Wall clock time and date at job start Fri Apr 10 2020 22:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99888 * 2 1 4 4 H 1.48505 * 109.46908 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47278 * 299.99988 * 3 2 1 6 6 H 1.48496 * 109.47420 * 60.00100 * 3 2 1 7 7 C 1.38809 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99853 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00331 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00578 * 174.07276 * 9 7 2 11 11 C 1.53007 * 109.47197 * 300.08139 * 10 9 7 12 12 N 1.46496 * 109.46951 * 305.24775 * 11 10 9 13 13 C 1.34772 * 120.00258 * 175.98584 * 12 11 10 14 14 O 1.21280 * 119.99753 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00367 * 179.97438 * 13 12 11 16 16 C 1.52996 * 109.47288 * 179.97438 * 15 13 12 17 17 H 1.09004 * 110.67446 * 303.48234 * 16 15 13 18 18 C 1.55002 * 110.61961 * 180.52329 * 16 15 13 19 19 C 1.54808 * 102.09077 * 204.46891 * 18 16 15 20 20 C 1.54099 * 104.19034 * 20.88297 * 19 18 16 21 21 O 1.43747 * 107.29330 * 2.02305 * 20 19 18 22 22 C 1.52999 * 109.46759 * 60.07553 * 10 9 7 23 23 C 1.53004 * 109.47148 * 60.00730 * 22 10 9 24 24 C 1.52992 * 109.47081 * 59.99670 * 23 22 10 25 25 C 1.52999 * 109.47399 * 300.00176 * 24 23 22 26 26 C 1.52992 * 109.47651 * 180.02562 * 10 9 7 27 27 H 0.97001 * 119.99945 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99993 * 354.07628 * 9 7 2 29 29 H 1.08992 * 109.47406 * 185.24390 * 11 10 9 30 30 H 1.09002 * 109.47302 * 65.24258 * 11 10 9 31 31 H 0.97008 * 120.00029 * 355.98074 * 12 11 10 32 32 H 1.08998 * 109.47219 * 59.99131 * 15 13 12 33 33 H 1.09003 * 109.46894 * 299.99540 * 15 13 12 34 34 H 1.09002 * 110.90756 * 86.27078 * 18 16 15 35 35 H 1.09001 * 110.93373 * 322.68160 * 18 16 15 36 36 H 1.08997 * 110.49447 * 262.19740 * 19 18 16 37 37 H 1.09013 * 110.48322 * 139.55315 * 19 18 16 38 38 H 1.08998 * 109.87776 * 242.60358 * 20 19 18 39 39 H 1.08995 * 109.87970 * 121.44943 * 20 19 18 40 40 H 1.09004 * 109.47124 * 180.02562 * 22 10 9 41 41 H 1.09002 * 109.47383 * 300.00109 * 22 10 9 42 42 H 1.09004 * 109.46690 * 299.99754 * 23 22 10 43 43 H 1.08996 * 109.47019 * 180.02562 * 23 22 10 44 44 H 1.09008 * 109.46798 * 180.02562 * 24 23 22 45 45 H 1.08999 * 109.47565 * 60.00065 * 24 23 22 46 46 H 1.09004 * 109.47124 * 300.00377 * 25 24 23 47 47 H 1.09002 * 109.47383 * 180.02562 * 25 24 23 48 48 H 1.08996 * 109.47473 * 59.99838 * 26 10 9 49 49 H 1.09004 * 109.47290 * 180.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0520 -3.6534 -0.1321 11 6 2.8174 -3.6667 -1.4569 12 7 1.8895 -3.4032 -2.5595 13 6 2.3551 -3.2866 -3.8189 14 8 3.5423 -3.3994 -4.0393 15 6 1.4005 -3.0160 -4.9532 16 6 2.1806 -2.9293 -6.2665 17 1 2.9567 -2.1666 -6.2035 18 6 1.2243 -2.6382 -7.4511 19 6 2.0156 -3.2070 -8.6540 20 6 3.0098 -4.1976 -8.0177 21 8 2.7535 -4.2110 -6.6033 22 6 3.0387 -3.7979 1.0282 23 6 2.2735 -3.7846 2.3531 24 6 1.2805 -4.9482 2.3801 25 6 0.2938 -4.8036 1.2197 26 6 1.0591 -4.8170 -0.1038 27 1 -0.4850 0.8401 0.0004 28 1 0.3595 -2.3903 0.0865 29 1 3.2819 -4.6425 -1.5984 30 1 3.5884 -2.8964 -1.4390 31 1 0.9399 -3.3126 -2.3832 32 1 0.8829 -2.0734 -4.7755 33 1 0.6720 -3.8245 -5.0156 34 1 1.0609 -1.5665 -7.5648 35 1 0.2773 -3.1630 -7.3253 36 1 2.5495 -2.4097 -9.1709 37 1 1.3461 -3.7262 -9.3399 38 1 4.0320 -3.8692 -8.2060 39 1 2.8563 -5.1941 -8.4316 40 1 3.5796 -4.7391 0.9302 41 1 3.7463 -2.9689 1.0090 42 1 1.7329 -2.8432 2.4510 43 1 2.9765 -3.8871 3.1797 44 1 0.7350 -4.9384 3.3238 45 1 1.8210 -5.8896 2.2822 46 1 -0.2469 -3.8622 1.3176 47 1 -0.4140 -5.6324 1.2392 48 1 0.3555 -4.7145 -0.9298 49 1 1.5998 -5.7584 -0.2012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115422258.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:41 Heat of formation + Delta-G solvation = -113.746429 kcal Electronic energy + Delta-G solvation = -27284.677915 eV Core-core repulsion = 23631.003052 eV Total energy + Delta-G solvation = -3653.674863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.09369 -40.31360 -39.41307 -35.83599 -35.00312 -33.42543 -32.85063 -32.39386 -31.55670 -30.26091 -28.01691 -26.13701 -25.68006 -23.52519 -22.94547 -22.12245 -21.71738 -21.07929 -19.80066 -19.02821 -18.13765 -17.45635 -17.15977 -16.74657 -16.41539 -16.19863 -15.90777 -15.77681 -15.51255 -15.12280 -14.93880 -14.59879 -14.33159 -14.17649 -13.73154 -13.41120 -13.39144 -13.22039 -12.96228 -12.90572 -12.83112 -12.60169 -12.58679 -12.45912 -12.15345 -12.10516 -12.02966 -11.91288 -11.68469 -11.52586 -11.21551 -11.13647 -10.88055 -10.69105 -10.62088 -10.56742 -9.81865 -8.88915 -7.87172 -5.10802 1.42595 1.46959 1.52623 1.81846 2.43673 2.59314 2.96092 3.45919 3.64638 3.76572 3.82667 3.93219 4.00308 4.04723 4.05232 4.14530 4.17988 4.27651 4.41268 4.49070 4.52549 4.61354 4.66482 4.73276 4.77119 4.79909 4.82123 4.86654 4.93512 4.94090 4.96266 4.98905 5.08814 5.11947 5.19353 5.22666 5.25128 5.47624 5.49374 5.51978 5.59743 5.63104 5.74950 5.79941 6.04515 6.36342 6.76303 7.43811 7.45525 8.17815 8.44992 9.35356 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012237 B = 0.004256 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.606918 B = 6576.856138 C = 8052.614081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.061 4.061 3 Si 0.943 3.057 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.297 1.297 7 C -0.204 4.204 8 H 0.058 0.942 9 N -0.707 5.707 10 C 0.190 3.810 11 C 0.125 3.875 12 N -0.699 5.699 13 C 0.502 3.498 14 O -0.590 6.590 15 C -0.129 4.129 16 C 0.089 3.911 17 H 0.051 0.949 18 C -0.144 4.144 19 C -0.148 4.148 20 C 0.035 3.965 21 O -0.394 6.394 22 C -0.116 4.116 23 C -0.106 4.106 24 C -0.108 4.108 25 C -0.112 4.112 26 C -0.108 4.108 27 H 0.247 0.753 28 H 0.378 0.622 29 H 0.058 0.942 30 H 0.028 0.972 31 H 0.406 0.594 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.050 0.950 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.035 0.965 42 H 0.042 0.958 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.045 0.955 47 H 0.076 0.924 48 H 0.062 0.938 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.430 -11.374 -9.961 15.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.253 4.253 3 Si 0.775 3.225 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.225 1.225 7 C -0.337 4.337 8 H 0.076 0.924 9 N -0.348 5.348 10 C 0.100 3.900 11 C -0.002 4.002 12 N -0.349 5.349 13 C 0.290 3.710 14 O -0.471 6.471 15 C -0.169 4.169 16 C 0.031 3.969 17 H 0.069 0.931 18 C -0.182 4.182 19 C -0.186 4.186 20 C -0.042 4.042 21 O -0.314 6.314 22 C -0.156 4.156 23 C -0.143 4.143 24 C -0.145 4.145 25 C -0.150 4.150 26 C -0.146 4.146 27 H 0.056 0.944 28 H 0.212 0.788 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.242 0.758 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.068 0.932 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.063 0.937 47 H 0.094 0.906 48 H 0.081 0.919 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.410 -11.510 -9.967 15.231 hybrid contribution 0.106 1.821 0.182 1.833 sum -0.304 -9.689 -9.785 13.773 Atomic orbital electron populations 1.69744 1.05611 1.25165 1.60442 1.25090 0.95974 0.99340 1.04939 0.85523 0.78101 0.82434 0.76431 1.20683 1.22632 1.22456 1.19202 0.90552 0.85116 1.38807 0.92439 1.42445 1.05810 0.99863 1.86689 1.20016 0.92207 0.86964 0.90838 1.21656 0.92267 0.98452 0.87836 1.45745 1.11779 1.71294 1.06040 1.21130 0.89395 0.75768 0.84732 1.90641 1.18929 1.52641 1.84883 1.21775 0.98020 1.06217 0.90888 1.22862 0.94141 0.85905 0.93995 0.93103 1.23195 0.98992 1.03185 0.92820 1.22929 0.98241 0.99192 0.98236 1.23332 0.98637 1.01321 0.80916 1.88949 1.83588 1.34624 1.24236 1.21814 0.97745 1.00305 0.95765 1.21307 0.97997 0.98891 0.96152 1.21458 0.96901 0.98048 0.98135 1.21423 0.97843 1.01389 0.94313 1.21641 0.97692 0.97159 0.98065 0.94421 0.78793 0.92386 0.95396 0.75757 0.86114 0.86146 0.88760 0.88930 0.89847 0.88447 0.93172 0.88760 0.91096 0.94601 0.93924 0.92367 0.91978 0.90869 0.93665 0.90551 0.91938 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.56 13.07 21.65 0.28 -54.27 16 2 C -0.06 -3.31 5.50 84.86 0.47 -2.85 16 3 Si 0.94 46.05 29.55 68.60 2.03 48.08 16 4 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 5 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 6 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 7 C -0.20 -10.51 8.72 84.03 0.73 -9.78 16 8 H 0.06 3.07 6.75 -2.91 -0.02 3.05 16 9 N -0.71 -30.89 3.55 -303.36 -1.08 -31.97 16 10 C 0.19 6.69 0.40 3.60 0.00 6.69 16 11 C 0.12 4.69 4.32 86.38 0.37 5.06 16 12 N -0.70 -24.92 5.14 -463.07 -2.38 -27.30 16 13 C 0.50 18.55 7.74 87.66 0.68 19.23 16 14 O -0.59 -26.65 15.56 7.86 0.12 -26.53 16 15 C -0.13 -3.52 5.48 29.85 0.16 -3.36 16 16 C 0.09 2.41 2.79 31.28 0.09 2.49 16 17 H 0.05 1.60 8.04 -2.38 -0.02 1.58 16 18 C -0.14 -2.59 6.59 31.90 0.21 -2.38 16 19 C -0.15 -2.33 7.01 31.58 0.22 -2.11 16 20 C 0.03 0.74 7.70 72.35 0.56 1.30 16 21 O -0.39 -12.08 10.61 -138.09 -1.47 -13.54 16 22 C -0.12 -3.94 4.56 30.60 0.14 -3.80 16 23 C -0.11 -3.39 5.77 30.59 0.18 -3.21 16 24 C -0.11 -2.80 5.92 30.59 0.18 -2.62 16 25 C -0.11 -3.05 5.75 30.56 0.18 -2.87 16 26 C -0.11 -3.03 4.64 30.56 0.14 -2.88 16 27 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 28 H 0.38 17.68 6.53 -92.71 -0.61 17.08 16 29 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.03 1.25 7.58 -2.39 -0.02 1.23 16 31 H 0.41 13.55 7.28 -92.70 -0.67 12.88 16 32 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 33 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.09 1.42 8.06 -2.39 -0.02 1.40 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.04 1.39 7.17 -2.39 -0.02 1.37 16 42 H 0.04 1.69 7.60 -2.39 -0.02 1.67 16 43 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 45 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 46 H 0.04 1.49 6.86 -2.39 -0.02 1.48 16 47 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.06 1.71 7.12 -2.39 -0.02 1.69 16 49 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -67.82 376.99 1.47 -66.35 By element: Atomic # 1 Polarization: 40.61 SS G_CDS: -0.35 Total: 40.27 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 4.31 Total: -1.08 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -3.17 Total: -113.54 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -1.34 Total: -40.07 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -67.82 1.47 -66.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115422258.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.401 kcal (2) G-P(sol) polarization free energy of solvation -67.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds