Wall clock time and date at job start Fri Apr 10 2020 22:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 120.00346 * 2 1 4 4 H 1.48503 * 109.46697 * 269.99933 * 3 2 1 5 5 H 1.48499 * 109.46785 * 29.99305 * 3 2 1 6 6 H 1.48495 * 109.47371 * 149.99723 * 3 2 1 7 7 C 1.38814 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00066 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00094 * 180.02562 * 7 2 1 10 10 C 1.46503 * 120.00035 * 174.12120 * 9 7 2 11 11 C 1.53002 * 109.46890 * 63.04969 * 10 9 7 12 12 N 1.46496 * 109.47133 * 54.67043 * 11 10 9 13 13 C 1.34779 * 119.99657 * 176.20840 * 12 11 10 14 14 O 1.21288 * 119.99954 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99820 * 179.97438 * 13 12 11 16 16 O 1.42903 * 109.46813 * 180.02562 * 15 13 12 17 17 C 1.42904 * 113.99773 * 180.02562 * 16 15 13 18 18 C 1.53007 * 109.47010 * 180.02562 * 17 16 15 19 19 C 1.52998 * 117.49392 * 243.62209 * 18 17 16 20 20 C 1.52996 * 117.49500 * 175.00223 * 18 17 16 21 21 C 1.52996 * 109.46957 * 303.04596 * 10 9 7 22 22 C 1.52994 * 109.47429 * 299.99985 * 21 10 9 23 23 C 1.52996 * 109.47325 * 300.00163 * 22 21 10 24 24 C 1.53003 * 109.47148 * 59.99844 * 23 22 21 25 25 C 1.52996 * 109.46983 * 183.04931 * 10 9 7 26 26 H 0.97001 * 119.99809 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00139 * 353.84162 * 9 7 2 28 28 H 1.09004 * 109.46886 * 174.67062 * 11 10 9 29 29 H 1.09005 * 109.46787 * 294.66351 * 11 10 9 30 30 H 0.97000 * 120.00261 * 356.20511 * 12 11 10 31 31 H 1.08997 * 109.47240 * 300.00007 * 15 13 12 32 32 H 1.08999 * 109.47326 * 60.00277 * 15 13 12 33 33 H 1.09001 * 109.46956 * 299.99648 * 17 16 15 34 34 H 1.09001 * 109.46911 * 60.00136 * 17 16 15 35 35 H 1.08993 * 115.54643 * 29.32947 * 18 17 16 36 36 H 1.09000 * 117.50455 * 359.97438 * 19 18 17 37 37 H 1.09001 * 117.49898 * 145.02460 * 19 18 17 38 38 H 1.09000 * 117.49456 * 214.97589 * 20 18 17 39 39 H 1.08996 * 117.50113 * 359.97438 * 20 18 17 40 40 H 1.09004 * 109.47133 * 60.00258 * 21 10 9 41 41 H 1.09002 * 109.47174 * 179.97438 * 21 10 9 42 42 H 1.08998 * 109.47460 * 179.97438 * 22 21 10 43 43 H 1.09005 * 109.46893 * 60.00450 * 22 21 10 44 44 H 1.08997 * 109.47074 * 299.99908 * 23 22 21 45 45 H 1.08997 * 109.47439 * 180.02562 * 23 22 21 46 46 H 1.08998 * 109.47042 * 180.02562 * 24 23 22 47 47 H 1.08997 * 109.47081 * 60.00068 * 24 23 22 48 48 H 1.09005 * 109.47369 * 180.02562 * 25 10 9 49 49 H 1.09003 * 109.47107 * 300.00102 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2022 0.0011 10 6 4.1120 -2.4643 0.1316 11 6 3.8012 -3.3607 -1.0687 12 7 4.0912 -2.6354 -2.3080 13 6 3.9646 -3.2562 -3.4976 14 8 3.6109 -4.4155 -3.5420 15 6 4.2624 -2.5099 -4.7725 16 8 4.0560 -3.3757 -5.8905 17 6 4.3129 -2.7626 -7.1555 18 6 4.0605 -3.7758 -8.2739 19 6 5.2544 -4.1858 -9.1383 20 6 4.1677 -3.2771 -9.7163 21 6 3.6852 -3.1707 1.4199 22 6 3.9960 -2.2743 2.6201 23 6 5.4984 -1.9893 2.6684 24 6 5.9252 -1.2828 1.3801 25 6 5.6144 -2.1794 0.1799 26 1 -0.4850 0.8401 -0.0004 27 1 3.8646 -0.3671 -0.0890 28 1 4.4172 -4.2588 -1.0206 29 1 2.7480 -3.6412 -1.0497 30 1 4.3744 -1.7083 -2.2725 31 1 3.5989 -1.6488 -4.8529 32 1 5.2982 -2.1707 -4.7615 33 1 3.6510 -1.9063 -7.2854 34 1 5.3500 -2.4295 -7.1939 35 1 3.3098 -4.5361 -8.0587 36 1 6.2197 -3.7335 -8.9106 37 1 5.2895 -5.2163 -9.4920 38 1 3.4878 -3.7097 -10.4503 39 1 4.4177 -2.2272 -9.8686 40 1 2.6148 -3.3737 1.3855 41 1 4.2298 -4.1099 1.5168 42 1 3.6915 -2.7773 3.5379 43 1 3.4510 -1.3353 2.5230 44 1 6.0433 -2.9283 2.7655 45 1 5.7199 -1.3510 3.5237 46 1 6.9956 -1.0802 1.4144 47 1 5.3803 -0.3439 1.2830 48 1 6.1594 -3.1184 0.2766 49 1 5.9184 -1.6760 -0.7379 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115420768.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:34 Heat of formation + Delta-G solvation = -57.714597 kcal Electronic energy + Delta-G solvation = -26643.525042 eV Core-core repulsion = 22992.279902 eV Total energy + Delta-G solvation = -3651.245140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.69970 -38.80855 -38.04140 -36.41236 -34.49215 -33.31415 -31.41250 -30.36237 -29.58583 -28.61278 -26.52209 -24.66952 -23.49955 -22.63209 -22.22471 -21.01321 -20.59681 -19.96877 -18.33355 -17.79937 -17.19568 -16.77065 -16.30422 -15.66731 -15.16148 -14.95884 -14.58583 -14.49210 -14.35552 -14.08124 -13.67697 -13.50657 -13.30095 -12.72325 -12.62013 -12.36849 -12.24991 -11.99530 -11.94862 -11.78414 -11.67150 -11.27064 -11.23718 -11.02137 -10.85864 -10.69814 -10.63213 -10.45623 -10.31438 -10.07406 -9.89420 -9.67840 -9.63956 -9.43462 -9.35247 -8.92640 -8.48478 -7.34307 -5.80397 -3.17759 2.96600 3.04659 3.29030 3.31408 3.39964 3.56254 4.06341 4.52688 4.59739 4.64966 4.88869 5.00474 5.00876 5.08665 5.11514 5.14163 5.18050 5.27038 5.32492 5.33436 5.37223 5.46952 5.50520 5.61723 5.62604 5.70816 5.84146 5.85524 5.90838 5.98961 5.99674 6.05105 6.11713 6.17578 6.32219 6.44112 6.49957 6.59185 6.69960 6.71738 6.91801 6.96724 7.06172 7.09740 7.94429 7.98673 8.38027 8.65500 9.14949 9.86433 10.05681 11.37642 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014080 B = 0.003435 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.226171 B = 8149.354937 C = 9208.841366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.876 3.124 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.236 4.236 8 H 0.091 0.909 9 N -0.736 5.736 10 C 0.198 3.802 11 C 0.119 3.881 12 N -0.702 5.702 13 C 0.511 3.489 14 O -0.533 6.533 15 C 0.044 3.956 16 O -0.359 6.359 17 C 0.091 3.909 18 C -0.151 4.151 19 C -0.178 4.178 20 C -0.175 4.175 21 C -0.114 4.114 22 C -0.110 4.110 23 C -0.114 4.114 24 C -0.117 4.117 25 C -0.117 4.117 26 H 0.259 0.741 27 H 0.360 0.640 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.399 0.601 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.116 0.884 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.079 0.921 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.051 0.949 47 H 0.066 0.934 48 H 0.064 0.936 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.305 -3.015 -8.880 17.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.187 4.187 3 Si 0.707 3.293 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.365 4.365 8 H 0.109 0.891 9 N -0.379 5.379 10 C 0.106 3.894 11 C -0.007 4.007 12 N -0.354 5.354 13 C 0.295 3.705 14 O -0.409 6.409 15 C -0.036 4.036 16 O -0.277 6.277 17 C 0.014 3.986 18 C -0.169 4.169 19 C -0.215 4.215 20 C -0.212 4.212 21 C -0.154 4.154 22 C -0.147 4.147 23 C -0.152 4.152 24 C -0.154 4.154 25 C -0.155 4.155 26 H 0.069 0.931 27 H 0.194 0.806 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.234 0.766 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.134 0.866 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.098 0.902 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.085 0.915 48 H 0.083 0.917 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.731 -4.101 -8.861 16.849 hybrid contribution 0.629 2.119 -0.055 2.211 sum 14.360 -1.982 -8.916 17.019 Atomic orbital electron populations 1.69690 1.05110 1.25671 1.57337 1.24652 0.95067 0.96873 1.02147 0.86699 0.79436 0.85617 0.77586 1.21385 1.21954 1.20133 1.18938 0.80373 0.94524 1.42697 0.89084 1.42813 1.04008 1.02276 1.88849 1.19782 0.90113 0.87442 0.92047 1.21854 1.01321 0.94143 0.83405 1.45613 1.68552 1.15954 1.05245 1.20052 0.78399 0.87427 0.84619 1.90694 1.46079 1.17038 1.87137 1.22216 1.01468 0.93529 0.86349 1.88005 1.89803 1.37277 1.12656 1.22055 0.99260 0.94535 0.82757 1.22118 1.02138 1.02184 0.90458 1.23065 0.93908 1.00476 1.04021 1.22974 1.02640 1.00076 0.95478 1.21763 1.01921 0.96898 0.94817 1.21368 0.95003 1.01487 0.96860 1.21495 0.97249 0.99518 0.96918 1.21494 0.99598 0.99452 0.94890 1.21747 0.96055 0.99843 0.97896 0.93120 0.80597 0.92575 0.91224 0.76589 0.90143 0.90751 0.92642 0.93171 0.86580 0.88732 0.88605 0.88393 0.88688 0.91079 0.93397 0.93357 0.90245 0.92877 0.92972 0.93026 0.91530 0.91694 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.99 13.97 55.49 0.78 -27.22 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 20.50 27.68 -169.99 -4.70 15.79 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -5.97 6.61 56.52 0.37 -5.59 16 7 C -0.24 -5.93 9.18 -15.06 -0.14 -6.07 16 8 H 0.09 2.56 7.00 -52.48 -0.37 2.19 16 9 N -0.74 -14.80 3.19 -47.23 -0.15 -14.95 16 10 C 0.20 3.31 0.41 -131.82 -0.05 3.26 16 11 C 0.12 2.09 4.37 -4.04 -0.02 2.07 16 12 N -0.70 -11.59 5.09 -60.29 -0.31 -11.90 16 13 C 0.51 8.99 7.91 -10.98 -0.09 8.90 16 14 O -0.53 -11.63 16.50 -14.36 -0.24 -11.86 16 15 C 0.04 0.61 6.42 36.01 0.23 0.84 16 16 O -0.36 -5.48 9.88 -55.14 -0.54 -6.02 16 17 C 0.09 1.01 6.22 37.16 0.23 1.24 16 18 C -0.15 -1.57 6.06 -90.62 -0.55 -2.12 16 19 C -0.18 -1.52 10.18 -26.73 -0.27 -1.79 16 20 C -0.17 -1.40 10.25 -26.73 -0.27 -1.67 16 21 C -0.11 -1.91 4.51 -26.74 -0.12 -2.03 16 22 C -0.11 -1.76 5.76 -26.74 -0.15 -1.92 16 23 C -0.11 -1.55 5.92 -26.73 -0.16 -1.71 16 24 C -0.12 -1.60 5.75 -26.73 -0.15 -1.75 16 25 C -0.12 -1.62 4.64 -26.73 -0.12 -1.75 16 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.36 7.17 4.58 -40.82 -0.19 6.99 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 1.46 7.51 -51.93 -0.39 1.07 16 30 H 0.40 5.98 7.40 -40.82 -0.30 5.68 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.47 7.88 -51.93 -0.41 0.06 16 35 H 0.12 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.09 0.74 8.03 -51.93 -0.42 0.32 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 1.36 7.23 -51.93 -0.38 0.99 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 1.52 7.60 -51.93 -0.39 1.13 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.07 1.04 6.93 -51.93 -0.36 0.68 16 48 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.06 0.74 7.29 -51.93 -0.38 0.36 16 LS Contribution 383.95 15.07 5.79 5.79 Total: -1.00 -31.95 383.95 -9.78 -41.73 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -8.66 Total: 13.00 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -1.74 Total: -4.35 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.32 Total: -54.07 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.78 Total: -17.89 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.70 Total: 15.79 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.95 -9.78 -41.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115420768.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.988 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds