Wall clock time and date at job start Fri Apr 10 2020 22:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.78437 * 2 1 4 4 C 1.54325 * 110.72304 * 236.75391 * 2 1 3 5 5 N 1.47018 * 107.40412 * 219.52316 * 4 2 1 6 6 C 1.34777 * 125.64981 * 178.82520 * 5 4 2 7 7 O 1.21604 * 120.00018 * 180.02562 * 6 5 4 8 8 C 1.47304 * 119.99782 * 0.02978 * 6 5 4 9 9 F 1.35095 * 119.99894 * 359.97438 * 8 6 5 10 10 C 1.33110 * 119.99664 * 179.97438 * 8 6 5 11 11 C 1.51446 * 126.34522 * 359.68105 * 10 8 6 12 12 C 1.54275 * 106.85232 * 180.24377 * 11 10 8 13 13 C 1.54983 * 103.66232 * 23.48548 * 12 11 10 14 14 C 1.51852 * 126.33927 * 180.02562 * 10 8 6 15 15 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 16 16 C 1.54914 * 104.82992 * 24.12623 * 15 5 4 17 17 H 1.09000 * 111.00339 * 81.07133 * 16 15 5 18 18 C 1.53000 * 111.00205 * 204.91932 * 16 15 5 19 19 N 1.46510 * 109.47051 * 293.54711 * 18 16 15 20 20 C 1.36939 * 119.99669 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00079 * 359.97438 * 20 19 18 22 22 C 1.38809 * 119.99403 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00613 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99688 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47248 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47047 * 119.99843 * 24 22 20 27 27 H 1.48495 * 109.47130 * 239.99773 * 24 22 20 28 28 H 1.08999 * 109.47083 * 181.78943 * 1 2 3 29 29 H 1.09002 * 109.47293 * 301.78952 * 1 2 3 30 30 H 1.09000 * 109.47062 * 61.79046 * 1 2 3 31 31 H 1.09002 * 109.88192 * 100.02756 * 4 2 1 32 32 H 1.09000 * 109.88128 * 339.01609 * 4 2 1 33 33 H 1.09002 * 109.98680 * 299.73433 * 11 10 8 34 34 H 1.09004 * 109.98181 * 61.03387 * 11 10 8 35 35 H 1.09000 * 110.79759 * 264.85889 * 12 11 10 36 36 H 1.09002 * 110.43092 * 141.93359 * 12 11 10 37 37 H 1.08995 * 110.83398 * 204.48465 * 13 12 11 38 38 H 1.09005 * 110.83205 * 80.90999 * 13 12 11 39 39 H 1.09001 * 110.43519 * 274.92244 * 14 10 8 40 40 H 1.09000 * 110.43733 * 37.44529 * 14 10 8 41 41 H 1.08999 * 110.36956 * 142.96999 * 15 5 4 42 42 H 1.09003 * 110.36599 * 265.28903 * 15 5 4 43 43 H 1.08997 * 109.47218 * 53.54461 * 18 16 15 44 44 H 1.08997 * 109.47242 * 173.54932 * 18 16 15 45 45 H 0.96996 * 119.99817 * 0.02562 * 19 18 16 46 46 H 0.96999 * 120.00588 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2438 -1.5535 -0.7414 6 6 3.9877 -2.3885 -1.4937 7 8 4.9355 -2.9695 -1.0008 8 6 3.6528 -2.5972 -2.9128 9 9 2.5996 -1.9520 -3.4602 10 6 4.3879 -3.4214 -3.6559 11 6 5.5968 -4.2085 -3.1947 12 6 6.1027 -5.0067 -4.4141 13 6 5.5643 -4.2041 -5.6258 14 6 4.1741 -3.7410 -5.1249 15 6 3.4656 -1.2541 0.6849 16 6 2.0831 -0.7972 1.2139 17 1 1.4480 -1.6542 1.4382 18 6 2.2359 0.1051 2.4400 19 7 2.7860 -0.6726 3.5532 20 6 3.0107 -0.0718 4.7630 21 1 2.7829 0.9755 4.8964 22 6 3.5324 -0.8085 5.8174 23 7 3.8105 -2.0846 5.6547 24 14 3.8397 0.0112 7.4676 25 1 3.4471 1.4413 7.3907 26 1 3.0352 -0.6678 8.5151 27 1 5.2815 -0.0881 7.8088 28 1 -0.3633 -1.0272 0.0321 29 1 -0.3634 0.5414 0.8735 30 1 -0.3633 0.4858 -0.9056 31 1 2.3741 -0.1026 -1.9977 32 1 1.3121 -1.4741 -1.5791 33 1 6.3728 -3.5281 -2.8441 34 1 5.3126 -4.8934 -2.3956 35 1 5.6939 -6.0171 -4.4120 36 1 7.1923 -5.0333 -4.4260 37 1 5.4673 -4.8443 -6.5025 38 1 6.2043 -3.3478 -5.8388 39 1 3.4429 -4.5416 -5.2377 40 1 3.8518 -2.8509 -5.6651 41 1 3.7975 -2.1479 1.2131 42 1 4.1973 -0.4537 0.7952 43 1 2.9103 0.9281 2.2037 44 1 1.2612 0.5034 2.7218 45 1 2.9909 -1.6131 3.4331 46 1 4.1747 -2.5996 6.3916 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106005197.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:18 Heat of formation + Delta-G solvation = -86.375137 kcal Electronic energy + Delta-G solvation = -26027.609162 eV Core-core repulsion = 22251.660903 eV Total energy + Delta-G solvation = -3775.948260 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.180 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.94614 -41.31150 -39.67546 -38.52534 -36.48294 -34.29490 -33.09528 -32.41272 -30.78655 -29.81630 -27.94599 -27.26969 -26.04102 -24.79910 -22.65746 -21.96495 -21.40261 -21.19854 -19.78074 -19.18814 -18.44277 -17.70578 -17.38198 -16.91465 -16.62997 -16.32498 -16.21879 -15.63337 -15.42645 -15.23261 -14.97173 -14.75392 -14.39831 -14.24514 -14.10035 -13.69952 -13.51310 -13.41221 -13.27508 -13.14063 -12.95067 -12.80706 -12.58865 -12.46039 -12.10790 -12.05449 -12.01627 -11.96873 -11.84855 -11.63369 -11.51332 -11.38329 -11.04495 -10.95678 -10.17527 -9.66642 -9.01318 -7.95408 -5.25005 -0.00168 1.46582 1.47850 1.57898 1.67989 1.84766 2.55125 2.91394 3.16529 3.37912 3.42748 3.51943 3.66273 3.74703 3.95217 4.11273 4.13707 4.18713 4.25602 4.36027 4.41434 4.47476 4.48615 4.60447 4.61027 4.76189 4.77694 4.79807 4.82111 4.86499 4.94675 5.01252 5.02765 5.05462 5.13618 5.15748 5.19950 5.23035 5.32518 5.40123 5.41157 5.47768 5.50491 6.26057 6.31199 6.80364 7.32231 8.07560 8.29822 9.28440 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.018778 B = 0.003001 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.734034 B = 9327.273014 C =10625.910288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.098 0.902 4 C 0.105 3.895 5 N -0.613 5.613 6 C 0.549 3.451 7 O -0.559 6.559 8 C -0.024 4.024 9 F -0.129 7.129 10 C -0.062 4.062 11 C -0.086 4.086 12 C -0.123 4.123 13 C -0.116 4.116 14 C -0.093 4.093 15 C 0.122 3.878 16 C -0.091 4.091 17 H 0.077 0.923 18 C 0.167 3.833 19 N -0.748 5.748 20 C -0.242 4.242 21 H 0.080 0.920 22 C -0.079 4.079 23 N -0.971 5.971 24 Si 0.975 3.025 25 H -0.263 1.263 26 H -0.293 1.293 27 H -0.296 1.296 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.049 0.951 42 H 0.063 0.937 43 H 0.026 0.974 44 H 0.036 0.964 45 H 0.372 0.628 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.333 -0.632 -27.299 27.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.117 0.883 4 C -0.017 4.017 5 N -0.344 5.344 6 C 0.340 3.660 7 O -0.440 6.440 8 C -0.046 4.046 9 F -0.108 7.108 10 C -0.065 4.065 11 C -0.123 4.123 12 C -0.160 4.160 13 C -0.154 4.154 14 C -0.130 4.130 15 C -0.001 4.001 16 C -0.111 4.111 17 H 0.095 0.905 18 C 0.040 3.960 19 N -0.391 5.391 20 C -0.374 4.374 21 H 0.098 0.902 22 C -0.271 4.271 23 N -0.622 5.622 24 Si 0.804 3.196 25 H -0.187 1.187 26 H -0.220 1.220 27 H -0.223 1.223 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.117 0.883 38 H 0.092 0.908 39 H 0.124 0.876 40 H 0.108 0.892 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.044 0.956 44 H 0.054 0.946 45 H 0.203 0.797 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.856 -0.771 -26.992 27.154 hybrid contribution 0.313 -0.039 1.541 1.573 sum -2.543 -0.810 -25.451 25.591 Atomic orbital electron populations 1.21722 0.91759 1.02493 1.03289 1.22302 0.97885 0.99313 0.91107 0.88328 1.22491 0.86676 0.95007 0.97488 1.48535 1.30796 1.43716 1.11387 1.18359 0.82379 0.79108 0.86201 1.90821 1.29939 1.49881 1.73355 1.18426 0.92116 1.03308 0.90749 1.91460 1.54203 1.80138 1.85002 1.23432 0.94116 0.90970 0.98004 1.21215 0.94027 0.97949 0.99146 1.22482 1.01628 0.99078 0.92835 1.22548 0.94237 1.00387 0.98186 1.21646 1.00094 1.03061 0.88151 1.22118 0.98291 0.99827 0.79816 1.22539 0.94572 0.98969 0.95002 0.90508 1.20726 0.96493 0.93014 0.85751 1.42629 1.77046 1.10305 1.09073 1.19691 1.33711 0.94731 0.89246 0.90230 1.25615 1.02827 0.96526 1.02134 1.69840 1.51813 1.08120 1.32474 0.85051 0.76763 0.78166 0.79651 1.18698 1.22018 1.22311 0.92611 0.91881 0.89914 0.89433 0.89817 0.90867 0.91109 0.90051 0.90057 0.88298 0.90773 0.87577 0.89211 0.93254 0.91877 0.95644 0.94628 0.79672 0.94099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.14 71.98 0.66 -1.81 16 2 C -0.09 -1.98 3.03 -9.52 -0.03 -2.01 16 3 H 0.10 2.08 8.04 -2.39 -0.02 2.06 16 4 C 0.10 2.42 5.07 86.73 0.44 2.86 16 5 N -0.61 -19.07 3.33 -815.80 -2.71 -21.78 16 6 C 0.55 18.07 7.80 86.63 0.68 18.75 16 7 O -0.56 -22.06 14.37 -4.04 -0.06 -22.11 16 8 C -0.02 -0.61 7.31 23.50 0.17 -0.44 16 9 F -0.13 -2.90 14.16 44.97 0.64 -2.26 16 10 C -0.06 -1.33 6.16 -16.99 -0.10 -1.43 16 11 C -0.09 -1.89 4.81 30.52 0.15 -1.74 16 12 C -0.12 -1.68 6.88 31.70 0.22 -1.46 16 13 C -0.12 -1.21 6.94 31.91 0.22 -0.99 16 14 C -0.09 -1.24 6.44 30.85 0.20 -1.04 16 15 C 0.12 4.40 6.08 86.86 0.53 4.93 16 16 C -0.09 -2.94 2.56 -9.31 -0.02 -2.96 16 17 H 0.08 2.62 8.04 -2.39 -0.02 2.60 16 18 C 0.17 6.49 5.72 86.38 0.49 6.99 16 19 N -0.75 -38.62 5.45 -343.44 -1.87 -40.49 16 20 C -0.24 -13.68 9.99 84.03 0.84 -12.84 16 21 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 22 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 23 N -0.97 -61.35 13.06 21.65 0.28 -61.06 16 24 Si 0.97 46.99 29.55 68.60 2.03 49.02 16 25 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 27 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 28 H 0.05 1.05 8.13 -2.39 -0.02 1.03 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.74 7.69 -2.39 -0.02 1.73 16 32 H 0.08 1.76 7.24 -2.39 -0.02 1.75 16 33 H 0.07 1.87 7.67 -2.39 -0.02 1.85 16 34 H 0.07 1.83 7.68 -2.39 -0.02 1.81 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.05 2.11 8.04 -2.39 -0.02 2.10 16 42 H 0.06 2.37 8.00 -2.39 -0.02 2.35 16 43 H 0.03 0.99 8.10 -2.39 -0.02 0.97 16 44 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.37 20.82 7.53 -92.71 -0.70 20.12 16 46 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -71.41 370.27 3.47 -67.94 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.27 Total: 28.13 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 4.90 Total: 2.62 kcal Atomic # 7 Polarization: -119.03 SS G_CDS: -4.30 Total: -123.33 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.06 Total: -22.11 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.64 Total: -2.26 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -71.41 3.47 -67.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106005197.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.433 kcal (2) G-P(sol) polarization free energy of solvation -71.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds