Wall clock time and date at job start Fri Apr 10 2020 22:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99888 * 2 1 4 4 H 1.48505 * 109.46908 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47278 * 299.99988 * 3 2 1 6 6 H 1.48496 * 109.47420 * 60.00100 * 3 2 1 7 7 C 1.38809 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99853 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00331 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00578 * 174.07276 * 9 7 2 11 11 C 1.53007 * 109.47197 * 300.08139 * 10 9 7 12 12 N 1.46496 * 109.46951 * 305.24775 * 11 10 9 13 13 C 1.34772 * 120.00258 * 175.98584 * 12 11 10 14 14 O 1.21280 * 119.99753 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00367 * 179.97438 * 13 12 11 16 16 C 1.52996 * 109.47288 * 179.97438 * 15 13 12 17 17 H 1.09004 * 110.67446 * 303.48234 * 16 15 13 18 18 C 1.55002 * 110.61961 * 180.52329 * 16 15 13 19 19 C 1.54808 * 102.09077 * 204.46891 * 18 16 15 20 20 C 1.54099 * 104.19034 * 20.88297 * 19 18 16 21 21 O 1.43747 * 107.29330 * 2.02305 * 20 19 18 22 22 C 1.52999 * 109.46759 * 60.07553 * 10 9 7 23 23 C 1.53004 * 109.47148 * 60.00730 * 22 10 9 24 24 C 1.52992 * 109.47081 * 59.99670 * 23 22 10 25 25 C 1.52999 * 109.47399 * 300.00176 * 24 23 22 26 26 C 1.52992 * 109.47651 * 180.02562 * 10 9 7 27 27 H 0.97001 * 119.99945 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99993 * 354.07628 * 9 7 2 29 29 H 1.08992 * 109.47406 * 185.24390 * 11 10 9 30 30 H 1.09002 * 109.47302 * 65.24258 * 11 10 9 31 31 H 0.97008 * 120.00029 * 355.98074 * 12 11 10 32 32 H 1.08998 * 109.47219 * 59.99131 * 15 13 12 33 33 H 1.09003 * 109.46894 * 299.99540 * 15 13 12 34 34 H 1.09002 * 110.90756 * 86.27078 * 18 16 15 35 35 H 1.09001 * 110.93373 * 322.68160 * 18 16 15 36 36 H 1.08997 * 110.49447 * 262.19740 * 19 18 16 37 37 H 1.09013 * 110.48322 * 139.55315 * 19 18 16 38 38 H 1.08998 * 109.87776 * 242.60358 * 20 19 18 39 39 H 1.08995 * 109.87970 * 121.44943 * 20 19 18 40 40 H 1.09004 * 109.47124 * 180.02562 * 22 10 9 41 41 H 1.09002 * 109.47383 * 300.00109 * 22 10 9 42 42 H 1.09004 * 109.46690 * 299.99754 * 23 22 10 43 43 H 1.08996 * 109.47019 * 180.02562 * 23 22 10 44 44 H 1.09008 * 109.46798 * 180.02562 * 24 23 22 45 45 H 1.08999 * 109.47565 * 60.00065 * 24 23 22 46 46 H 1.09004 * 109.47124 * 300.00377 * 25 24 23 47 47 H 1.09002 * 109.47383 * 180.02562 * 25 24 23 48 48 H 1.08996 * 109.47473 * 59.99838 * 26 10 9 49 49 H 1.09004 * 109.47290 * 180.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0520 -3.6534 -0.1321 11 6 2.8174 -3.6667 -1.4569 12 7 1.8895 -3.4032 -2.5595 13 6 2.3551 -3.2866 -3.8189 14 8 3.5423 -3.3994 -4.0393 15 6 1.4005 -3.0160 -4.9532 16 6 2.1806 -2.9293 -6.2665 17 1 2.9567 -2.1666 -6.2035 18 6 1.2243 -2.6382 -7.4511 19 6 2.0156 -3.2070 -8.6540 20 6 3.0098 -4.1976 -8.0177 21 8 2.7535 -4.2110 -6.6033 22 6 3.0387 -3.7979 1.0282 23 6 2.2735 -3.7846 2.3531 24 6 1.2805 -4.9482 2.3801 25 6 0.2938 -4.8036 1.2197 26 6 1.0591 -4.8170 -0.1038 27 1 -0.4850 0.8401 0.0004 28 1 0.3595 -2.3903 0.0865 29 1 3.2819 -4.6425 -1.5984 30 1 3.5884 -2.8964 -1.4390 31 1 0.9399 -3.3126 -2.3832 32 1 0.8829 -2.0734 -4.7755 33 1 0.6720 -3.8245 -5.0156 34 1 1.0609 -1.5665 -7.5648 35 1 0.2773 -3.1630 -7.3253 36 1 2.5495 -2.4097 -9.1709 37 1 1.3461 -3.7262 -9.3399 38 1 4.0320 -3.8692 -8.2060 39 1 2.8563 -5.1941 -8.4316 40 1 3.5796 -4.7391 0.9302 41 1 3.7463 -2.9689 1.0090 42 1 1.7329 -2.8432 2.4510 43 1 2.9765 -3.8871 3.1797 44 1 0.7350 -4.9384 3.3238 45 1 1.8210 -5.8896 2.2822 46 1 -0.2469 -3.8622 1.3176 47 1 -0.4140 -5.6324 1.2392 48 1 0.3555 -4.7145 -0.9298 49 1 1.5998 -5.7584 -0.2012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115422258.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:41 Heat of formation + Delta-G solvation = -95.070482 kcal Electronic energy + Delta-G solvation = -27283.868065 eV Core-core repulsion = 23631.003052 eV Total energy + Delta-G solvation = -3652.865013 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.79177 -39.07310 -38.04907 -34.34038 -33.18881 -32.31910 -31.70809 -30.96498 -30.23964 -28.57194 -26.90478 -24.82182 -23.76610 -22.24416 -21.89845 -21.21236 -20.40277 -19.64691 -18.30150 -17.17409 -16.88346 -16.26918 -15.94398 -15.43559 -15.09352 -14.89650 -14.47695 -14.22539 -13.98350 -13.65868 -13.58921 -13.43389 -12.98001 -12.77358 -12.37905 -12.32122 -11.89120 -11.80486 -11.75444 -11.67092 -11.52739 -11.22148 -11.13083 -11.03253 -10.88773 -10.76974 -10.75329 -10.55561 -10.15046 -10.06329 -9.76685 -9.60691 -9.55425 -9.27154 -9.24069 -8.87231 -8.26399 -6.98450 -5.79534 -3.07536 3.27171 3.41298 3.49420 3.50409 3.79718 3.92902 4.48166 4.57780 4.69068 4.85490 5.07843 5.19735 5.22205 5.23005 5.27126 5.28850 5.48552 5.52410 5.56073 5.63574 5.65799 5.69971 5.74585 5.77228 5.84030 5.87009 5.93053 5.98520 6.05299 6.11406 6.12678 6.17631 6.23849 6.33911 6.45844 6.55452 6.61612 6.79074 6.82954 6.85006 7.00265 7.00766 7.16537 7.22454 7.73719 8.22161 8.39000 8.89656 9.51749 10.05049 10.41790 11.42690 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012237 B = 0.004256 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.606918 B = 6576.856138 C = 8052.614081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.010 4.010 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.225 4.225 8 H 0.069 0.931 9 N -0.709 5.709 10 C 0.191 3.809 11 C 0.119 3.881 12 N -0.702 5.702 13 C 0.511 3.489 14 O -0.548 6.548 15 C -0.137 4.137 16 C 0.096 3.904 17 H 0.076 0.924 18 C -0.153 4.153 19 C -0.156 4.156 20 C 0.045 3.955 21 O -0.360 6.360 22 C -0.117 4.117 23 C -0.109 4.109 24 C -0.113 4.113 25 C -0.115 4.115 26 C -0.114 4.114 27 H 0.253 0.747 28 H 0.384 0.616 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.400 0.600 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.045 0.955 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.051 0.949 45 H 0.050 0.950 46 H 0.073 0.927 47 H 0.049 0.951 48 H 0.057 0.943 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.462 -9.531 -9.171 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.205 4.205 3 Si 0.730 3.270 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.356 4.356 8 H 0.087 0.913 9 N -0.351 5.351 10 C 0.099 3.901 11 C -0.008 4.008 12 N -0.352 5.352 13 C 0.296 3.704 14 O -0.426 6.426 15 C -0.177 4.177 16 C 0.038 3.962 17 H 0.094 0.906 18 C -0.191 4.191 19 C -0.194 4.194 20 C -0.032 4.032 21 O -0.279 6.279 22 C -0.157 4.157 23 C -0.147 4.147 24 C -0.150 4.150 25 C -0.153 4.153 26 C -0.152 4.152 27 H 0.063 0.937 28 H 0.219 0.781 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.236 0.764 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.099 0.901 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.091 0.909 47 H 0.068 0.932 48 H 0.076 0.924 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.548 -9.643 -9.179 13.324 hybrid contribution -0.308 1.334 -0.081 1.372 sum 0.240 -8.309 -9.260 12.444 Atomic orbital electron populations 1.69654 1.04922 1.25340 1.58219 1.24640 0.95368 0.97321 1.03205 0.86245 0.79032 0.84686 0.77040 1.20659 1.22097 1.22070 1.19130 0.90981 0.83805 1.41678 0.91322 1.42439 1.06156 0.99424 1.87103 1.19822 0.91574 0.87451 0.91237 1.21775 0.92716 0.99240 0.87022 1.45716 1.11699 1.71631 1.06140 1.20305 0.89213 0.76944 0.83893 1.90667 1.16882 1.50809 1.84246 1.21724 0.98622 1.04754 0.92575 1.22819 0.93878 0.86815 0.92659 0.90560 1.23212 0.99361 1.02061 0.94419 1.22930 0.98575 0.99391 0.98457 1.23099 0.98063 0.99619 0.82416 1.88992 1.83150 1.33977 1.21806 1.21831 0.98220 1.00086 0.95584 1.21370 0.97547 0.99541 0.96223 1.21477 0.97436 0.98372 0.97753 1.21455 0.97529 1.01762 0.94544 1.21669 0.98200 0.97887 0.97401 0.93750 0.78073 0.93477 0.91712 0.76436 0.87442 0.88597 0.90038 0.90313 0.90818 0.90677 0.92657 0.90276 0.93668 0.91875 0.90091 0.93750 0.93042 0.93162 0.90884 0.93241 0.92412 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.13 13.07 55.49 0.73 -25.41 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.90 21.95 29.55 -169.99 -5.02 16.92 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 7 C -0.22 -5.66 8.72 -15.06 -0.13 -5.79 16 8 H 0.07 1.78 6.75 -52.49 -0.35 1.42 16 9 N -0.71 -15.34 3.55 -47.24 -0.17 -15.50 16 10 C 0.19 3.42 0.40 -131.82 -0.05 3.36 16 11 C 0.12 2.23 4.32 -4.04 -0.02 2.21 16 12 N -0.70 -12.59 5.14 -60.30 -0.31 -12.90 16 13 C 0.51 9.40 7.74 -10.99 -0.09 9.31 16 14 O -0.55 -12.05 15.56 -5.83 -0.09 -12.14 16 15 C -0.14 -1.93 5.48 -27.89 -0.15 -2.08 16 16 C 0.10 1.33 2.79 -25.68 -0.07 1.26 16 17 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 18 C -0.15 -1.55 6.59 -24.72 -0.16 -1.71 16 19 C -0.16 -1.41 7.01 -25.20 -0.18 -1.59 16 20 C 0.05 0.51 7.70 37.73 0.29 0.80 16 21 O -0.36 -5.59 10.61 -46.62 -0.49 -6.08 16 22 C -0.12 -2.03 4.56 -26.73 -0.12 -2.15 16 23 C -0.11 -1.81 5.77 -26.73 -0.15 -1.96 16 24 C -0.11 -1.63 5.92 -26.74 -0.16 -1.79 16 25 C -0.12 -1.71 5.75 -26.79 -0.15 -1.87 16 26 C -0.11 -1.73 4.64 -26.79 -0.12 -1.86 16 27 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.38 8.91 6.53 -40.82 -0.27 8.64 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.40 7.58 -51.93 -0.39 1.01 16 31 H 0.40 6.83 7.28 -40.82 -0.30 6.53 16 32 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.73 8.06 -51.93 -0.42 0.32 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 1.21 7.17 -51.93 -0.37 0.83 16 42 H 0.08 1.60 7.60 -51.93 -0.39 1.20 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.07 1.25 6.86 -51.93 -0.36 0.89 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.86 7.12 -51.93 -0.37 0.49 16 49 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 376.99 15.07 5.68 5.68 Total: -1.00 -30.35 376.99 -9.74 -40.10 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -8.69 Total: 13.53 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -1.37 Total: -4.20 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: 0.25 Total: -53.81 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.59 Total: -18.22 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.35 -9.74 -40.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115422258.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.975 kcal (2) G-P(sol) polarization free energy of solvation -30.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds