Wall clock time and date at job start Fri Apr 10 2020 22:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50707 * 119.99447 * 2 1 4 4 C 1.33110 * 120.00614 * 179.97438 * 2 1 3 5 5 F 1.35093 * 120.00444 * 185.47775 * 4 2 1 6 6 C 1.47307 * 119.99608 * 5.48128 * 4 2 1 7 7 O 1.21603 * 119.99689 * 354.23887 * 6 4 2 8 8 N 1.34777 * 119.99636 * 174.24685 * 6 4 2 9 9 C 1.46499 * 119.99447 * 179.97438 * 8 6 4 10 10 C 1.52997 * 109.47167 * 179.97438 * 9 8 6 11 11 C 1.53358 * 111.22844 * 297.62910 * 10 9 8 12 12 C 1.55530 * 105.83878 * 241.96897 * 11 10 9 13 13 C 1.54683 * 104.35031 * 334.35691 * 12 11 10 14 14 C 1.54570 * 111.32307 * 177.45385 * 10 9 8 15 15 H 1.08999 * 111.92379 * 18.71229 * 14 10 9 16 16 N 1.46895 * 107.36798 * 255.62370 * 14 10 9 17 17 C 1.36939 * 125.25330 * 181.63816 * 16 14 10 18 18 H 1.07998 * 119.99662 * 359.97438 * 17 16 14 19 19 C 1.38808 * 119.99883 * 179.97438 * 17 16 14 20 20 N 1.31612 * 120.00503 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99583 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47039 * 60.00136 * 21 19 17 23 23 H 1.48506 * 109.47152 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47067 * 299.99947 * 21 19 17 25 25 C 1.46738 * 109.49832 * 1.64831 * 16 14 10 26 26 C 1.53873 * 111.25835 * 61.01265 * 10 9 8 27 27 H 1.09004 * 109.46967 * 237.10821 * 1 2 3 28 28 H 1.08996 * 109.47555 * 357.10554 * 1 2 3 29 29 H 1.09001 * 109.47050 * 117.11188 * 1 2 3 30 30 H 1.09003 * 109.46714 * 269.99691 * 3 2 1 31 31 H 1.08998 * 109.47572 * 29.99654 * 3 2 1 32 32 H 1.09004 * 109.46792 * 150.00085 * 3 2 1 33 33 H 0.96991 * 120.00378 * 359.97438 * 8 6 4 34 34 H 1.09002 * 109.47452 * 59.99862 * 9 8 6 35 35 H 1.09001 * 109.47345 * 299.99625 * 9 8 6 36 36 H 1.08999 * 110.05464 * 1.97969 * 11 10 9 37 37 H 1.09006 * 110.05852 * 123.46714 * 11 10 9 38 38 H 1.09005 * 110.54479 * 215.54332 * 12 11 10 39 39 H 1.08999 * 110.34979 * 93.07619 * 12 11 10 40 40 H 1.08999 * 110.61457 * 278.64628 * 13 12 11 41 41 H 1.09005 * 110.60989 * 155.66466 * 13 12 11 42 42 H 0.96997 * 120.00381 * 179.97438 * 20 19 17 43 43 H 1.09000 * 110.04811 * 221.96803 * 25 16 14 44 44 H 1.09001 * 110.03752 * 100.51606 * 25 16 14 45 45 H 1.08999 * 110.57186 * 212.51912 * 26 10 9 46 46 H 1.09002 * 110.56938 * 335.24417 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1727 -1.1527 0.0005 5 9 3.5190 -1.1553 0.1122 6 6 1.4413 -2.4256 -0.1208 7 8 0.2252 -2.4309 -0.1159 8 7 2.1199 -3.5842 -0.2370 9 6 1.3924 -4.8502 -0.3571 10 6 2.3912 -6.0031 -0.4749 11 6 3.2494 -5.8674 -1.7386 12 6 2.9371 -7.1235 -2.6008 13 6 2.4790 -8.1877 -1.5760 14 6 1.6688 -7.3681 -0.5404 15 1 0.6202 -7.2606 -0.8177 16 7 1.8239 -8.0097 0.7719 17 6 1.3501 -9.2503 1.1061 18 1 0.8133 -9.8379 0.3761 19 6 1.5599 -9.7525 2.3830 20 7 2.2146 -9.0366 3.2724 21 14 0.9130 -11.4446 2.8390 22 1 1.5224 -12.4642 1.9478 23 1 1.2652 -11.7455 4.2499 24 1 -0.5635 -11.4688 2.6820 25 6 2.5647 -7.1160 1.6695 26 6 3.2882 -6.0938 0.7720 27 1 -0.3633 -0.5581 0.8630 28 1 -0.3634 1.0263 0.0519 29 1 -0.3633 -0.4683 -0.9148 30 1 2.4421 1.6198 -1.0277 31 1 1.6713 2.0649 0.5138 32 1 3.2129 1.1749 0.5138 33 1 3.0897 -3.5799 -0.2412 34 1 0.7617 -4.8240 -1.2457 35 1 0.7702 -4.9969 0.5258 36 1 2.9882 -4.9530 -2.2714 37 1 4.3066 -5.8568 -1.4732 38 1 3.8315 -7.4592 -3.1258 39 1 2.1380 -6.9074 -3.3099 40 1 3.3397 -8.6604 -1.1028 41 1 1.8453 -8.9341 -2.0552 42 1 2.3608 -9.3874 4.1648 43 1 3.2918 -7.6861 2.2478 44 1 1.8743 -6.6028 2.3388 45 1 4.2812 -6.4546 0.5040 46 1 3.3546 -5.1251 1.2673 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107356471.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:22 Heat of formation + Delta-G solvation = -69.616496 kcal Electronic energy + Delta-G solvation = -26791.450825 eV Core-core repulsion = 23016.229274 eV Total energy + Delta-G solvation = -3775.221550 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.180 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.87677 -41.44322 -40.38102 -36.77876 -36.00669 -35.30447 -33.47531 -32.11810 -29.91714 -28.77858 -28.37116 -28.13682 -25.80895 -25.62001 -22.87859 -21.75238 -21.28486 -20.58281 -19.57229 -19.05391 -18.66947 -17.19329 -17.07465 -16.84191 -16.52521 -16.30609 -16.10848 -15.61882 -15.35237 -15.10706 -14.58819 -14.57286 -14.35641 -14.09932 -13.94594 -13.66878 -13.46041 -13.33488 -13.27585 -13.16830 -12.92207 -12.84817 -12.61820 -12.55868 -12.43446 -12.06117 -11.89141 -11.62184 -11.54736 -11.44615 -11.34791 -11.06738 -10.81036 -10.67442 -10.30941 -9.77069 -8.83634 -7.76760 -5.17391 0.08204 1.44990 1.47946 1.54015 1.92853 1.96449 2.50427 3.17219 3.33636 3.49260 3.63247 3.66512 3.68547 3.88842 3.95660 4.24439 4.25874 4.35341 4.41915 4.51518 4.56060 4.64439 4.65114 4.68239 4.79247 4.83599 4.86167 4.91381 4.94485 5.01488 5.06550 5.14215 5.14714 5.19454 5.28439 5.36059 5.40140 5.44629 5.50683 5.52149 5.60163 5.70263 5.85926 6.30751 6.40119 6.99552 7.14631 7.84538 8.46078 9.26912 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.019821 B = 0.003441 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.320469 B = 8134.523914 C = 8708.248495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.053 4.053 3 C -0.125 4.125 4 C -0.050 4.050 5 F -0.138 7.138 6 C 0.539 3.461 7 O -0.552 6.552 8 N -0.707 5.707 9 C 0.153 3.847 10 C -0.069 4.069 11 C -0.103 4.103 12 C -0.111 4.111 13 C -0.125 4.125 14 C 0.159 3.841 15 H 0.039 0.961 16 N -0.614 5.614 17 C -0.229 4.229 18 H 0.079 0.921 19 C -0.069 4.069 20 N -0.951 5.951 21 Si 0.975 3.025 22 H -0.276 1.276 23 H -0.296 1.296 24 H -0.281 1.281 25 C 0.170 3.830 26 C -0.118 4.118 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.413 0.587 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.244 0.756 43 H 0.057 0.943 44 H -0.027 1.027 45 H 0.073 0.927 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.270 19.266 -11.696 22.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.057 4.057 3 C -0.181 4.181 4 C -0.072 4.072 5 F -0.117 7.117 6 C 0.327 3.673 7 O -0.433 6.433 8 N -0.358 5.358 9 C 0.029 3.971 10 C -0.070 4.070 11 C -0.140 4.140 12 C -0.148 4.148 13 C -0.164 4.164 14 C 0.052 3.948 15 H 0.057 0.943 16 N -0.338 5.338 17 C -0.358 4.358 18 H 0.097 0.903 19 C -0.261 4.261 20 N -0.601 5.601 21 Si 0.804 3.196 22 H -0.202 1.202 23 H -0.222 1.222 24 H -0.208 1.208 25 C 0.044 3.956 26 C -0.157 4.157 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.093 0.907 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.250 0.750 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.075 0.925 44 H -0.009 1.009 45 H 0.092 0.908 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.466 19.084 -11.506 22.420 hybrid contribution 0.142 -1.451 1.062 1.804 sum 2.607 17.633 -10.443 20.659 Atomic orbital electron populations 1.20922 0.88799 1.03255 1.03294 1.23130 0.98258 0.94392 0.89872 1.21066 1.00190 0.92286 1.04575 1.19215 0.77476 0.94018 1.16504 1.91451 1.28884 1.97039 1.94342 1.18585 0.87324 0.84202 0.77208 1.90818 1.13669 1.86948 1.51861 1.45828 1.11176 1.05630 1.73145 1.21114 0.93709 0.81339 1.00930 1.21768 0.95264 0.93059 0.96919 1.22362 0.99323 0.98842 0.93522 1.22471 1.01574 0.93986 0.96819 1.22817 0.99202 0.97880 0.96536 1.21806 0.96006 0.90767 0.86237 0.94278 1.44586 1.64512 1.15491 1.09192 1.19346 1.28147 0.92103 0.96251 0.90285 1.25583 1.01945 1.02218 0.96390 1.70129 1.47262 1.38109 1.04579 0.85196 0.77965 0.79890 0.76562 1.20174 1.22219 1.20752 1.21156 0.93446 0.89749 0.91218 1.22639 0.98440 0.98992 0.95616 0.91380 0.89091 0.90708 0.88145 0.88400 0.90822 0.75027 0.90687 0.94269 0.89899 0.90351 0.90349 0.90727 0.93358 0.92925 0.94635 0.92489 1.00947 0.90792 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 8.34 71.24 0.59 -1.37 16 2 C -0.05 -0.98 6.11 -17.60 -0.11 -1.08 16 3 C -0.13 -1.40 9.82 71.24 0.70 -0.70 16 4 C -0.05 -1.15 7.36 23.51 0.17 -0.97 16 5 F -0.14 -3.04 15.79 44.97 0.71 -2.33 16 6 C 0.54 15.21 7.74 86.63 0.67 15.88 16 7 O -0.55 -18.43 13.12 -4.04 -0.05 -18.48 16 8 N -0.71 -18.98 4.64 -466.50 -2.17 -21.14 16 9 C 0.15 4.82 4.43 86.38 0.38 5.20 16 10 C -0.07 -2.21 0.53 -51.23 -0.03 -2.24 16 11 C -0.10 -2.48 5.75 31.59 0.18 -2.30 16 12 C -0.11 -2.75 6.88 32.04 0.22 -2.53 16 13 C -0.12 -4.35 6.23 31.83 0.20 -4.15 16 14 C 0.16 6.35 3.60 46.11 0.17 6.51 16 15 H 0.04 1.63 7.93 -2.39 -0.02 1.61 16 16 N -0.61 -31.41 2.99 -667.82 -1.99 -33.41 16 17 C -0.23 -12.91 9.96 84.03 0.84 -12.07 16 18 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 19 C -0.07 -3.98 5.48 84.86 0.47 -3.52 16 20 N -0.95 -57.95 10.14 21.65 0.22 -57.73 16 21 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 25 C 0.17 8.53 5.65 86.70 0.49 9.02 16 26 C -0.12 -4.30 5.77 31.25 0.18 -4.12 16 27 H 0.07 1.56 7.22 -2.38 -0.02 1.55 16 28 H 0.09 1.08 7.92 -2.39 -0.02 1.06 16 29 H 0.07 1.58 7.24 -2.39 -0.02 1.56 16 30 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.10 0.72 8.03 -2.39 -0.02 0.70 16 32 H 0.07 0.88 7.48 -2.38 -0.02 0.87 16 33 H 0.41 9.51 7.11 -92.72 -0.66 8.85 16 34 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.08 1.69 7.51 -2.39 -0.02 1.67 16 37 H 0.08 1.75 7.28 -2.38 -0.02 1.73 16 38 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.05 1.91 8.06 -2.39 -0.02 1.89 16 41 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 42 H 0.24 14.57 8.31 -92.71 -0.77 13.80 16 43 H 0.06 3.27 6.16 -2.39 -0.01 3.25 16 44 H -0.03 -1.56 8.14 -2.39 -0.02 -1.58 16 45 H 0.07 2.53 7.42 -2.39 -0.02 2.51 16 46 H 0.07 2.38 7.02 -2.39 -0.02 2.36 16 Total: -1.00 -69.17 360.72 4.18 -64.99 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.32 Total: 17.88 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: 5.12 Total: 1.56 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -3.94 Total: -112.28 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.05 Total: -18.48 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.71 Total: -2.33 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -69.17 4.18 -64.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107356471.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.631 kcal (2) G-P(sol) polarization free energy of solvation -69.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds