Wall clock time and date at job start Fri Apr 10 2020 22:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.88592 * 2 1 4 4 C 1.54909 * 111.00925 * 236.11624 * 2 1 3 5 5 N 1.47525 * 104.78593 * 204.90369 * 4 2 1 6 6 C 1.36935 * 125.63531 * 204.08466 * 5 4 2 7 7 H 1.08002 * 119.99865 * 169.98799 * 6 5 4 8 8 C 1.38810 * 120.00104 * 349.98953 * 6 5 4 9 9 N 1.31618 * 120.00103 * 350.42009 * 8 6 5 10 10 Si 1.86801 * 120.00009 * 170.41366 * 8 6 5 11 11 H 1.48494 * 109.47069 * 94.13967 * 10 8 6 12 12 H 1.48497 * 109.46932 * 214.14596 * 10 8 6 13 13 H 1.48505 * 109.47073 * 334.14168 * 10 8 6 14 14 C 1.47026 * 108.71351 * 24.11494 * 5 4 2 15 15 C 1.54316 * 107.27333 * 358.94684 * 14 5 4 16 16 H 1.08998 * 110.72497 * 96.16963 * 15 14 5 17 17 C 1.53003 * 110.72105 * 219.44269 * 15 14 5 18 18 N 1.46496 * 109.47036 * 288.51892 * 17 15 14 19 19 C 1.34779 * 120.00044 * 179.97438 * 18 17 15 20 20 O 1.21605 * 120.00040 * 0.02562 * 19 18 17 21 21 C 1.47296 * 120.00205 * 180.02562 * 19 18 17 22 22 F 1.35098 * 119.99699 * 0.02562 * 21 19 18 23 23 C 1.33112 * 120.00180 * 180.02562 * 21 19 18 24 24 C 1.51446 * 126.34026 * 359.69264 * 23 21 19 25 25 C 1.54275 * 106.85211 * 180.23794 * 24 23 21 26 26 C 1.54983 * 103.66028 * 23.48747 * 25 24 23 27 27 C 1.51843 * 126.34087 * 180.02562 * 23 21 19 28 28 H 1.08997 * 109.47736 * 299.30118 * 1 2 3 29 29 H 1.09001 * 109.47348 * 59.30189 * 1 2 3 30 30 H 1.09003 * 109.46904 * 179.30321 * 1 2 3 31 31 H 1.09003 * 110.36321 * 323.71751 * 4 2 1 32 32 H 1.08999 * 110.36895 * 86.03287 * 4 2 1 33 33 H 0.96996 * 120.00024 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.88347 * 239.52597 * 14 5 4 35 35 H 1.08998 * 109.87880 * 118.36427 * 14 5 4 36 36 H 1.09001 * 109.47316 * 48.52347 * 17 15 14 37 37 H 1.09000 * 109.47253 * 168.52210 * 17 15 14 38 38 H 0.97000 * 120.00170 * 0.02562 * 18 17 15 39 39 H 1.09000 * 109.98370 * 299.72654 * 24 23 21 40 40 H 1.09004 * 109.98599 * 61.02828 * 24 23 21 41 41 H 1.08993 * 110.79712 * 264.85937 * 25 24 23 42 42 H 1.09000 * 110.42776 * 141.92813 * 25 24 23 43 43 H 1.09002 * 110.83415 * 204.49032 * 26 25 24 44 44 H 1.08998 * 110.83542 * 80.90667 * 26 25 24 45 45 H 1.09001 * 110.44348 * 274.92560 * 27 23 21 46 46 H 1.08997 * 110.44081 * 37.33161 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8062 -1.2005 5 7 3.4281 -1.2422 -0.7724 6 6 4.4654 -1.5654 -1.6058 7 1 5.4555 -1.7172 -1.2018 8 6 4.2445 -1.6981 -2.9698 9 7 3.0152 -1.7009 -3.4401 10 14 5.6918 -1.8724 -4.1378 11 1 5.9600 -3.3123 -4.3821 12 1 5.3730 -1.2028 -5.4243 13 1 6.8931 -1.2404 -3.5352 14 6 3.4678 -1.2729 0.6970 15 6 2.0862 -0.8074 1.2026 16 1 1.4471 -1.6629 1.4213 17 6 2.2340 0.0885 2.4341 18 7 2.6458 -0.7233 3.5819 19 6 2.8394 -0.1431 4.7829 20 8 2.6717 1.0542 4.9139 21 6 3.2540 -0.9592 5.9369 22 9 3.4407 -2.2893 5.7913 23 6 3.4446 -0.3863 7.1232 24 6 3.2839 1.0847 7.4456 25 6 3.6202 1.2540 8.9417 26 6 4.5204 0.0320 9.2551 27 6 3.8704 -1.0854 8.4021 28 1 -0.3634 0.5029 0.8961 29 1 -0.3634 0.5246 -0.8837 30 1 -0.3633 -1.0276 -0.0125 31 1 1.4523 -1.6703 -1.4025 32 1 2.1554 -0.1715 -2.0839 33 1 2.8609 -1.7932 -4.3933 34 1 4.2425 -0.5980 1.0611 35 1 3.6659 -2.2880 1.0413 36 1 2.9875 0.8518 2.2398 37 1 1.2794 0.5675 2.6517 38 1 2.7799 -1.6783 3.4774 39 1 3.9691 1.6762 6.8383 40 1 2.2562 1.3968 7.2593 41 1 2.7143 1.2277 9.5473 42 1 4.1653 2.1834 9.1063 43 1 4.4807 -0.2170 10.3155 44 1 5.5467 0.2148 8.9368 45 1 3.0034 -1.5006 8.9158 46 1 4.5945 -1.8703 8.1839 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101875782.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:14 Heat of formation + Delta-G solvation = -64.667284 kcal Electronic energy + Delta-G solvation = -25755.448444 eV Core-core repulsion = 21980.441507 eV Total energy + Delta-G solvation = -3775.006937 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.180 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.99345 -39.89712 -38.39856 -37.77290 -34.72942 -32.94961 -31.59543 -30.75180 -29.45561 -29.14241 -26.37072 -25.69095 -24.75745 -22.87664 -21.42541 -21.05267 -19.94408 -19.65876 -18.92491 -17.83433 -16.73723 -16.65319 -16.41639 -15.63764 -15.52823 -15.26574 -14.72026 -14.47524 -14.07990 -13.78139 -13.65638 -13.59209 -13.14789 -12.85097 -12.70055 -12.63939 -12.47031 -11.88966 -11.79972 -11.59964 -11.54782 -11.48041 -11.43727 -11.17125 -10.95747 -10.82862 -10.78783 -10.27612 -10.06504 -10.02390 -9.91833 -9.74663 -9.51996 -9.25682 -8.87662 -8.58131 -6.79908 -5.74833 -3.07172 0.95955 2.95226 2.99143 3.39599 3.45483 3.47649 3.92704 4.17716 4.30831 4.49384 4.66347 4.80407 4.93846 5.06595 5.08248 5.20265 5.22044 5.27104 5.41650 5.46147 5.49788 5.56815 5.62670 5.69010 5.72697 5.77269 5.82183 5.88053 5.99405 6.03397 6.05496 6.17063 6.19447 6.24381 6.37834 6.48325 6.57250 6.63133 6.75358 6.93461 7.43261 7.51436 7.59488 7.78655 8.03012 8.26017 9.19541 9.81443 10.49124 11.38313 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.021740 B = 0.002710 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.660696 B =10328.450595 C =11026.119575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 H 0.072 0.928 4 C 0.180 3.820 5 N -0.604 5.604 6 C -0.229 4.229 7 H 0.075 0.925 8 C -0.007 4.007 9 N -0.918 5.918 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.140 3.860 15 C -0.110 4.110 16 H 0.079 0.921 17 C 0.133 3.867 18 N -0.715 5.715 19 C 0.546 3.454 20 O -0.526 6.526 21 C -0.008 4.008 22 F -0.136 7.136 23 C -0.078 4.078 24 C -0.079 4.079 25 C -0.128 4.128 26 C -0.123 4.123 27 C -0.096 4.096 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.028 0.972 32 H 0.069 0.931 33 H 0.253 0.747 34 H 0.024 0.976 35 H 0.020 0.980 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.406 0.594 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.517 3.317 23.328 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.132 4.132 3 H 0.090 0.910 4 C 0.055 3.945 5 N -0.330 5.330 6 C -0.357 4.357 7 H 0.093 0.907 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.740 3.260 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.206 1.206 14 C 0.014 3.986 15 C -0.129 4.129 16 H 0.097 0.903 17 C 0.010 3.990 18 N -0.365 5.365 19 C 0.332 3.668 20 O -0.405 6.405 21 C -0.031 4.031 22 F -0.115 7.115 23 C -0.081 4.081 24 C -0.116 4.116 25 C -0.166 4.166 26 C -0.161 4.161 27 C -0.133 4.133 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.042 0.958 35 H 0.037 0.963 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.241 0.759 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.595 4.091 23.136 23.638 hybrid contribution 0.843 -1.067 -0.841 1.599 sum -1.752 3.023 22.295 22.567 Atomic orbital electron populations 1.21656 0.95346 1.01485 1.00762 1.22588 0.94729 0.99423 0.96477 0.91007 1.21468 0.84939 0.95273 0.92780 1.44488 1.10841 1.78625 0.99022 1.19015 0.87832 1.40831 0.88061 0.90710 1.24816 0.96567 1.01846 0.97159 1.69951 1.17845 1.56082 1.12639 0.86136 0.81604 0.77599 0.80626 1.21626 1.21598 1.20607 1.21351 0.93249 0.97270 0.86698 1.22493 0.98812 0.98139 0.93471 0.90305 1.21522 1.00270 0.93660 0.83553 1.45988 1.68516 1.12848 1.09113 1.18131 0.78429 0.87444 0.82769 1.90811 1.51868 1.13709 1.84063 1.18922 1.11437 0.78083 0.94622 1.91480 1.93382 1.30384 1.96265 1.23010 0.93648 0.98548 0.92940 1.21152 1.03806 0.90858 0.95744 1.22481 0.99810 0.98509 0.95795 1.22527 0.99373 0.94550 0.99600 1.21498 1.01138 0.98194 0.92437 0.93599 0.92636 0.92828 0.95394 0.91316 0.93711 0.95817 0.96260 0.90951 0.91288 0.75907 0.89086 0.89276 0.91179 0.90905 0.90786 0.90918 0.89239 0.90170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 9.29 37.16 0.35 -1.68 16 2 C -0.11 -2.02 3.08 -88.47 -0.27 -2.29 16 3 H 0.07 1.30 8.05 -51.93 -0.42 0.88 16 4 C 0.18 4.28 4.89 -2.47 -0.01 4.27 16 5 N -0.60 -15.42 3.40 -169.99 -0.58 -16.00 16 6 C -0.23 -6.43 10.24 -15.06 -0.15 -6.59 16 7 H 0.08 2.05 7.85 -52.49 -0.41 1.63 16 8 C -0.01 -0.21 5.40 -17.43 -0.09 -0.30 16 9 N -0.92 -26.95 10.68 55.49 0.59 -26.36 16 10 Si 0.91 22.16 29.56 -169.99 -5.03 17.14 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.14 2.88 6.75 -3.07 -0.02 2.86 16 15 C -0.11 -1.82 2.43 -88.79 -0.22 -2.04 16 16 H 0.08 1.25 8.04 -51.93 -0.42 0.83 16 17 C 0.13 1.95 5.02 -4.04 -0.02 1.93 16 18 N -0.71 -9.69 5.47 -61.43 -0.34 -10.02 16 19 C 0.55 7.64 7.77 -12.58 -0.10 7.54 16 20 O -0.53 -8.36 14.12 5.27 0.07 -8.29 16 21 C -0.01 -0.10 7.42 -37.68 -0.28 -0.38 16 22 F -0.14 -1.65 16.52 2.25 0.04 -1.61 16 23 C -0.08 -0.81 6.16 -100.20 -0.62 -1.43 16 24 C -0.08 -0.76 4.81 -26.85 -0.13 -0.89 16 25 C -0.13 -0.88 6.88 -25.02 -0.17 -1.06 16 26 C -0.12 -0.79 6.94 -24.69 -0.17 -0.96 16 27 C -0.10 -0.74 6.44 -26.33 -0.17 -0.91 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 31 H 0.03 0.72 7.96 -51.93 -0.41 0.31 16 32 H 0.07 1.83 6.94 -51.93 -0.36 1.47 16 33 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.02 0.49 7.68 -51.93 -0.40 0.10 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.41 5.06 8.02 -40.82 -0.33 4.73 16 39 H 0.09 0.99 7.67 -51.93 -0.40 0.59 16 40 H 0.09 0.93 7.68 -51.93 -0.40 0.53 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 370.28 15.07 5.58 5.58 Total: -1.00 -31.09 370.28 -9.48 -40.56 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.74 Total: 0.93 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -2.08 Total: -1.92 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -0.32 Total: -52.38 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.07 Total: -8.29 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.09 -9.48 -40.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101875782.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.103 kcal (2) G-P(sol) polarization free energy of solvation -31.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds