Wall clock time and date at job start Fri Apr 10 2020 22:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99830 * 2 1 4 4 H 1.48499 * 109.47273 * 239.99654 * 3 2 1 5 5 H 1.48496 * 109.47243 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47183 * 119.99995 * 3 2 1 7 7 C 1.38807 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99884 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99949 * 179.97438 * 9 7 2 11 11 C 1.53783 * 113.61046 * 204.99833 * 10 9 7 12 12 C 1.53783 * 87.07912 * 219.93516 * 11 10 9 13 13 C 1.53000 * 113.61057 * 139.98267 * 12 11 10 14 14 N 1.46504 * 109.46987 * 176.52985 * 13 12 11 15 15 C 1.34773 * 120.00136 * 179.97438 * 14 13 12 16 16 O 1.21277 * 120.00015 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00020 * 180.02562 * 15 14 13 18 18 C 1.53005 * 109.47178 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.46965 * 179.97438 * 18 17 15 20 20 H 1.09002 * 109.52286 * 54.99930 * 19 18 17 21 21 C 1.53177 * 109.51896 * 175.12608 * 19 18 17 22 22 C 1.53181 * 109.03787 * 176.94962 * 21 19 18 23 23 C 1.53093 * 109.16218 * 303.01964 * 22 21 19 24 24 O 1.42905 * 109.41329 * 57.60476 * 23 22 21 25 25 C 1.43030 * 114.13728 * 298.83738 * 24 23 22 26 26 C 1.53786 * 87.17192 * 25.39124 * 12 11 10 27 27 H 0.97005 * 119.99775 * 0.02562 * 1 2 3 28 28 H 0.96998 * 119.99808 * 359.97438 * 9 7 2 29 29 H 1.08997 * 112.85213 * 336.19653 * 10 9 7 30 30 H 1.09003 * 113.61113 * 105.39089 * 11 10 9 31 31 H 1.09000 * 113.61839 * 334.48476 * 11 10 9 32 32 H 1.08999 * 113.61718 * 270.80108 * 12 11 10 33 33 H 1.08992 * 109.47284 * 56.53404 * 13 12 11 34 34 H 1.08999 * 109.47119 * 296.52764 * 13 12 11 35 35 H 0.97005 * 119.99961 * 0.02562 * 14 13 12 36 36 H 1.09002 * 109.47519 * 60.00027 * 17 15 14 37 37 H 1.09004 * 109.47346 * 299.99559 * 17 15 14 38 38 H 1.09002 * 109.46983 * 59.99565 * 18 17 15 39 39 H 1.08999 * 109.46872 * 299.99619 * 18 17 15 40 40 H 1.09001 * 109.54414 * 296.81428 * 21 19 18 41 41 H 1.08998 * 109.54571 * 56.99363 * 21 19 18 42 42 H 1.09005 * 109.52357 * 62.91938 * 22 21 19 43 43 H 1.08991 * 109.52488 * 183.11066 * 22 21 19 44 44 H 1.09000 * 109.48150 * 177.58678 * 23 22 21 45 45 H 1.09002 * 109.47828 * 297.62549 * 23 22 21 46 46 H 1.08999 * 109.46933 * 301.19433 * 25 24 23 47 47 H 1.09000 * 109.57180 * 181.11227 * 25 24 23 48 48 H 1.08998 * 113.60976 * 89.15835 * 26 12 11 49 49 H 1.09003 * 113.61202 * 220.05607 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.2601 -4.8287 -0.5949 12 6 1.8497 -5.6981 0.5283 13 6 0.8478 -6.6867 1.1281 14 7 1.5224 -7.5207 2.1259 15 6 0.8320 -8.4690 2.7895 16 8 -0.3477 -8.6322 2.5604 17 6 1.5258 -9.3265 3.8162 18 6 0.5240 -10.3153 4.4160 19 6 1.2286 -11.1863 5.4580 20 1 1.7079 -10.5492 6.2013 21 6 0.2028 -12.0926 6.1455 22 6 0.9300 -13.0126 7.1311 23 6 1.9985 -13.8104 6.3790 24 8 2.9016 -12.9077 5.7374 25 6 2.2857 -12.0536 4.7694 26 6 2.0030 -4.4042 1.3453 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 3.0656 -3.5638 -0.4048 30 1 1.5908 -5.1202 -1.5919 31 1 0.1798 -4.7009 -0.5267 32 1 2.7996 -6.1644 0.2666 33 1 0.4448 -7.3199 0.3379 34 1 0.0353 -6.1371 1.6034 35 1 2.4659 -7.3900 2.3094 36 1 1.9290 -8.6930 4.6063 37 1 2.3383 -9.8764 3.3412 38 1 0.1212 -10.9488 3.6257 39 1 -0.2888 -9.7658 4.8910 40 1 -0.5212 -11.4810 6.6840 41 1 -0.3129 -12.6935 5.3965 42 1 1.4034 -12.4124 7.9082 43 1 0.2149 -13.6987 7.5845 44 1 2.5481 -14.4354 7.0828 45 1 1.5206 -14.4408 5.6290 46 1 1.8116 -12.6610 3.9984 47 1 3.0412 -11.4131 4.3143 48 1 1.1262 -4.1601 1.9450 49 1 2.9325 -4.3536 1.9125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100806930.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:10 Heat of formation + Delta-G solvation = -103.981047 kcal Electronic energy + Delta-G solvation = -24930.821145 eV Core-core repulsion = 21277.569741 eV Total energy + Delta-G solvation = -3653.251404 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.01087 -40.30248 -39.70782 -36.21853 -35.88614 -34.97502 -33.64647 -32.22257 -30.85244 -28.58794 -26.45693 -26.15180 -25.95542 -25.33642 -22.80683 -22.27277 -21.28965 -20.99863 -20.39920 -19.04523 -18.07362 -17.34093 -17.20861 -16.93091 -16.58654 -16.53903 -16.10806 -15.73526 -15.53475 -15.25217 -15.07079 -14.88777 -14.58074 -14.36931 -13.94452 -13.54363 -13.40372 -13.24172 -13.21168 -12.99696 -12.90623 -12.73349 -12.61077 -12.24942 -12.23582 -12.07955 -12.06318 -11.72104 -11.58694 -11.54744 -11.45647 -11.14626 -11.09627 -10.84172 -10.72042 -10.35957 -10.03267 -8.97539 -7.94238 -5.22770 1.47428 1.50506 1.56636 1.69230 2.26258 2.57171 2.98590 3.37444 3.66785 3.71764 3.76676 3.77246 3.82841 3.92506 4.00123 4.04410 4.25917 4.27738 4.31456 4.34481 4.37941 4.44120 4.54683 4.56658 4.60571 4.67407 4.76706 4.79914 4.86086 4.92650 4.95367 4.98174 4.99610 5.06357 5.09726 5.16763 5.22930 5.24460 5.28469 5.38297 5.44773 5.48276 5.54571 5.74279 6.27777 6.28853 6.62761 7.32287 7.33207 8.11823 8.33459 9.29029 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.032213 B = 0.001749 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.017360 B =16003.739301 C =16095.033406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.975 3.025 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.080 0.920 9 N -0.730 5.730 10 C 0.142 3.858 11 C -0.138 4.138 12 C -0.094 4.094 13 C 0.137 3.863 14 N -0.716 5.716 15 C 0.503 3.497 16 O -0.594 6.594 17 C -0.135 4.135 18 C -0.091 4.091 19 C -0.115 4.115 20 H 0.082 0.918 21 C -0.122 4.122 22 C -0.153 4.153 23 C 0.053 3.947 24 O -0.404 6.404 25 C 0.060 3.940 26 C -0.153 4.153 27 H 0.250 0.750 28 H 0.371 0.629 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.123 0.877 33 H 0.062 0.938 34 H 0.041 0.959 35 H 0.417 0.583 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.103 0.897 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.108 0.892 48 H 0.053 0.947 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.192 -29.504 11.751 32.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.803 3.197 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.098 0.902 9 N -0.368 5.368 10 C 0.033 3.967 11 C -0.178 4.178 12 C -0.113 4.113 13 C 0.013 3.987 14 N -0.368 5.368 15 C 0.291 3.709 16 O -0.475 6.475 17 C -0.174 4.174 18 C -0.129 4.129 19 C -0.134 4.134 20 H 0.101 0.899 21 C -0.160 4.160 22 C -0.190 4.190 23 C -0.023 4.023 24 O -0.323 6.323 25 C -0.017 4.017 26 C -0.193 4.193 27 H 0.059 0.941 28 H 0.203 0.797 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.141 0.859 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.254 0.746 36 H 0.133 0.867 37 H 0.139 0.861 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.121 0.879 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.126 0.874 48 H 0.072 0.928 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.710 -29.455 11.604 32.362 hybrid contribution -0.497 1.421 -0.057 1.507 sum 6.213 -28.034 11.547 30.949 Atomic orbital electron populations 1.69826 1.06742 1.26063 1.59673 1.25612 0.96373 1.01301 1.03908 0.85193 0.77139 0.79080 0.78244 1.20225 1.22464 1.20346 1.19717 0.91641 0.85398 1.40865 0.90229 1.42630 1.05324 1.01264 1.87541 1.22007 0.95641 0.83833 0.95261 1.23331 0.99820 0.96039 0.98568 1.22462 0.99448 0.92955 0.96402 1.21174 0.94861 0.91989 0.90685 1.45980 1.14577 1.35574 1.40683 1.21442 0.86879 0.80489 0.82054 1.90692 1.18278 1.70813 1.67731 1.21795 0.99967 0.98011 0.97668 1.21227 0.97293 0.96599 0.97820 1.21755 0.96647 0.97077 0.97904 0.89942 1.21665 0.97667 0.97990 0.98633 1.22174 0.98735 0.99491 0.98648 1.22740 0.91862 0.91375 0.96355 1.87930 1.35982 1.51874 1.56519 1.22856 0.96339 0.92332 0.90130 1.23737 1.01009 0.96119 0.98475 0.94141 0.79727 0.90044 0.90312 0.91717 0.85901 0.91947 0.94022 0.74603 0.86686 0.86075 0.92178 0.92496 0.91424 0.91804 0.91353 0.89632 0.87923 0.92780 0.92959 0.87423 0.92844 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.29 13.06 21.65 0.28 -60.01 16 2 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 3 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 7 C -0.24 -13.52 9.97 84.03 0.84 -12.68 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.73 -36.82 5.41 -320.17 -1.73 -38.55 16 10 C 0.14 5.31 4.48 45.58 0.20 5.51 16 11 C -0.14 -4.19 7.40 31.12 0.23 -3.96 16 12 C -0.09 -2.21 3.75 -10.26 -0.04 -2.25 16 13 C 0.14 3.37 5.50 86.38 0.47 3.84 16 14 N -0.72 -13.67 5.56 -463.07 -2.57 -16.25 16 15 C 0.50 10.97 7.83 87.66 0.69 11.65 16 16 O -0.59 -18.97 15.98 -3.02 -0.05 -19.02 16 17 C -0.14 -1.69 5.46 29.85 0.16 -1.53 16 18 C -0.09 -1.35 3.98 30.60 0.12 -1.23 16 19 C -0.12 -1.36 2.38 -10.70 -0.03 -1.39 16 20 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 21 C -0.12 -1.42 5.31 30.71 0.16 -1.26 16 22 C -0.15 -1.51 6.14 30.69 0.19 -1.33 16 23 C 0.05 0.57 6.84 72.01 0.49 1.07 16 24 O -0.40 -6.15 10.77 -148.98 -1.60 -7.76 16 25 C 0.06 0.70 5.84 72.01 0.42 1.12 16 26 C -0.15 -4.75 7.45 31.18 0.23 -4.52 16 27 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 28 H 0.37 20.42 7.92 -92.71 -0.73 19.68 16 29 H 0.08 2.93 8.10 -2.39 -0.02 2.91 16 30 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.06 2.18 8.08 -2.39 -0.02 2.17 16 32 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.04 1.27 7.87 -2.39 -0.02 1.25 16 35 H 0.42 5.16 8.47 -92.70 -0.79 4.38 16 36 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.12 0.87 6.63 -2.39 -0.02 0.85 16 38 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 39 H 0.06 1.05 8.10 -2.39 -0.02 1.04 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.05 0.52 8.14 -2.39 -0.02 0.51 16 46 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.11 0.93 6.69 -2.39 -0.02 0.92 16 48 H 0.05 1.94 7.92 -2.39 -0.02 1.92 16 49 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -73.13 389.33 0.38 -72.75 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: -0.59 Total: 31.79 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 4.62 Total: -11.09 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -4.02 Total: -114.80 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -1.65 Total: -26.78 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -73.13 0.38 -72.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100806930.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.230 kcal (2) G-P(sol) polarization free energy of solvation -73.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds