19 18 42 42 H 1.09000 * 109.52225 * 176.88907 * 22 21 19 43 43 H 1.09004 * 109.52685 * 297.07314 * 22 21 19 44 44 H 1.09007 * 109.47956 * 62.37669 * 23 22 21 45 45 H 1.08999 * 109.48174 * 182.39351 * 23 22 21 46 46 H 1.08992 * 109.53613 * 178.92523 * 25 24 23 47 47 H 1.09000 * 109.42802 * 58.88579 * 25 24 23 48 48 H 1.08997 * 113.62326 * 270.88274 * 26 12 11 49 49 H 1.09001 * 113.61317 * 139.98379 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 0.0006 5 1 3.1041 1.6962 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0064 9 7 1.3255 -2.3880 -0.0113 10 6 2.0580 -3.6568 -0.0170 11 6 1.9989 -4.3961 -1.3641 12 6 0.7202 -5.0753 -0.8460 13 6 0.6193 -6.5562 -1.2171 14 7 -0.0125 -6.6880 -2.5322 15 6 -0.2073 -7.9098 -3.0670 16 8 0.1409 -8.9000 -2.4595 17 6 -0.8578 -8.0454 -4.4195 18 6 -0.9586 -9.5263 -4.7908 19 6 -1.6195 -9.6639 -6.1637 20 1 -2.5814 -9.1513 -6.1580 21 6 -1.8317 -11.1469 -6.4833 22 6 -2.4216 -11.2752 -7.8910 23 6 -1.4856 -10.5932 -8.8923 24 8 -1.3067 -9.2253 -8.5196 25 6 -0.7152 -9.0428 -7.2315 26 6 1.2600 -4.8314 0.5732 27 1 -0.4850 0.8401 0.0041 28 1 0.3555 -2.3880 -0.0113 29 1 3.0655 -3.5657 0.3889 30 1 1.8291 -3.7380 -2.2163 31 1 2.8277 -5.0867 -1.5198 32 1 -0.1904 -4.5192 -1.0683 33 1 1.6180 -6.9918 -1.2485 34 1 0.0189 -7.0776 -0.4717 35 1 -0.2913 -5.8960 -3.0179 36 1 -1.8563 -7.6096 -4.3878 37 1 -0.2575 -7.5242 -5.1653 38 1 0.0402 -9.9616 -4.8226 39 1 -1.5587 -10.0477 -4.0451 40 1 -0.8762 -11.6697 -6.4393 41 1 -2.5202 -11.5813 -5.7584 42 1 -2.5244 -12.3294 -8.1482 43 1 -3.3997 -10.7950 -7.9213 44 1 -0.5204 -11.0998 -8.8908 45 1 -1.9213 -10.6443 -9.8901 46 1 -0.5965 -7.9777 -7.0326 47 1 0.2606 -9.5280 -7.2085 48 1 1.8868 -5.6410 0.9472 49 1 0.4937 -4.5248 1.2851 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100806929.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:06 Heat of formation + Delta-G solvation = -101.541840 kcal Electronic energy + Delta-G solvation = -25095.671686 eV Core-core repulsion = 21442.526054 eV Total energy + Delta-G solvation = -3653.145632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.02163 -40.33739 -39.77890 -36.21333 -35.85359 -34.92345 -33.65158 -32.11743 -30.84240 -28.61259 -26.43468 -26.09226 -25.93796 -25.34090 -23.20000 -22.47321 -21.22249 -21.00142 -19.79974 -19.32029 -18.04549 -17.35456 -17.10315 -16.93863 -16.65153 -16.54994 -15.94484 -15.70483 -15.65040 -15.26867 -14.99706 -14.77705 -14.65047 -14.40790 -14.09667 -13.64856 -13.54484 -13.28104 -13.23518 -12.91276 -12.90555 -12.72837 -12.60497 -12.24597 -12.19872 -12.06865 -12.06158 -11.72517 -11.54415 -11.48271 -11.45197 -11.15195 -11.01687 -10.87137 -10.66959 -10.36391 -10.02313 -8.99637 -7.95039 -5.23254 1.48459 1.50799 1.56927 1.68395 2.27511 2.56189 2.97999 3.37362 3.67580 3.71523 3.73763 3.80316 3.81773 3.89311 3.99594 4.04282 4.16534 4.27373 4.30183 4.33558 4.35817 4.41758 4.54628 4.59539 4.65513 4.73831 4.76632 4.80075 4.85862 4.92216 4.92972 4.95331 4.99799 5.09300 5.12170 5.16281 5.24033 5.27268 5.31349 5.36526 5.45700 5.50692 5.57655 5.66855 6.28478 6.28725 6.59789 7.28588 7.33599 8.10803 8.33250 9.27899 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021320 B = 0.001965 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.021470 B =14244.129413 C =15129.713893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.973 3.027 4 H -0.296 1.296 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.143 3.857 11 C -0.152 4.152 12 C -0.101 4.101 13 C 0.139 3.861 14 N -0.721 5.721 15 C 0.506 3.494 16 O -0.590 6.590 17 C -0.139 4.139 18 C -0.089 4.089 19 C -0.116 4.116 20 H 0.082 0.918 21 C -0.120 4.120 22 C -0.153 4.153 23 C 0.052 3.948 24 O -0.405 6.405 25 C 0.059 3.941 26 C -0.136 4.136 27 H 0.251 0.749 28 H 0.374 0.626 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.412 0.588 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.054 0.946 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.052 0.948 48 H 0.104 0.896 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.582 -23.275 -15.305 28.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.223 1.223 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.094 0.906 9 N -0.357 5.357 10 C 0.032 3.968 11 C -0.193 4.193 12 C -0.120 4.120 13 C 0.016 3.984 14 N -0.373 5.373 15 C 0.295 3.705 16 O -0.471 6.471 17 C -0.178 4.178 18 C -0.127 4.127 19 C -0.134 4.134 20 H 0.100 0.900 21 C -0.158 4.158 22 C -0.190 4.190 23 C -0.024 4.024 24 O -0.324 6.324 25 C -0.018 4.018 26 C -0.175 4.175 27 H 0.060 0.940 28 H 0.207 0.793 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.248 0.752 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.070 0.930 48 H 0.122 0.878 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.234 -23.668 -14.972 28.192 hybrid contribution -0.114 1.270 0.243 1.298 sum -3.348 -22.398 -14.728 27.015 Atomic orbital electron populations 1.69805 1.06523 1.26130 1.59421 1.25551 0.96401 1.01044 1.03749 0.85219 0.77187 0.79233 0.78156 1.22271 1.20502 1.20406 1.19634 0.91520 0.85219 1.41191 0.90607 1.42280 1.05305 1.00510 1.87641 1.21395 0.95045 0.84951 0.95358 1.23698 0.97292 0.99165 0.99099 1.22478 0.98307 0.93782 0.97407 1.21252 0.97683 0.95372 0.84131 1.46100 1.61728 1.08858 1.20597 1.21326 0.78092 0.82410 0.88689 1.90672 1.53279 1.38604 1.64496 1.21807 1.03442 0.99772 0.92786 1.21211 1.01259 0.94469 0.95727 1.21758 1.00186 0.97255 0.94233 0.89988 1.21658 1.01591 0.95445 0.97092 1.22175 0.99701 1.02073 0.95091 1.22756 0.98937 0.81859 0.98885 1.87913 1.82878 1.26619 1.35018 1.22830 0.94943 1.02042 0.81954 1.23354 0.99970 0.98649 0.95546 0.94024 0.79342 0.92292 0.93243 0.89153 0.89993 0.91709 0.92244 0.75160 0.86774 0.86806 0.92139 0.91956 0.91733 0.91079 0.89465 0.91361 0.92777 0.87968 0.87913 0.92980 0.87791 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.22 13.06 21.65 0.28 -57.93 16 2 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 3 Si 0.97 45.48 29.55 68.60 2.03 47.51 16 4 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.24 -13.30 9.97 84.03 0.84 -12.47 16 8 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.72 -35.21 5.31 -320.45 -1.70 -36.91 16 10 C 0.14 5.37 4.56 45.52 0.21 5.58 16 11 C -0.15 -4.73 7.43 31.12 0.23 -4.50 16 12 C -0.10 -2.81 3.63 -10.27 -0.04 -2.85 16 13 C 0.14 3.43 5.51 86.38 0.48 3.90 16 14 N -0.72 -15.50 5.56 -463.08 -2.57 -18.07 16 15 C 0.51 11.47 7.83 87.66 0.69 12.16 16 16 O -0.59 -18.23 15.98 -3.03 -0.05 -18.28 16 17 C -0.14 -1.99 5.46 29.85 0.16 -1.83 16 18 C -0.09 -1.36 3.98 30.59 0.12 -1.24 16 19 C -0.12 -1.48 2.39 -10.70 -0.03 -1.51 16 20 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 21 C -0.12 -1.42 5.31 30.71 0.16 -1.26 16 22 C -0.15 -1.59 6.14 30.68 0.19 -1.40 16 23 C 0.05 0.62 6.84 72.01 0.49 1.12 16 24 O -0.41 -6.93 10.76 -148.98 -1.60 -8.53 16 25 C 0.06 0.81 5.83 72.01 0.42 1.23 16 26 C -0.14 -4.11 7.39 31.12 0.23 -3.88 16 27 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 28 H 0.37 19.61 7.90 -92.71 -0.73 18.87 16 29 H 0.06 2.24 8.10 -2.39 -0.02 2.22 16 30 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.09 2.42 7.90 -2.39 -0.02 2.40 16 32 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.06 1.64 7.84 -2.39 -0.02 1.62 16 34 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 35 H 0.41 7.34 8.47 -92.70 -0.79 6.55 16 36 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.11 1.22 6.63 -2.38 -0.02 1.20 16 38 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 39 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 40 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 44 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 45 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.10 1.21 6.70 -2.39 -0.02 1.20 16 47 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.10 2.60 8.10 -2.39 -0.02 2.59 16 49 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -68.71 389.13 0.42 -68.30 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: -0.59 Total: 34.64 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 4.62 Total: -10.71 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -3.99 Total: -112.92 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -1.65 Total: -26.81 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -68.71 0.42 -68.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100806929.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.243 kcal (2) G-P(sol) polarization free energy of solvation -68.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds