Wall clock time and date at job start Fri Apr 10 2020 22:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.78437 * 2 1 4 4 C 1.54325 * 110.72304 * 236.75391 * 2 1 3 5 5 N 1.47018 * 107.40412 * 219.52316 * 4 2 1 6 6 C 1.34777 * 125.64981 * 178.82520 * 5 4 2 7 7 O 1.21604 * 120.00018 * 180.02562 * 6 5 4 8 8 C 1.47304 * 119.99782 * 0.02978 * 6 5 4 9 9 F 1.35095 * 119.99894 * 359.97438 * 8 6 5 10 10 C 1.33110 * 119.99664 * 179.97438 * 8 6 5 11 11 C 1.51446 * 126.34522 * 359.68105 * 10 8 6 12 12 C 1.54275 * 106.85232 * 180.24377 * 11 10 8 13 13 C 1.54983 * 103.66232 * 23.48548 * 12 11 10 14 14 C 1.51852 * 126.33927 * 180.02562 * 10 8 6 15 15 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 16 16 C 1.54914 * 104.82992 * 24.12623 * 15 5 4 17 17 H 1.09000 * 111.00339 * 81.07133 * 16 15 5 18 18 C 1.53000 * 111.00205 * 204.91932 * 16 15 5 19 19 N 1.46510 * 109.47051 * 293.54711 * 18 16 15 20 20 C 1.36939 * 119.99669 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00079 * 359.97438 * 20 19 18 22 22 C 1.38809 * 119.99403 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00613 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99688 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47248 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47047 * 119.99843 * 24 22 20 27 27 H 1.48495 * 109.47130 * 239.99773 * 24 22 20 28 28 H 1.08999 * 109.47083 * 181.78943 * 1 2 3 29 29 H 1.09002 * 109.47293 * 301.78952 * 1 2 3 30 30 H 1.09000 * 109.47062 * 61.79046 * 1 2 3 31 31 H 1.09002 * 109.88192 * 100.02756 * 4 2 1 32 32 H 1.09000 * 109.88128 * 339.01609 * 4 2 1 33 33 H 1.09002 * 109.98680 * 299.73433 * 11 10 8 34 34 H 1.09004 * 109.98181 * 61.03387 * 11 10 8 35 35 H 1.09000 * 110.79759 * 264.85889 * 12 11 10 36 36 H 1.09002 * 110.43092 * 141.93359 * 12 11 10 37 37 H 1.08995 * 110.83398 * 204.48465 * 13 12 11 38 38 H 1.09005 * 110.83205 * 80.90999 * 13 12 11 39 39 H 1.09001 * 110.43519 * 274.92244 * 14 10 8 40 40 H 1.09000 * 110.43733 * 37.44529 * 14 10 8 41 41 H 1.08999 * 110.36956 * 142.96999 * 15 5 4 42 42 H 1.09003 * 110.36599 * 265.28903 * 15 5 4 43 43 H 1.08997 * 109.47218 * 53.54461 * 18 16 15 44 44 H 1.08997 * 109.47242 * 173.54932 * 18 16 15 45 45 H 0.96996 * 119.99817 * 0.02562 * 19 18 16 46 46 H 0.96999 * 120.00588 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2438 -1.5535 -0.7414 6 6 3.9877 -2.3885 -1.4937 7 8 4.9355 -2.9695 -1.0008 8 6 3.6528 -2.5972 -2.9128 9 9 2.5996 -1.9520 -3.4602 10 6 4.3879 -3.4214 -3.6559 11 6 5.5968 -4.2085 -3.1947 12 6 6.1027 -5.0067 -4.4141 13 6 5.5643 -4.2041 -5.6258 14 6 4.1741 -3.7410 -5.1249 15 6 3.4656 -1.2541 0.6849 16 6 2.0831 -0.7972 1.2139 17 1 1.4480 -1.6542 1.4382 18 6 2.2359 0.1051 2.4400 19 7 2.7860 -0.6726 3.5532 20 6 3.0107 -0.0718 4.7630 21 1 2.7829 0.9755 4.8964 22 6 3.5324 -0.8085 5.8174 23 7 3.8105 -2.0846 5.6547 24 14 3.8397 0.0112 7.4676 25 1 3.4471 1.4413 7.3907 26 1 3.0352 -0.6678 8.5151 27 1 5.2815 -0.0881 7.8088 28 1 -0.3633 -1.0272 0.0321 29 1 -0.3634 0.5414 0.8735 30 1 -0.3633 0.4858 -0.9056 31 1 2.3741 -0.1026 -1.9977 32 1 1.3121 -1.4741 -1.5791 33 1 6.3728 -3.5281 -2.8441 34 1 5.3126 -4.8934 -2.3956 35 1 5.6939 -6.0171 -4.4120 36 1 7.1923 -5.0333 -4.4260 37 1 5.4673 -4.8443 -6.5025 38 1 6.2043 -3.3478 -5.8388 39 1 3.4429 -4.5416 -5.2377 40 1 3.8518 -2.8509 -5.6651 41 1 3.7975 -2.1479 1.2131 42 1 4.1973 -0.4537 0.7952 43 1 2.9103 0.9281 2.2037 44 1 1.2612 0.5034 2.7218 45 1 2.9909 -1.6131 3.4331 46 1 4.1747 -2.5996 6.3916 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106005197.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:18 Heat of formation + Delta-G solvation = -67.800260 kcal Electronic energy + Delta-G solvation = -26026.803695 eV Core-core repulsion = 22251.660903 eV Total energy + Delta-G solvation = -3775.142793 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.180 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.00455 -40.08657 -38.64691 -37.50384 -34.65848 -32.89122 -31.56397 -31.34787 -29.23519 -29.07685 -26.74301 -26.04446 -24.74002 -23.08938 -21.37748 -21.10747 -20.45813 -19.91050 -18.75319 -17.53594 -16.96312 -16.59159 -16.44653 -15.81709 -15.46639 -15.19447 -14.58544 -14.44683 -14.11989 -13.79204 -13.61835 -13.53266 -13.17670 -13.03792 -12.96931 -12.72517 -12.49070 -12.24919 -12.05673 -11.94993 -11.75512 -11.44762 -11.40371 -11.25456 -11.07609 -10.91134 -10.86581 -10.58364 -10.44260 -10.34678 -9.97572 -9.84059 -9.65335 -9.12745 -8.87262 -8.49991 -6.91604 -5.74615 -3.04045 1.00683 2.85515 3.02845 3.44827 3.50087 3.52630 3.95478 4.01709 4.33592 4.53561 4.58537 4.69504 4.75662 4.85002 4.91501 4.98898 5.12742 5.25069 5.33056 5.43028 5.49017 5.51065 5.53784 5.54825 5.60110 5.66162 5.72275 5.75793 5.81852 5.85666 5.92383 6.00245 6.03375 6.06148 6.11716 6.19007 6.22531 6.31950 6.39615 6.50216 6.70548 6.83954 7.50030 7.71653 8.03485 8.43459 9.54854 10.11700 10.46129 11.48088 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.018778 B = 0.003001 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.734034 B = 9327.273014 C =10625.910288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 H 0.087 0.913 4 C 0.105 3.895 5 N -0.610 5.610 6 C 0.559 3.441 7 O -0.519 6.519 8 C -0.004 4.004 9 F -0.136 7.136 10 C -0.079 4.079 11 C -0.080 4.080 12 C -0.128 4.128 13 C -0.123 4.123 14 C -0.094 4.094 15 C 0.117 3.883 16 C -0.101 4.101 17 H 0.085 0.915 18 C 0.166 3.834 19 N -0.733 5.733 20 C -0.240 4.240 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.931 5.931 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.021 0.979 44 H 0.025 0.975 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.184 -1.703 -24.751 24.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.119 4.119 3 H 0.106 0.894 4 C -0.018 4.018 5 N -0.342 5.342 6 C 0.347 3.653 7 O -0.397 6.397 8 C -0.026 4.026 9 F -0.115 7.115 10 C -0.082 4.082 11 C -0.117 4.117 12 C -0.166 4.166 13 C -0.160 4.160 14 C -0.131 4.131 15 C -0.005 4.005 16 C -0.120 4.120 17 H 0.104 0.896 18 C 0.038 3.962 19 N -0.378 5.378 20 C -0.371 4.371 21 H 0.089 0.911 22 C -0.210 4.210 23 N -0.580 5.580 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.039 0.961 44 H 0.043 0.957 45 H 0.218 0.782 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.661 -1.898 -24.401 24.531 hybrid contribution -0.069 0.304 0.815 0.873 sum -1.730 -1.595 -23.586 23.703 Atomic orbital electron populations 1.21727 0.93679 1.02217 1.02018 1.22301 0.96431 0.99540 0.93617 0.89444 1.22297 0.87591 0.94776 0.97176 1.48448 1.29970 1.43463 1.12354 1.17783 0.82904 0.79707 0.84912 1.90849 1.28237 1.48381 1.72255 1.18848 0.90480 1.01134 0.92119 1.91455 1.54538 1.80060 1.85449 1.22995 0.95583 0.93363 0.96293 1.21163 0.94335 0.98204 0.97996 1.22479 1.01032 0.98947 0.94103 1.22524 0.95366 1.00101 0.98034 1.21486 0.98744 1.02038 0.90842 1.22385 0.97777 1.01911 0.78385 1.22717 0.95257 0.99252 0.94814 0.89635 1.20577 0.96621 0.92902 0.86084 1.42378 1.76765 1.10427 1.08187 1.19249 1.35250 0.94347 0.88291 0.91113 1.24752 1.02003 0.95867 0.98334 1.69668 1.50097 1.06542 1.31668 0.86125 0.77507 0.78334 0.84259 1.20573 1.21885 1.21870 0.92443 0.91621 0.92619 0.91291 0.91005 0.89091 0.89142 0.91131 0.90881 0.90798 0.90984 0.89241 0.90297 0.89577 0.90763 0.96073 0.95712 0.78212 0.93526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.14 37.15 0.34 -1.12 16 2 C -0.10 -1.22 3.03 -88.65 -0.27 -1.49 16 3 H 0.09 1.03 8.04 -51.93 -0.42 0.62 16 4 C 0.10 1.29 5.07 -3.07 -0.02 1.27 16 5 N -0.61 -9.31 3.33 -171.83 -0.57 -9.88 16 6 C 0.56 8.86 7.80 -12.57 -0.10 8.76 16 7 O -0.52 -9.56 14.37 5.27 0.08 -9.49 16 8 C 0.00 -0.05 7.31 -37.68 -0.28 -0.32 16 9 F -0.14 -1.65 14.16 2.25 0.03 -1.62 16 10 C -0.08 -0.88 6.16 -100.20 -0.62 -1.50 16 11 C -0.08 -0.87 4.81 -26.85 -0.13 -1.00 16 12 C -0.13 -0.99 6.88 -25.02 -0.17 -1.16 16 13 C -0.12 -0.83 6.94 -24.70 -0.17 -1.00 16 14 C -0.09 -0.76 6.44 -26.33 -0.17 -0.93 16 15 C 0.12 2.00 6.08 -2.53 -0.02 1.98 16 16 C -0.10 -1.61 2.56 -88.33 -0.23 -1.84 16 17 H 0.09 1.43 8.04 -51.93 -0.42 1.01 16 18 C 0.17 3.24 5.72 -4.04 -0.02 3.22 16 19 N -0.73 -18.48 5.45 -59.90 -0.33 -18.81 16 20 C -0.24 -6.73 9.99 -15.06 -0.15 -6.89 16 21 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 23 N -0.93 -28.51 13.06 55.49 0.72 -27.78 16 24 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.78 7.69 -51.93 -0.40 0.38 16 32 H 0.07 0.84 7.24 -51.93 -0.38 0.46 16 33 H 0.09 1.09 7.67 -51.93 -0.40 0.70 16 34 H 0.09 1.10 7.68 -51.93 -0.40 0.70 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 1.69 8.04 -51.93 -0.42 1.27 16 42 H 0.07 1.32 8.00 -51.93 -0.42 0.91 16 43 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.38 10.27 7.53 -40.82 -0.31 9.96 16 46 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 370.27 15.07 5.58 5.58 Total: -1.00 -31.85 370.27 -9.34 -41.19 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -7.74 Total: 5.74 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -2.09 Total: -2.50 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.17 Total: -56.47 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.08 Total: -9.49 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.03 Total: -1.62 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.85 -9.34 -41.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106005197.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.606 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds