Wall clock time and date at job start Fri Apr 10 2020 22:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50707 * 119.99447 * 2 1 4 4 C 1.33110 * 120.00614 * 179.97438 * 2 1 3 5 5 F 1.35093 * 120.00444 * 185.47775 * 4 2 1 6 6 C 1.47307 * 119.99608 * 5.48128 * 4 2 1 7 7 O 1.21603 * 119.99689 * 354.23887 * 6 4 2 8 8 N 1.34777 * 119.99636 * 174.24685 * 6 4 2 9 9 C 1.46499 * 119.99447 * 179.97438 * 8 6 4 10 10 C 1.52997 * 109.47167 * 179.97438 * 9 8 6 11 11 C 1.53358 * 111.22844 * 297.62910 * 10 9 8 12 12 C 1.55530 * 105.83878 * 241.96897 * 11 10 9 13 13 C 1.54683 * 104.35031 * 334.35691 * 12 11 10 14 14 C 1.54570 * 111.32307 * 177.45385 * 10 9 8 15 15 H 1.08999 * 111.92379 * 18.71229 * 14 10 9 16 16 N 1.46895 * 107.36798 * 255.62370 * 14 10 9 17 17 C 1.36939 * 125.25330 * 181.63816 * 16 14 10 18 18 H 1.07998 * 119.99662 * 359.97438 * 17 16 14 19 19 C 1.38808 * 119.99883 * 179.97438 * 17 16 14 20 20 N 1.31612 * 120.00503 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99583 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47039 * 60.00136 * 21 19 17 23 23 H 1.48506 * 109.47152 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47067 * 299.99947 * 21 19 17 25 25 C 1.46738 * 109.49832 * 1.64831 * 16 14 10 26 26 C 1.53873 * 111.25835 * 61.01265 * 10 9 8 27 27 H 1.09004 * 109.46967 * 237.10821 * 1 2 3 28 28 H 1.08996 * 109.47555 * 357.10554 * 1 2 3 29 29 H 1.09001 * 109.47050 * 117.11188 * 1 2 3 30 30 H 1.09003 * 109.46714 * 269.99691 * 3 2 1 31 31 H 1.08998 * 109.47572 * 29.99654 * 3 2 1 32 32 H 1.09004 * 109.46792 * 150.00085 * 3 2 1 33 33 H 0.96991 * 120.00378 * 359.97438 * 8 6 4 34 34 H 1.09002 * 109.47452 * 59.99862 * 9 8 6 35 35 H 1.09001 * 109.47345 * 299.99625 * 9 8 6 36 36 H 1.08999 * 110.05464 * 1.97969 * 11 10 9 37 37 H 1.09006 * 110.05852 * 123.46714 * 11 10 9 38 38 H 1.09005 * 110.54479 * 215.54332 * 12 11 10 39 39 H 1.08999 * 110.34979 * 93.07619 * 12 11 10 40 40 H 1.08999 * 110.61457 * 278.64628 * 13 12 11 41 41 H 1.09005 * 110.60989 * 155.66466 * 13 12 11 42 42 H 0.96997 * 120.00381 * 179.97438 * 20 19 17 43 43 H 1.09000 * 110.04811 * 221.96803 * 25 16 14 44 44 H 1.09001 * 110.03752 * 100.51606 * 25 16 14 45 45 H 1.08999 * 110.57186 * 212.51912 * 26 10 9 46 46 H 1.09002 * 110.56938 * 335.24417 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1727 -1.1527 0.0005 5 9 3.5190 -1.1553 0.1122 6 6 1.4413 -2.4256 -0.1208 7 8 0.2252 -2.4309 -0.1159 8 7 2.1199 -3.5842 -0.2370 9 6 1.3924 -4.8502 -0.3571 10 6 2.3912 -6.0031 -0.4749 11 6 3.2494 -5.8674 -1.7386 12 6 2.9371 -7.1235 -2.6008 13 6 2.4790 -8.1877 -1.5760 14 6 1.6688 -7.3681 -0.5404 15 1 0.6202 -7.2606 -0.8177 16 7 1.8239 -8.0097 0.7719 17 6 1.3501 -9.2503 1.1061 18 1 0.8133 -9.8379 0.3761 19 6 1.5599 -9.7525 2.3830 20 7 2.2146 -9.0366 3.2724 21 14 0.9130 -11.4446 2.8390 22 1 1.5224 -12.4642 1.9478 23 1 1.2652 -11.7455 4.2499 24 1 -0.5635 -11.4688 2.6820 25 6 2.5647 -7.1160 1.6695 26 6 3.2882 -6.0938 0.7720 27 1 -0.3633 -0.5581 0.8630 28 1 -0.3634 1.0263 0.0519 29 1 -0.3633 -0.4683 -0.9148 30 1 2.4421 1.6198 -1.0277 31 1 1.6713 2.0649 0.5138 32 1 3.2129 1.1749 0.5138 33 1 3.0897 -3.5799 -0.2412 34 1 0.7617 -4.8240 -1.2457 35 1 0.7702 -4.9969 0.5258 36 1 2.9882 -4.9530 -2.2714 37 1 4.3066 -5.8568 -1.4732 38 1 3.8315 -7.4592 -3.1258 39 1 2.1380 -6.9074 -3.3099 40 1 3.3397 -8.6604 -1.1028 41 1 1.8453 -8.9341 -2.0552 42 1 2.3608 -9.3874 4.1648 43 1 3.2918 -7.6861 2.2478 44 1 1.8743 -6.6028 2.3388 45 1 4.2812 -6.4546 0.5040 46 1 3.3546 -5.1251 1.2673 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107356471.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:22 Heat of formation + Delta-G solvation = -52.570624 kcal Electronic energy + Delta-G solvation = -26790.711660 eV Core-core repulsion = 23016.229274 eV Total energy + Delta-G solvation = -3774.482386 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.180 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.99850 -40.12989 -39.06390 -35.71815 -34.57257 -33.93196 -31.73543 -30.43033 -28.71266 -27.93329 -27.09369 -26.67400 -24.42300 -23.83268 -21.69368 -20.07027 -19.89910 -19.51381 -18.35912 -17.76556 -16.85377 -16.19670 -16.08857 -15.34211 -15.11164 -15.00366 -14.68226 -14.25101 -14.03214 -13.79163 -13.52111 -13.20421 -13.12618 -12.92118 -12.79526 -12.57971 -12.49510 -12.41054 -11.89275 -11.82796 -11.49471 -11.26912 -11.12853 -10.79806 -10.72392 -10.65557 -10.26488 -10.13268 -10.06618 -9.84395 -9.69502 -9.57829 -9.46662 -9.19614 -8.77788 -8.57951 -6.80379 -5.64093 -3.03209 0.98984 3.00783 3.05617 3.41923 3.46455 3.47407 4.16196 4.46568 4.50927 4.63726 4.90746 4.98395 4.99701 5.02924 5.19360 5.44933 5.50846 5.52251 5.56331 5.58203 5.66205 5.75644 5.79106 5.83904 5.87790 5.99691 6.03490 6.07867 6.08668 6.16623 6.31478 6.31589 6.37431 6.43772 6.47804 6.60420 6.70308 6.76787 6.86272 7.12785 7.49290 7.57033 7.69351 7.88547 8.09591 8.37209 9.26168 9.87272 10.50677 11.41390 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.019821 B = 0.003441 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.320469 B = 8134.523914 C = 8708.248495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.077 4.077 3 C -0.125 4.125 4 C -0.024 4.024 5 F -0.139 7.139 6 C 0.542 3.458 7 O -0.523 6.523 8 N -0.713 5.713 9 C 0.141 3.859 10 C -0.083 4.083 11 C -0.111 4.111 12 C -0.122 4.122 13 C -0.130 4.130 14 C 0.174 3.826 15 H 0.047 0.953 16 N -0.596 5.596 17 C -0.221 4.221 18 H 0.076 0.924 19 C -0.010 4.010 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.163 3.837 26 C -0.134 4.134 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.404 0.596 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.251 0.749 43 H 0.093 0.907 44 H 0.012 0.988 45 H 0.061 0.939 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.504 17.277 -9.394 19.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.080 4.080 3 C -0.181 4.181 4 C -0.046 4.046 5 F -0.118 7.118 6 C 0.328 3.672 7 O -0.402 6.402 8 N -0.363 5.363 9 C 0.018 3.982 10 C -0.084 4.084 11 C -0.149 4.149 12 C -0.160 4.160 13 C -0.170 4.170 14 C 0.065 3.935 15 H 0.065 0.935 16 N -0.320 5.320 17 C -0.349 4.349 18 H 0.094 0.906 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 C 0.038 3.962 26 C -0.172 4.172 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.239 0.761 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.111 0.889 44 H 0.030 0.970 45 H 0.080 0.920 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.680 17.080 -9.158 19.453 hybrid contribution 0.474 -0.900 0.336 1.071 sum 2.154 16.180 -8.822 18.555 Atomic orbital electron populations 1.20917 0.88789 1.01720 1.04744 1.22719 0.98088 0.93609 0.93632 1.20931 1.00340 0.93686 1.03162 1.19482 0.77267 0.94679 1.13183 1.91452 1.29243 1.97116 1.93978 1.18188 0.87472 0.83470 0.78041 1.90830 1.12399 1.86419 1.50529 1.45974 1.10856 1.06402 1.73069 1.21413 0.94021 0.80467 1.02302 1.21884 0.95598 0.94773 0.96100 1.22383 0.99306 0.97884 0.95362 1.22519 1.00131 0.95687 0.97666 1.22992 1.00633 0.97092 0.96278 1.21513 0.95561 0.88582 0.87803 0.93511 1.44327 1.64541 1.15879 1.07211 1.18986 1.28854 0.90953 0.96135 0.90587 1.24772 1.00970 0.98631 0.96189 1.69869 1.45776 1.36695 1.04713 0.86199 0.78493 0.83794 0.77279 1.21230 1.21674 1.21263 1.21431 0.94835 0.89210 0.90685 1.22807 0.98410 1.00127 0.95902 0.89465 0.92236 0.89656 0.90020 0.90522 0.90805 0.76115 0.91414 0.90620 0.92277 0.91737 0.92516 0.92408 0.90950 0.92713 0.93790 0.88919 0.96986 0.92027 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 8.34 36.01 0.30 -0.76 16 2 C -0.08 -0.79 6.11 -101.13 -0.62 -1.41 16 3 C -0.12 -0.92 9.82 36.01 0.35 -0.56 16 4 C -0.02 -0.29 7.36 -37.68 -0.28 -0.57 16 5 F -0.14 -1.66 15.79 2.25 0.04 -1.63 16 6 C 0.54 7.81 7.74 -12.57 -0.10 7.71 16 7 O -0.52 -8.67 13.12 5.27 0.07 -8.60 16 8 N -0.71 -9.93 4.64 -61.42 -0.29 -10.21 16 9 C 0.14 2.24 4.43 -4.04 -0.02 2.22 16 10 C -0.08 -1.36 0.53 -153.04 -0.08 -1.44 16 11 C -0.11 -1.54 5.75 -25.20 -0.14 -1.68 16 12 C -0.12 -1.73 6.88 -24.50 -0.17 -1.89 16 13 C -0.13 -2.33 6.23 -24.82 -0.15 -2.48 16 14 C 0.17 3.45 3.60 -65.87 -0.24 3.21 16 15 H 0.05 0.96 7.93 -51.93 -0.41 0.55 16 16 N -0.60 -14.68 2.99 -162.43 -0.49 -15.16 16 17 C -0.22 -6.02 9.96 -15.06 -0.15 -6.17 16 18 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 19 C -0.01 -0.28 5.48 -17.43 -0.10 -0.38 16 20 N -0.92 -26.79 10.14 55.49 0.56 -26.23 16 21 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 25 C 0.16 3.90 5.65 -3.35 -0.02 3.88 16 26 C -0.13 -2.43 5.77 -25.72 -0.15 -2.58 16 27 H 0.09 1.02 7.22 -51.93 -0.38 0.64 16 28 H 0.06 0.44 7.92 -51.93 -0.41 0.03 16 29 H 0.09 0.95 7.24 -51.93 -0.38 0.57 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.44 8.03 -51.93 -0.42 0.03 16 32 H 0.07 0.56 7.48 -51.93 -0.39 0.17 16 33 H 0.40 5.04 7.11 -40.82 -0.29 4.75 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.06 0.73 7.51 -51.93 -0.39 0.34 16 37 H 0.06 0.85 7.28 -51.93 -0.38 0.48 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.45 8.06 -51.93 -0.42 1.03 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.09 2.51 6.16 -51.93 -0.32 2.19 16 44 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 1.09 7.42 -51.93 -0.39 0.70 16 46 H 0.06 0.94 7.02 -51.93 -0.36 0.57 16 LS Contribution 360.72 15.07 5.44 5.44 Total: -1.00 -29.91 360.72 -8.68 -38.58 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.43 Total: 3.65 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -1.56 Total: -2.90 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.21 Total: -51.60 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.07 Total: -8.60 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.91 -8.68 -38.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107356471.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.987 kcal (2) G-P(sol) polarization free energy of solvation -29.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds