Wall clock time and date at job start Fri Apr 10 2020 22:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50692 * 120.00291 * 2 1 4 4 C 1.33117 * 119.99844 * 179.97438 * 2 1 3 5 5 F 1.35100 * 119.99877 * 174.39225 * 4 2 1 6 6 C 1.47297 * 120.00340 * 354.39410 * 4 2 1 7 7 O 1.21607 * 119.99828 * 353.28012 * 6 4 2 8 8 N 1.34769 * 120.00351 * 173.28207 * 6 4 2 9 9 C 1.48119 * 127.84395 * 0.02562 * 8 6 4 10 10 C 1.54323 * 104.68998 * 219.73044 * 9 8 6 11 11 H 1.08999 * 111.85106 * 214.54285 * 10 9 8 12 12 C 1.54164 * 108.86823 * 89.54319 * 10 9 8 13 13 C 1.54841 * 104.33113 * 271.20379 * 12 10 9 14 14 C 1.57143 * 102.90984 * 321.70595 * 13 12 10 15 15 C 1.54160 * 103.23227 * 38.20181 * 14 13 12 16 16 C 1.53010 * 111.81923 * 213.14889 * 15 14 13 17 17 N 1.46497 * 109.46840 * 298.61273 * 16 15 14 18 18 C 1.36938 * 119.99730 * 179.72148 * 17 16 15 19 19 H 1.08000 * 120.00172 * 0.28481 * 18 17 16 20 20 C 1.38813 * 119.99850 * 180.27647 * 18 17 16 21 21 N 1.31619 * 120.00381 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00160 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46708 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47164 * 120.00012 * 22 20 18 25 25 H 1.48501 * 109.47195 * 240.00264 * 22 20 18 26 26 C 1.48115 * 127.84605 * 180.02562 * 8 6 4 27 27 H 1.08999 * 109.47459 * 243.23739 * 1 2 3 28 28 H 1.08995 * 109.46573 * 3.24074 * 1 2 3 29 29 H 1.09000 * 109.46511 * 123.23384 * 1 2 3 30 30 H 1.09012 * 109.46945 * 269.99575 * 3 2 1 31 31 H 1.08996 * 109.47197 * 29.99003 * 3 2 1 32 32 H 1.08994 * 109.47857 * 149.99391 * 3 2 1 33 33 H 1.08999 * 110.38802 * 338.53432 * 9 8 6 34 34 H 1.09001 * 110.39309 * 100.81018 * 9 8 6 35 35 H 1.08997 * 110.46034 * 29.91506 * 12 10 9 36 36 H 1.09000 * 110.46148 * 152.48802 * 12 10 9 37 37 H 1.08990 * 110.76028 * 80.14041 * 13 12 10 38 38 H 1.09006 * 110.75435 * 203.33586 * 13 12 10 39 39 H 1.09004 * 111.52418 * 279.59395 * 14 13 12 40 40 H 1.09002 * 110.44939 * 156.29503 * 14 13 12 41 41 H 1.08993 * 109.47086 * 178.61677 * 16 15 14 42 42 H 1.08999 * 109.47228 * 58.61591 * 16 15 14 43 43 H 0.97006 * 120.00467 * 0.02562 * 17 16 15 44 44 H 0.96995 * 120.00393 * 180.02562 * 21 20 18 45 45 H 1.09003 * 110.38782 * 21.48062 * 26 8 6 46 46 H 1.09004 * 110.39103 * 259.10332 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1726 -1.1528 0.0005 5 9 3.5187 -1.1557 -0.1138 6 6 1.4414 -2.4254 0.1257 7 8 0.2464 -2.4204 0.3509 8 7 2.0968 -3.5953 -0.0093 9 6 3.5376 -3.8035 -0.2822 10 6 3.5814 -4.9856 -1.2732 11 1 4.4549 -5.6176 -1.1126 12 6 3.5072 -4.4340 -2.7109 13 6 1.9908 -4.3583 -3.0146 14 6 1.4300 -5.6557 -2.3277 15 6 2.2586 -5.7550 -1.0315 16 6 2.5094 -7.2091 -0.6269 17 7 1.2284 -7.8733 -0.3733 18 6 1.2023 -9.1906 -0.0003 19 1 2.1261 -9.7387 0.1115 20 6 -0.0118 -9.8214 0.2344 21 7 -1.1377 -9.1537 0.0978 22 14 -0.0475 -11.6183 0.7440 23 1 1.3414 -12.1373 0.8256 24 1 -0.7022 -11.7435 2.0710 25 1 -0.8103 -12.4025 -0.2602 26 6 1.5397 -4.9647 0.0816 27 1 -0.3634 -0.4627 0.9176 28 1 -0.3632 1.0260 -0.0581 29 1 -0.3632 -0.5632 -0.8596 30 1 2.4423 1.6196 -1.0278 31 1 1.6715 2.0647 0.5137 32 1 3.2129 1.1748 0.5139 33 1 3.9711 -2.9118 -0.7351 34 1 4.0656 -4.0565 0.6372 35 1 3.9560 -3.4420 -2.7619 36 1 4.0016 -5.1130 -3.4055 37 1 1.5519 -3.4651 -2.5704 38 1 1.8104 -4.3822 -4.0894 39 1 1.5875 -6.5372 -2.9492 40 1 0.3717 -5.5364 -2.0952 41 1 3.1172 -7.2349 0.2775 42 1 3.0332 -7.7251 -1.4316 43 1 0.3986 -7.3811 -0.4740 44 1 -1.9860 -9.5944 0.2622 45 1 0.4645 -4.9499 -0.0969 46 1 1.7576 -5.3993 1.0572 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112301099.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:26 Heat of formation + Delta-G solvation = -53.366636 kcal Electronic energy + Delta-G solvation = -27181.342180 eV Core-core repulsion = 23406.825276 eV Total energy + Delta-G solvation = -3774.516904 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.180 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.10094 -40.60887 -38.82779 -35.48036 -34.67288 -33.99287 -31.70189 -29.89514 -29.52347 -28.25553 -27.55502 -25.47932 -25.29597 -23.70455 -22.10609 -20.99787 -20.12407 -19.06900 -18.52113 -17.53849 -16.89904 -16.43920 -16.05048 -15.73230 -15.44973 -14.55968 -14.46138 -14.19302 -13.95708 -13.79719 -13.44849 -13.35975 -13.13665 -13.12390 -12.97750 -12.81987 -12.58710 -12.56000 -12.30387 -12.00236 -11.67557 -11.47196 -11.14866 -10.84993 -10.73912 -10.69061 -10.56147 -10.48961 -10.33932 -10.20201 -9.91381 -9.69444 -9.63205 -9.10398 -8.86593 -8.46467 -6.90219 -5.74218 -3.03136 0.99288 2.87823 3.02974 3.44733 3.50174 3.52575 4.00980 4.37316 4.48777 4.60121 4.61974 4.71942 4.76655 4.98651 5.18279 5.31421 5.32344 5.37327 5.43768 5.48020 5.54014 5.59492 5.64022 5.67487 5.69374 5.75414 5.80318 5.84784 5.91710 5.95681 6.02261 6.12581 6.17642 6.23341 6.28272 6.33772 6.36448 6.54186 6.56011 6.65818 6.77168 6.81379 7.58143 7.72172 8.05769 8.44087 9.55680 10.13033 10.47788 11.48442 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.021288 B = 0.003580 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.996105 B = 7819.128693 C = 8424.940061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.077 4.077 3 C -0.123 4.123 4 C -0.019 4.019 5 F -0.136 7.136 6 C 0.563 3.437 7 O -0.522 6.522 8 N -0.608 5.608 9 C 0.092 3.908 10 C -0.098 4.098 11 H 0.095 0.905 12 C -0.113 4.113 13 C -0.123 4.123 14 C -0.103 4.103 15 C -0.075 4.075 16 C 0.173 3.827 17 N -0.730 5.730 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.121 3.879 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.020 0.980 42 H 0.024 0.976 43 H 0.385 0.615 44 H 0.254 0.746 45 H 0.087 0.913 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.186 20.203 -3.627 22.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.081 4.081 3 C -0.179 4.179 4 C -0.041 4.041 5 F -0.115 7.115 6 C 0.351 3.649 7 O -0.401 6.401 8 N -0.340 5.340 9 C -0.031 4.031 10 C -0.117 4.117 11 H 0.113 0.887 12 C -0.151 4.151 13 C -0.160 4.160 14 C -0.140 4.140 15 C -0.077 4.077 16 C 0.045 3.955 17 N -0.375 5.375 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.000 4.000 27 H 0.111 0.889 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.038 0.962 42 H 0.042 0.958 43 H 0.219 0.781 44 H 0.064 0.936 45 H 0.106 0.894 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.599 20.114 -3.436 22.550 hybrid contribution 0.041 -0.963 0.313 1.013 sum 9.640 19.151 -3.123 21.667 Atomic orbital electron populations 1.20928 0.88792 1.01791 1.04895 1.22700 0.98090 0.93499 0.93770 1.20909 1.00182 0.93696 1.03156 1.19428 0.77107 0.94462 1.13139 1.91370 1.29471 1.96783 1.93871 1.17731 0.86584 0.82180 0.78365 1.90847 1.13517 1.86012 1.49685 1.48873 1.10420 1.05836 1.68857 1.22880 0.81577 0.99453 0.99143 1.22706 0.98477 0.95604 0.94950 0.88664 1.22353 0.96920 1.00176 0.95620 1.22845 0.95158 0.98353 0.99679 1.22744 0.99113 0.96970 0.95210 1.22268 0.94005 0.95913 0.95467 1.20605 0.90167 0.87731 0.97007 1.42350 1.02317 1.10098 1.82717 1.19248 0.92531 0.87178 1.38094 0.91182 1.24733 0.95375 0.98141 1.02654 1.69666 0.96717 1.35709 1.55862 0.86141 0.77221 0.85137 0.77819 1.20605 1.21913 1.21930 1.22527 0.99670 0.78712 0.99102 0.88930 0.92126 0.90112 0.90145 0.90395 0.90935 0.88828 0.91077 0.92005 0.91410 0.92246 0.92111 0.90734 0.91344 0.96190 0.95801 0.78123 0.93560 0.89428 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 8.34 36.01 0.30 -0.83 16 2 C -0.08 -0.81 6.11 -101.13 -0.62 -1.43 16 3 C -0.12 -0.90 9.73 36.00 0.35 -0.55 16 4 C -0.02 -0.24 7.25 -37.68 -0.27 -0.51 16 5 F -0.14 -1.60 13.23 2.25 0.03 -1.57 16 6 C 0.56 8.63 7.75 -12.58 -0.10 8.53 16 7 O -0.52 -9.27 13.50 5.27 0.07 -9.20 16 8 N -0.61 -9.04 2.53 -170.77 -0.43 -9.47 16 9 C 0.09 1.13 5.98 -2.46 -0.01 1.12 16 10 C -0.10 -1.23 3.62 -88.31 -0.32 -1.55 16 11 H 0.10 1.10 7.88 -51.93 -0.41 0.69 16 12 C -0.11 -1.31 6.28 -25.15 -0.16 -1.47 16 13 C -0.12 -1.63 6.57 -23.51 -0.15 -1.79 16 14 C -0.10 -1.66 5.50 -23.88 -0.13 -1.79 16 15 C -0.08 -1.20 0.67 -152.21 -0.10 -1.30 16 16 C 0.17 3.36 5.10 -4.04 -0.02 3.34 16 17 N -0.73 -18.06 5.23 -59.91 -0.31 -18.38 16 18 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 22 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 C 0.12 2.07 5.51 -2.48 -0.01 2.06 16 27 H 0.09 1.13 6.94 -51.93 -0.36 0.77 16 28 H 0.06 0.47 7.96 -51.93 -0.41 0.06 16 29 H 0.08 0.95 7.56 -51.93 -0.39 0.56 16 30 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 32 H 0.07 0.53 7.63 -51.93 -0.40 0.14 16 33 H 0.09 1.05 4.87 -51.93 -0.25 0.80 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.85 7.66 -51.93 -0.40 0.45 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.27 7.96 -51.93 -0.41 0.86 16 40 H 0.07 1.22 7.42 -51.93 -0.39 0.84 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.38 10.09 7.06 -40.82 -0.29 9.81 16 44 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.09 1.70 7.15 -51.93 -0.37 1.32 16 46 H 0.08 1.41 7.95 -51.93 -0.41 0.99 16 LS Contribution 360.88 15.07 5.44 5.44 Total: -1.00 -31.09 360.88 -8.39 -39.47 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -7.38 Total: 7.20 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -1.50 Total: -3.43 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.02 Total: -55.36 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.07 Total: -9.20 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.03 Total: -1.57 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.09 -8.39 -39.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112301099.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.892 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds