Wall clock time and date at job start Fri Apr 10 2020 22:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50692 * 120.00291 * 2 1 4 4 C 1.33117 * 119.99844 * 179.97438 * 2 1 3 5 5 F 1.35100 * 119.99877 * 174.39225 * 4 2 1 6 6 C 1.47297 * 120.00340 * 354.39410 * 4 2 1 7 7 O 1.21607 * 119.99828 * 353.28012 * 6 4 2 8 8 N 1.34769 * 120.00351 * 173.28207 * 6 4 2 9 9 C 1.48119 * 127.84395 * 0.02562 * 8 6 4 10 10 C 1.54323 * 104.68998 * 219.73044 * 9 8 6 11 11 H 1.08999 * 111.85106 * 214.54285 * 10 9 8 12 12 C 1.54164 * 108.86823 * 89.54319 * 10 9 8 13 13 C 1.54841 * 104.33113 * 271.20379 * 12 10 9 14 14 C 1.57143 * 102.90984 * 321.70595 * 13 12 10 15 15 C 1.54160 * 103.23227 * 38.20181 * 14 13 12 16 16 C 1.53010 * 111.81923 * 213.14889 * 15 14 13 17 17 N 1.46497 * 109.46840 * 298.61273 * 16 15 14 18 18 C 1.36938 * 119.99730 * 179.72148 * 17 16 15 19 19 H 1.08000 * 120.00172 * 0.28481 * 18 17 16 20 20 C 1.38813 * 119.99850 * 180.27647 * 18 17 16 21 21 N 1.31619 * 120.00381 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00160 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46708 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47164 * 120.00012 * 22 20 18 25 25 H 1.48501 * 109.47195 * 240.00264 * 22 20 18 26 26 C 1.48115 * 127.84605 * 180.02562 * 8 6 4 27 27 H 1.08999 * 109.47459 * 243.23739 * 1 2 3 28 28 H 1.08995 * 109.46573 * 3.24074 * 1 2 3 29 29 H 1.09000 * 109.46511 * 123.23384 * 1 2 3 30 30 H 1.09012 * 109.46945 * 269.99575 * 3 2 1 31 31 H 1.08996 * 109.47197 * 29.99003 * 3 2 1 32 32 H 1.08994 * 109.47857 * 149.99391 * 3 2 1 33 33 H 1.08999 * 110.38802 * 338.53432 * 9 8 6 34 34 H 1.09001 * 110.39309 * 100.81018 * 9 8 6 35 35 H 1.08997 * 110.46034 * 29.91506 * 12 10 9 36 36 H 1.09000 * 110.46148 * 152.48802 * 12 10 9 37 37 H 1.08990 * 110.76028 * 80.14041 * 13 12 10 38 38 H 1.09006 * 110.75435 * 203.33586 * 13 12 10 39 39 H 1.09004 * 111.52418 * 279.59395 * 14 13 12 40 40 H 1.09002 * 110.44939 * 156.29503 * 14 13 12 41 41 H 1.08993 * 109.47086 * 178.61677 * 16 15 14 42 42 H 1.08999 * 109.47228 * 58.61591 * 16 15 14 43 43 H 0.97006 * 120.00467 * 0.02562 * 17 16 15 44 44 H 0.96995 * 120.00393 * 180.02562 * 21 20 18 45 45 H 1.09003 * 110.38782 * 21.48062 * 26 8 6 46 46 H 1.09004 * 110.39103 * 259.10332 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1726 -1.1528 0.0005 5 9 3.5187 -1.1557 -0.1138 6 6 1.4414 -2.4254 0.1257 7 8 0.2464 -2.4204 0.3509 8 7 2.0968 -3.5953 -0.0093 9 6 3.5376 -3.8035 -0.2822 10 6 3.5814 -4.9856 -1.2732 11 1 4.4549 -5.6176 -1.1126 12 6 3.5072 -4.4340 -2.7109 13 6 1.9908 -4.3583 -3.0146 14 6 1.4300 -5.6557 -2.3277 15 6 2.2586 -5.7550 -1.0315 16 6 2.5094 -7.2091 -0.6269 17 7 1.2284 -7.8733 -0.3733 18 6 1.2023 -9.1906 -0.0003 19 1 2.1261 -9.7387 0.1115 20 6 -0.0118 -9.8214 0.2344 21 7 -1.1377 -9.1537 0.0978 22 14 -0.0475 -11.6183 0.7440 23 1 1.3414 -12.1373 0.8256 24 1 -0.7022 -11.7435 2.0710 25 1 -0.8103 -12.4025 -0.2602 26 6 1.5397 -4.9647 0.0816 27 1 -0.3634 -0.4627 0.9176 28 1 -0.3632 1.0260 -0.0581 29 1 -0.3632 -0.5632 -0.8596 30 1 2.4423 1.6196 -1.0278 31 1 1.6715 2.0647 0.5137 32 1 3.2129 1.1748 0.5139 33 1 3.9711 -2.9118 -0.7351 34 1 4.0656 -4.0565 0.6372 35 1 3.9560 -3.4420 -2.7619 36 1 4.0016 -5.1130 -3.4055 37 1 1.5519 -3.4651 -2.5704 38 1 1.8104 -4.3822 -4.0894 39 1 1.5875 -6.5372 -2.9492 40 1 0.3717 -5.5364 -2.0952 41 1 3.1172 -7.2349 0.2775 42 1 3.0332 -7.7251 -1.4316 43 1 0.3986 -7.3811 -0.4740 44 1 -1.9860 -9.5944 0.2622 45 1 0.4645 -4.9499 -0.0969 46 1 1.7576 -5.3993 1.0572 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112301099.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:25 Heat of formation + Delta-G solvation = -71.149109 kcal Electronic energy + Delta-G solvation = -27182.113285 eV Core-core repulsion = 23406.825276 eV Total energy + Delta-G solvation = -3775.288010 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.180 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.98873 -41.82463 -40.02259 -36.63707 -36.18618 -35.26593 -33.51322 -31.23703 -30.91889 -29.15653 -28.53101 -26.91879 -26.55231 -25.29439 -23.69955 -22.05600 -21.25773 -20.20509 -19.73238 -19.14657 -18.32485 -17.65597 -17.10177 -16.84978 -16.46124 -16.41173 -15.73860 -15.43364 -15.25208 -15.02084 -14.86516 -14.59117 -14.47801 -14.30606 -14.09295 -13.95807 -13.65650 -13.40705 -13.21276 -13.19329 -13.03978 -12.85635 -12.71281 -12.52586 -12.13446 -12.04771 -11.85768 -11.79627 -11.70213 -11.58490 -11.51866 -11.41572 -10.94015 -10.82502 -10.09768 -9.59931 -8.98282 -7.93777 -5.22540 0.04780 1.46889 1.47722 1.57802 1.73366 1.89914 2.55948 2.98151 3.33545 3.39454 3.47370 3.56503 3.59761 3.86089 4.14476 4.15298 4.18473 4.22505 4.24066 4.38870 4.44224 4.53823 4.61858 4.63101 4.64501 4.66243 4.75682 4.82173 4.86474 4.91603 4.94240 5.01611 5.02188 5.05086 5.11653 5.18329 5.23992 5.30562 5.33797 5.41507 5.42519 5.51361 5.51777 6.27657 6.43286 6.87556 7.34238 8.10604 8.33116 9.30012 Molecular weight = 310.18amu Principal moments of inertia in cm(-1) A = 0.021288 B = 0.003580 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.996105 B = 7819.128693 C = 8424.940061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.052 4.052 3 C -0.122 4.122 4 C -0.042 4.042 5 F -0.130 7.130 6 C 0.554 3.446 7 O -0.560 6.560 8 N -0.609 5.609 9 C 0.093 3.907 10 C -0.089 4.089 11 H 0.116 0.884 12 C -0.105 4.105 13 C -0.114 4.114 14 C -0.104 4.104 15 C -0.069 4.069 16 C 0.173 3.827 17 N -0.743 5.743 18 C -0.240 4.240 19 H 0.079 0.921 20 C -0.078 4.078 21 N -0.971 5.971 22 Si 0.973 3.027 23 H -0.263 1.263 24 H -0.296 1.296 25 H -0.295 1.295 26 C 0.128 3.872 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.035 0.965 41 H 0.026 0.974 42 H 0.032 0.968 43 H 0.373 0.627 44 H 0.249 0.751 45 H 0.051 0.949 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.115 21.961 -4.323 25.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.055 4.055 3 C -0.178 4.178 4 C -0.064 4.064 5 F -0.108 7.108 6 C 0.345 3.655 7 O -0.442 6.442 8 N -0.340 5.340 9 C -0.028 4.028 10 C -0.109 4.109 11 H 0.134 0.866 12 C -0.142 4.142 13 C -0.152 4.152 14 C -0.141 4.141 15 C -0.070 4.070 16 C 0.046 3.954 17 N -0.386 5.386 18 C -0.371 4.371 19 H 0.097 0.903 20 C -0.270 4.270 21 N -0.622 5.622 22 Si 0.802 3.198 23 H -0.187 1.187 24 H -0.224 1.224 25 H -0.222 1.222 26 C 0.005 3.995 27 H 0.091 0.909 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.131 0.869 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.054 0.946 41 H 0.044 0.956 42 H 0.050 0.950 43 H 0.204 0.796 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.610 21.883 -4.142 25.594 hybrid contribution -0.898 -1.425 0.539 1.768 sum 11.712 20.458 -3.603 23.847 Atomic orbital electron populations 1.20923 0.89170 1.03336 1.03121 1.23105 0.98047 0.94426 0.89904 1.21048 1.00149 0.91990 1.04623 1.19035 0.77498 0.93342 1.16547 1.91370 1.28641 1.96635 1.94204 1.18326 0.86483 0.83161 0.77548 1.90826 1.15243 1.86697 1.51400 1.48930 1.11548 1.04768 1.68778 1.23080 0.79866 1.00126 0.99776 1.22750 0.96773 0.95339 0.96019 0.86551 1.22358 0.95226 1.01815 0.94783 1.22778 0.96582 0.95800 1.00021 1.22667 0.97520 0.98360 0.95597 1.22135 0.96145 0.94078 0.94630 1.20765 0.87893 0.89489 0.97257 1.42570 1.03821 1.09573 1.82587 1.19686 0.92728 0.88376 1.36354 0.90324 1.25570 0.95174 1.02403 1.03844 1.69842 0.97099 1.37384 1.57899 0.85077 0.77779 0.80168 0.76760 1.18745 1.22358 1.22214 1.22205 0.97868 0.80737 0.98666 0.90948 0.88786 0.91762 0.88247 0.88267 0.90541 0.86886 0.90032 0.89685 0.89870 0.93419 0.90709 0.91790 0.94596 0.95631 0.95034 0.79559 0.94189 0.93075 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.21 8.34 71.24 0.59 -1.61 16 2 C -0.05 -0.98 6.11 -17.60 -0.11 -1.09 16 3 C -0.12 -1.34 9.73 71.23 0.69 -0.64 16 4 C -0.04 -1.00 7.25 23.50 0.17 -0.83 16 5 F -0.13 -2.70 13.23 44.97 0.59 -2.11 16 6 C 0.55 17.37 7.75 86.63 0.67 18.04 16 7 O -0.56 -21.16 13.50 -4.05 -0.05 -21.21 16 8 N -0.61 -18.34 2.53 -812.45 -2.05 -20.39 16 9 C 0.09 2.10 5.98 86.52 0.52 2.62 16 10 C -0.09 -2.05 3.62 -9.29 -0.03 -2.08 16 11 H 0.12 2.26 7.88 -2.39 -0.02 2.24 16 12 C -0.10 -2.08 6.28 31.62 0.20 -1.88 16 13 C -0.11 -2.93 6.57 32.68 0.21 -2.71 16 14 C -0.10 -3.46 5.50 32.44 0.18 -3.28 16 15 C -0.07 -2.21 0.67 -50.69 -0.03 -2.24 16 16 C 0.17 6.72 5.10 86.38 0.44 7.16 16 17 N -0.74 -37.94 5.23 -343.45 -1.80 -39.74 16 18 C -0.24 -13.44 9.99 84.03 0.84 -12.60 16 19 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 20 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 21 N -0.97 -61.13 13.06 21.65 0.28 -60.85 16 22 Si 0.97 46.92 29.55 68.60 2.03 48.95 16 23 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 25 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 26 C 0.13 4.63 5.51 86.51 0.48 5.10 16 27 H 0.07 1.81 6.94 -2.39 -0.02 1.79 16 28 H 0.09 1.24 7.96 -2.39 -0.02 1.22 16 29 H 0.06 1.54 7.56 -2.39 -0.02 1.52 16 30 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.10 0.72 8.07 -2.39 -0.02 0.70 16 32 H 0.08 0.85 7.63 -2.39 -0.02 0.83 16 33 H 0.11 2.17 4.87 -2.39 -0.01 2.15 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.08 1.38 7.45 -2.39 -0.02 1.36 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.05 1.34 7.66 -2.39 -0.02 1.32 16 38 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.06 2.24 7.96 -2.39 -0.02 2.22 16 40 H 0.04 1.40 7.42 -2.39 -0.02 1.38 16 41 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.37 20.72 7.06 -92.70 -0.65 20.07 16 44 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 45 H 0.05 2.19 7.15 -2.39 -0.02 2.18 16 46 H 0.06 2.33 7.95 -2.39 -0.02 2.31 16 Total: -1.00 -70.68 360.88 4.61 -66.07 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.33 Total: 29.44 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 5.29 Total: -0.16 kcal Atomic # 7 Polarization: -117.41 SS G_CDS: -3.57 Total: -120.98 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.05 Total: -21.21 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.59 Total: -2.11 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -70.68 4.61 -66.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112301099.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.083 kcal (2) G-P(sol) polarization free energy of solvation -70.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds