Wall clock time and date at job start Fri Apr 10 2020 22:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 120.00346 * 2 1 4 4 H 1.48503 * 109.46697 * 269.99933 * 3 2 1 5 5 H 1.48499 * 109.46785 * 29.99305 * 3 2 1 6 6 H 1.48495 * 109.47371 * 149.99723 * 3 2 1 7 7 C 1.38814 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00066 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00094 * 180.02562 * 7 2 1 10 10 C 1.46503 * 120.00035 * 174.12120 * 9 7 2 11 11 C 1.53002 * 109.46890 * 63.04969 * 10 9 7 12 12 N 1.46496 * 109.47133 * 54.67043 * 11 10 9 13 13 C 1.34779 * 119.99657 * 176.20840 * 12 11 10 14 14 O 1.21288 * 119.99954 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99820 * 179.97438 * 13 12 11 16 16 O 1.42903 * 109.46813 * 180.02562 * 15 13 12 17 17 C 1.42904 * 113.99773 * 180.02562 * 16 15 13 18 18 C 1.53007 * 109.47010 * 180.02562 * 17 16 15 19 19 C 1.52998 * 117.49392 * 243.62209 * 18 17 16 20 20 C 1.52996 * 117.49500 * 175.00223 * 18 17 16 21 21 C 1.52996 * 109.46957 * 303.04596 * 10 9 7 22 22 C 1.52994 * 109.47429 * 299.99985 * 21 10 9 23 23 C 1.52996 * 109.47325 * 300.00163 * 22 21 10 24 24 C 1.53003 * 109.47148 * 59.99844 * 23 22 21 25 25 C 1.52996 * 109.46983 * 183.04931 * 10 9 7 26 26 H 0.97001 * 119.99809 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00139 * 353.84162 * 9 7 2 28 28 H 1.09004 * 109.46886 * 174.67062 * 11 10 9 29 29 H 1.09005 * 109.46787 * 294.66351 * 11 10 9 30 30 H 0.97000 * 120.00261 * 356.20511 * 12 11 10 31 31 H 1.08997 * 109.47240 * 300.00007 * 15 13 12 32 32 H 1.08999 * 109.47326 * 60.00277 * 15 13 12 33 33 H 1.09001 * 109.46956 * 299.99648 * 17 16 15 34 34 H 1.09001 * 109.46911 * 60.00136 * 17 16 15 35 35 H 1.08993 * 115.54643 * 29.32947 * 18 17 16 36 36 H 1.09000 * 117.50455 * 359.97438 * 19 18 17 37 37 H 1.09001 * 117.49898 * 145.02460 * 19 18 17 38 38 H 1.09000 * 117.49456 * 214.97589 * 20 18 17 39 39 H 1.08996 * 117.50113 * 359.97438 * 20 18 17 40 40 H 1.09004 * 109.47133 * 60.00258 * 21 10 9 41 41 H 1.09002 * 109.47174 * 179.97438 * 21 10 9 42 42 H 1.08998 * 109.47460 * 179.97438 * 22 21 10 43 43 H 1.09005 * 109.46893 * 60.00450 * 22 21 10 44 44 H 1.08997 * 109.47074 * 299.99908 * 23 22 21 45 45 H 1.08997 * 109.47439 * 180.02562 * 23 22 21 46 46 H 1.08998 * 109.47042 * 180.02562 * 24 23 22 47 47 H 1.08997 * 109.47081 * 60.00068 * 24 23 22 48 48 H 1.09005 * 109.47369 * 180.02562 * 25 10 9 49 49 H 1.09003 * 109.47107 * 300.00102 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2022 0.0011 10 6 4.1120 -2.4643 0.1316 11 6 3.8012 -3.3607 -1.0687 12 7 4.0912 -2.6354 -2.3080 13 6 3.9646 -3.2562 -3.4976 14 8 3.6109 -4.4155 -3.5420 15 6 4.2624 -2.5099 -4.7725 16 8 4.0560 -3.3757 -5.8905 17 6 4.3129 -2.7626 -7.1555 18 6 4.0605 -3.7758 -8.2739 19 6 5.2544 -4.1858 -9.1383 20 6 4.1677 -3.2771 -9.7163 21 6 3.6852 -3.1707 1.4199 22 6 3.9960 -2.2743 2.6201 23 6 5.4984 -1.9893 2.6684 24 6 5.9252 -1.2828 1.3801 25 6 5.6144 -2.1794 0.1799 26 1 -0.4850 0.8401 -0.0004 27 1 3.8646 -0.3671 -0.0890 28 1 4.4172 -4.2588 -1.0206 29 1 2.7480 -3.6412 -1.0497 30 1 4.3744 -1.7083 -2.2725 31 1 3.5989 -1.6488 -4.8529 32 1 5.2982 -2.1707 -4.7615 33 1 3.6510 -1.9063 -7.2854 34 1 5.3500 -2.4295 -7.1939 35 1 3.3098 -4.5361 -8.0587 36 1 6.2197 -3.7335 -8.9106 37 1 5.2895 -5.2163 -9.4920 38 1 3.4878 -3.7097 -10.4503 39 1 4.4177 -2.2272 -9.8686 40 1 2.6148 -3.3737 1.3855 41 1 4.2298 -4.1099 1.5168 42 1 3.6915 -2.7773 3.5379 43 1 3.4510 -1.3353 2.5230 44 1 6.0433 -2.9283 2.7655 45 1 5.7199 -1.3510 3.5237 46 1 6.9956 -1.0802 1.4144 47 1 5.3803 -0.3439 1.2830 48 1 6.1594 -3.1184 0.2766 49 1 5.9184 -1.6760 -0.7379 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115420768.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:33 Heat of formation + Delta-G solvation = -77.931690 kcal Electronic energy + Delta-G solvation = -26644.401721 eV Core-core repulsion = 22992.279902 eV Total energy + Delta-G solvation = -3652.121819 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.08469 -40.05385 -39.06349 -37.31852 -35.91708 -35.09364 -33.13438 -31.59462 -31.15665 -29.75966 -27.53385 -25.91490 -25.40583 -23.48684 -23.25311 -21.99151 -21.72850 -21.30878 -19.78981 -19.69690 -18.33846 -17.94015 -17.36652 -16.81433 -16.55667 -16.29436 -16.09071 -15.68228 -15.64182 -15.20135 -14.94411 -14.89450 -14.56550 -14.28771 -13.98105 -13.74646 -13.44510 -13.31726 -13.26676 -12.93732 -12.80832 -12.66576 -12.38836 -12.36362 -12.09154 -12.08468 -11.89190 -11.67523 -11.39407 -11.32307 -11.27132 -11.15804 -10.93037 -10.74129 -10.69213 -10.52430 -9.95943 -9.24485 -7.92345 -5.26266 1.40336 1.44866 1.52421 1.61709 1.89494 2.55014 2.78492 3.06973 3.37720 3.55255 3.77954 3.88835 3.91372 3.95316 3.96551 4.07085 4.13179 4.18190 4.26612 4.33170 4.36652 4.44954 4.52190 4.63216 4.69715 4.72143 4.72616 4.77202 4.77878 4.88069 4.94665 5.00548 5.04951 5.16850 5.21071 5.22784 5.24189 5.41704 5.43196 5.48938 5.53915 5.62837 5.73996 5.90774 6.09402 6.30704 6.64430 7.17889 7.29336 7.90480 8.12275 9.29771 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014080 B = 0.003435 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.226171 B = 8149.354937 C = 9208.841366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.990 5.990 2 C -0.066 4.066 3 Si 0.947 3.053 4 H -0.277 1.277 5 H -0.311 1.311 6 H -0.243 1.243 7 C -0.199 4.199 8 H 0.047 0.953 9 N -0.729 5.729 10 C 0.196 3.804 11 C 0.125 3.875 12 N -0.694 5.694 13 C 0.503 3.497 14 O -0.584 6.584 15 C 0.050 3.950 16 O -0.395 6.395 17 C 0.088 3.912 18 C -0.180 4.180 19 C -0.174 4.174 20 C -0.159 4.159 21 C -0.115 4.115 22 C -0.108 4.108 23 C -0.109 4.109 24 C -0.116 4.116 25 C -0.111 4.111 26 H 0.252 0.748 27 H 0.368 0.632 28 H 0.069 0.931 29 H 0.023 0.977 30 H 0.410 0.590 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.030 0.970 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.042 0.958 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.083 0.917 47 H 0.046 0.954 48 H 0.087 0.913 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.729 -1.720 -9.585 21.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.642 5.642 2 C -0.256 4.256 3 Si 0.775 3.225 4 H -0.203 1.203 5 H -0.239 1.239 6 H -0.167 1.167 7 C -0.331 4.331 8 H 0.065 0.935 9 N -0.373 5.373 10 C 0.106 3.894 11 C -0.002 4.002 12 N -0.346 5.346 13 C 0.290 3.710 14 O -0.464 6.464 15 C -0.030 4.030 16 O -0.315 6.315 17 C 0.012 3.988 18 C -0.198 4.198 19 C -0.211 4.211 20 C -0.195 4.195 21 C -0.154 4.154 22 C -0.146 4.146 23 C -0.147 4.147 24 C -0.153 4.153 25 C -0.149 4.149 26 H 0.061 0.939 27 H 0.202 0.798 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.247 0.753 31 H 0.112 0.888 32 H 0.134 0.866 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.124 0.876 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.101 0.899 47 H 0.065 0.935 48 H 0.105 0.895 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 18.237 -2.804 -9.569 20.785 hybrid contribution -0.786 1.539 0.165 1.736 sum 17.450 -1.266 -9.404 19.863 Atomic orbital electron populations 1.69909 1.07471 1.26133 1.60675 1.25425 0.95782 1.00950 1.03453 0.85540 0.78949 0.79972 0.78039 1.20305 1.23897 1.16732 1.18716 0.82561 0.92525 1.39262 0.93468 1.42694 1.02060 1.04065 1.88498 1.19989 0.92468 0.85602 0.91317 1.21697 0.98779 0.95184 0.84508 1.45563 1.67914 1.16293 1.04796 1.20886 0.77090 0.87049 0.86004 1.90667 1.48382 1.19459 1.87916 1.22260 1.04121 0.92598 0.83981 1.87969 1.90398 1.38870 1.14228 1.22261 1.00737 0.94692 0.81096 1.22118 1.03193 1.02658 0.91845 1.23167 0.93953 1.01030 1.02928 1.23077 1.02002 1.00884 0.93573 1.21756 0.99771 0.98494 0.95424 1.21323 0.97201 0.99386 0.96646 1.21477 0.94685 1.00920 0.97606 1.21505 1.01262 0.98205 0.94336 1.21739 0.92665 1.01396 0.99115 0.93915 0.79751 0.91292 0.95868 0.75333 0.88806 0.86616 0.91873 0.90928 0.88943 0.87618 0.88336 0.87672 0.87197 0.95137 0.90743 0.92657 0.93901 0.90703 0.91847 0.89878 0.93518 0.89462 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.59 13.97 21.65 0.30 -62.29 16 2 C -0.07 -3.67 5.50 84.86 0.47 -3.21 16 3 Si 0.95 42.54 27.68 68.60 1.90 44.43 16 4 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.31 -14.91 7.11 99.48 0.71 -14.20 16 6 H -0.24 -9.51 6.61 99.48 0.66 -8.85 16 7 C -0.20 -10.42 9.18 84.03 0.77 -9.65 16 8 H 0.05 2.87 7.00 -2.91 -0.02 2.85 16 9 N -0.73 -28.95 3.19 -303.34 -0.97 -29.92 16 10 C 0.20 6.37 0.41 3.60 0.00 6.37 16 11 C 0.12 4.43 4.37 86.38 0.38 4.80 16 12 N -0.69 -22.28 5.09 -463.04 -2.36 -24.64 16 13 C 0.50 17.52 7.91 87.66 0.69 18.22 16 14 O -0.58 -26.18 16.50 15.98 0.26 -25.91 16 15 C 0.05 1.27 6.42 71.24 0.46 1.73 16 16 O -0.40 -11.78 9.88 -129.94 -1.28 -13.06 16 17 C 0.09 1.82 6.22 71.98 0.45 2.26 16 18 C -0.18 -3.61 6.06 -10.79 -0.07 -3.68 16 19 C -0.17 -2.66 10.18 30.59 0.31 -2.35 16 20 C -0.16 -2.22 10.25 30.59 0.31 -1.90 16 21 C -0.11 -3.82 4.51 30.59 0.14 -3.68 16 22 C -0.11 -3.35 5.76 30.59 0.18 -3.17 16 23 C -0.11 -2.56 5.92 30.59 0.18 -2.38 16 24 C -0.12 -2.64 5.75 30.59 0.18 -2.46 16 25 C -0.11 -2.63 4.64 30.59 0.14 -2.48 16 26 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 27 H 0.37 13.79 4.58 -92.71 -0.42 13.36 16 28 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 29 H 0.02 1.03 7.51 -2.38 -0.02 1.01 16 30 H 0.41 11.33 7.40 -92.71 -0.69 10.65 16 31 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.14 7.88 -2.39 -0.02 1.13 16 35 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.11 1.37 8.03 -2.39 -0.02 1.35 16 37 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.03 1.23 7.23 -2.39 -0.02 1.22 16 41 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.04 1.63 7.60 -2.38 -0.02 1.62 16 44 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.05 1.27 6.93 -2.39 -0.02 1.25 16 48 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 49 H 0.07 1.54 7.29 -2.39 -0.02 1.52 16 Total: -1.00 -75.63 383.95 2.22 -73.41 By element: Atomic # 1 Polarization: 39.78 SS G_CDS: -0.23 Total: 39.56 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 4.59 Total: -1.58 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -3.02 Total: -116.84 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -1.02 Total: -38.97 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.90 Total: 44.43 kcal Total: -75.63 2.22 -73.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115420768.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.526 kcal (2) G-P(sol) polarization free energy of solvation -75.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds