Wall clock time and date at job start Fri Apr 10 2020 22:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99830 * 2 1 4 4 H 1.48499 * 109.47273 * 239.99654 * 3 2 1 5 5 H 1.48496 * 109.47243 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47183 * 119.99995 * 3 2 1 7 7 C 1.38807 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99884 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99949 * 179.97438 * 9 7 2 11 11 C 1.53783 * 113.61046 * 204.99833 * 10 9 7 12 12 C 1.53783 * 87.07912 * 219.93516 * 11 10 9 13 13 C 1.53000 * 113.61057 * 139.98267 * 12 11 10 14 14 N 1.46504 * 109.46987 * 176.52985 * 13 12 11 15 15 C 1.34773 * 120.00136 * 179.97438 * 14 13 12 16 16 O 1.21277 * 120.00015 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00020 * 180.02562 * 15 14 13 18 18 C 1.53005 * 109.47178 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.46965 * 179.97438 * 18 17 15 20 20 H 1.09002 * 109.52286 * 54.99930 * 19 18 17 21 21 C 1.53177 * 109.51896 * 175.12608 * 19 18 17 22 22 C 1.53181 * 109.03787 * 176.94962 * 21 19 18 23 23 C 1.53093 * 109.16218 * 303.01964 * 22 21 19 24 24 O 1.42905 * 109.41329 * 57.60476 * 23 22 21 25 25 C 1.43030 * 114.13728 * 298.83738 * 24 23 22 26 26 C 1.53786 * 87.17192 * 25.39124 * 12 11 10 27 27 H 0.97005 * 119.99775 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99808 * 359.97438 * 9 7 2 29 29 H 1.08997 * 112.85213 * 336.19653 * 10 9 7 30 30 H 1.09003 * 113.61113 * 105.39089 * 11 10 9 31 31 H 1.09000 * 113.61839 * 334.48476 * 11 10 9 32 32 H 1.08999 * 113.61718 * 270.80108 * 12 11 10 33 33 H 1.08992 * 109.47284 * 56.53404 * 13 12 11 34 34 H 1.08999 * 109.47119 * 296.52764 * 13 12 11 35 35 H 0.97005 * 119.99961 * 0.02562 * 14 13 12 36 36 H 1.09002 * 109.47519 * 60.00027 * 17 15 14 37 37 H 1.09004 * 109.47346 * 299.99559 * 17 15 14 38 38 H 1.09002 * 109.46983 * 59.99565 * 18 17 15 39 39 H 1.08999 * 109.46872 * 299.99619 * 18 17 15 40 40 H 1.09001 * 109.54414 * 296.81428 * 21 19 18 41 41 H 1.08998 * 109.54571 * 56.99363 * 21 19 18 42 42 H 1.09005 * 109.52357 * 62.91938 * 22 21 19 43 43 H 1.08991 * 109.52488 * 183.11066 * 22 21 19 44 44 H 1.09000 * 109.48150 * 177.58678 * 23 22 21 45 45 H 1.09002 * 109.47828 * 297.62549 * 23 22 21 46 46 H 1.08999 * 109.46933 * 301.19433 * 25 24 23 47 47 H 1.09000 * 109.57180 * 181.11227 * 25 24 23 48 48 H 1.08998 * 113.60976 * 89.15835 * 26 12 11 49 49 H 1.09003 * 113.61202 * 220.05607 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.2601 -4.8287 -0.5949 12 6 1.8497 -5.6981 0.5283 13 6 0.8478 -6.6867 1.1281 14 7 1.5224 -7.5207 2.1259 15 6 0.8320 -8.4690 2.7895 16 8 -0.3477 -8.6322 2.5604 17 6 1.5258 -9.3265 3.8162 18 6 0.5240 -10.3153 4.4160 19 6 1.2286 -11.1863 5.4580 20 1 1.7079 -10.5492 6.2013 21 6 0.2028 -12.0926 6.1455 22 6 0.9300 -13.0126 7.1311 23 6 1.9985 -13.8104 6.3790 24 8 2.9016 -12.9077 5.7374 25 6 2.2857 -12.0536 4.7694 26 6 2.0030 -4.4042 1.3453 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 3.0656 -3.5638 -0.4048 30 1 1.5908 -5.1202 -1.5919 31 1 0.1798 -4.7009 -0.5267 32 1 2.7996 -6.1644 0.2666 33 1 0.4448 -7.3199 0.3379 34 1 0.0353 -6.1371 1.6034 35 1 2.4659 -7.3900 2.3094 36 1 1.9290 -8.6930 4.6063 37 1 2.3383 -9.8764 3.3412 38 1 0.1212 -10.9488 3.6257 39 1 -0.2888 -9.7658 4.8910 40 1 -0.5212 -11.4810 6.6840 41 1 -0.3129 -12.6935 5.3965 42 1 1.4034 -12.4124 7.9082 43 1 0.2149 -13.6987 7.5845 44 1 2.5481 -14.4354 7.0828 45 1 1.5206 -14.4408 5.6290 46 1 1.8116 -12.6610 3.9984 47 1 3.0412 -11.4131 4.3143 48 1 1.1262 -4.1601 1.9450 49 1 2.9325 -4.3536 1.9125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100806930.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:11 Heat of formation + Delta-G solvation = -81.949897 kcal Electronic energy + Delta-G solvation = -24929.865802 eV Core-core repulsion = 21277.569741 eV Total energy + Delta-G solvation = -3652.296062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.17382 -39.56004 -38.45244 -35.49676 -34.64551 -33.30910 -33.09256 -30.56647 -29.95482 -27.42267 -25.48436 -25.14527 -25.04348 -23.77791 -22.04867 -21.03348 -20.48390 -20.32815 -19.04289 -17.30148 -17.01125 -16.77237 -16.33116 -16.08786 -15.78681 -15.18889 -14.94332 -14.74428 -14.67788 -14.22746 -13.87744 -13.78157 -13.46296 -13.06983 -13.04360 -12.96336 -12.56712 -12.16266 -11.90623 -11.83435 -11.69802 -11.55563 -11.39957 -11.23549 -11.13215 -10.94077 -10.83187 -10.65291 -10.54164 -10.25978 -10.17310 -9.84223 -9.83516 -9.81264 -9.48061 -9.02399 -8.87123 -6.97319 -5.78969 -3.07992 2.59366 3.14093 3.42533 3.46688 3.46989 3.48178 4.25478 4.31828 4.37006 4.50039 4.57530 4.59685 4.77595 4.85167 4.88625 4.97311 4.99420 5.04839 5.09510 5.20559 5.24979 5.27039 5.33823 5.43473 5.45632 5.46107 5.50677 5.55893 5.69027 5.75571 5.81619 5.85029 5.87384 5.93213 6.01494 6.08345 6.25848 6.30917 6.35249 6.45762 6.58199 6.78075 6.81974 7.10343 7.46845 7.67560 8.18743 8.39545 9.50462 10.08819 10.42989 11.43276 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.032213 B = 0.001749 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.017360 B =16003.739301 C =16095.033406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.712 5.712 10 C 0.166 3.834 11 C -0.142 4.142 12 C -0.127 4.127 13 C 0.131 3.869 14 N -0.727 5.727 15 C 0.508 3.492 16 O -0.545 6.545 17 C -0.144 4.144 18 C -0.097 4.097 19 C -0.124 4.124 20 H 0.081 0.919 21 C -0.118 4.118 22 C -0.157 4.157 23 C 0.059 3.941 24 O -0.384 6.384 25 C 0.062 3.938 26 C -0.161 4.161 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.400 0.600 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.092 0.908 45 H 0.049 0.951 46 H 0.051 0.949 47 H 0.095 0.905 48 H 0.077 0.923 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.653 -27.972 11.275 30.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.053 3.947 11 C -0.182 4.182 12 C -0.146 4.146 13 C 0.008 3.992 14 N -0.378 5.378 15 C 0.294 3.706 16 O -0.422 6.422 17 C -0.184 4.184 18 C -0.135 4.135 19 C -0.143 4.143 20 H 0.099 0.901 21 C -0.156 4.156 22 C -0.194 4.194 23 C -0.018 4.018 24 O -0.303 6.303 25 C -0.014 4.014 26 C -0.202 4.202 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.234 0.766 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.110 0.890 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.113 0.887 48 H 0.096 0.904 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.088 -27.872 11.118 30.285 hybrid contribution 0.284 1.038 0.092 1.080 sum 4.372 -26.834 11.210 29.408 Atomic orbital electron populations 1.69654 1.05141 1.25869 1.57335 1.24773 0.95528 0.97799 1.02798 0.86258 0.78526 0.83489 0.77839 1.21233 1.21675 1.21255 1.19263 0.91043 0.84270 1.43113 0.91145 1.42403 1.05759 0.99873 1.86991 1.21550 0.95302 0.85049 0.92754 1.23444 1.01024 0.97036 0.96714 1.22635 0.98371 0.94418 0.99198 1.21425 0.95419 0.92013 0.90344 1.46102 1.13832 1.36340 1.41494 1.20693 0.87379 0.80575 0.81960 1.90707 1.15954 1.69423 1.66159 1.21759 0.99938 0.98391 0.98313 1.21317 0.97491 0.96673 0.97975 1.21850 0.96735 0.97290 0.98382 0.90071 1.21632 0.97636 0.97855 0.98452 1.22200 0.98696 0.99512 0.99032 1.22585 0.91778 0.91422 0.96002 1.87959 1.34869 1.51369 1.56072 1.22768 0.96079 0.92257 0.90337 1.23970 1.01293 0.95001 0.99947 0.93394 0.78066 0.90696 0.92009 0.90130 0.89425 0.91882 0.91314 0.76600 0.88713 0.88952 0.91009 0.90649 0.91192 0.91650 0.91001 0.90877 0.89001 0.93252 0.93047 0.88689 0.90405 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.16 13.06 55.49 0.72 -27.43 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.25 -6.79 9.97 -15.06 -0.15 -6.94 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.71 -17.75 5.41 -52.55 -0.28 -18.03 16 10 C 0.17 3.18 4.48 -67.03 -0.30 2.88 16 11 C -0.14 -2.25 7.40 -25.92 -0.19 -2.44 16 12 C -0.13 -1.66 3.75 -89.80 -0.34 -2.00 16 13 C 0.13 1.70 5.50 -4.04 -0.02 1.68 16 14 N -0.73 -7.79 5.56 -60.30 -0.33 -8.12 16 15 C 0.51 5.90 7.83 -10.99 -0.09 5.82 16 16 O -0.54 -8.68 15.98 5.56 0.09 -8.59 16 17 C -0.14 -1.08 5.46 -27.88 -0.15 -1.23 16 18 C -0.10 -0.76 3.98 -26.73 -0.11 -0.87 16 19 C -0.12 -0.83 2.38 -90.48 -0.22 -1.04 16 20 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 21 C -0.12 -0.75 5.31 -26.55 -0.14 -0.89 16 22 C -0.16 -0.89 6.14 -26.59 -0.16 -1.05 16 23 C 0.06 0.37 6.84 37.21 0.25 0.62 16 24 O -0.38 -3.27 10.77 -35.23 -0.38 -3.65 16 25 C 0.06 0.43 5.84 37.21 0.22 0.64 16 26 C -0.16 -2.62 7.45 -25.83 -0.19 -2.81 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.39 10.24 7.92 -40.82 -0.32 9.92 16 29 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.03 7.87 -51.93 -0.41 0.63 16 35 H 0.40 3.23 8.47 -40.82 -0.35 2.88 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.51 6.63 -51.93 -0.34 0.16 16 38 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 39 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.10 0.55 6.69 -51.93 -0.35 0.21 16 48 H 0.08 1.41 7.92 -51.93 -0.41 1.00 16 49 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 389.33 15.07 5.87 5.87 Total: -1.00 -32.90 389.33 -9.93 -42.83 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -8.90 Total: 7.97 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -1.68 Total: -8.10 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.11 Total: -53.59 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.29 Total: -12.23 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.90 -9.93 -42.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100806930.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.118 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds