Wall clock time and date at job start Fri Apr 10 2020 22:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00279 * 2 1 4 4 H 1.48496 * 109.47099 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46970 * 300.00275 * 3 2 1 6 6 H 1.48505 * 109.46770 * 60.00216 * 3 2 1 7 7 C 1.38811 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99920 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00215 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00084 * 174.24185 * 9 7 2 11 11 C 1.53001 * 109.47354 * 62.80113 * 10 9 7 12 12 N 1.46504 * 109.47091 * 54.63113 * 11 10 9 13 13 C 1.34770 * 120.00032 * 176.63191 * 12 11 10 14 14 O 1.21283 * 119.99927 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00034 * 179.97438 * 13 12 11 16 16 H 1.08992 * 109.52349 * 300.00444 * 15 13 12 17 17 C 1.53180 * 109.52217 * 179.87738 * 15 13 12 18 18 C 1.53177 * 109.03590 * 183.11663 * 17 15 13 19 19 C 1.53093 * 109.16149 * 56.97887 * 18 17 15 20 20 O 1.42896 * 109.41633 * 302.39406 * 19 18 17 21 21 C 1.42908 * 114.15959 * 61.12751 * 20 19 18 22 22 C 1.53002 * 109.47370 * 182.80058 * 10 9 7 23 23 C 1.53002 * 109.47147 * 59.99958 * 22 10 9 24 24 C 1.52996 * 109.47266 * 59.99970 * 23 22 10 25 25 C 1.53002 * 109.47484 * 300.00604 * 24 23 22 26 26 C 1.53002 * 109.47362 * 59.99455 * 25 24 23 27 27 H 0.96997 * 119.99882 * 359.97438 * 1 2 3 28 28 H 0.96998 * 119.99913 * 354.24361 * 9 7 2 29 29 H 1.09003 * 109.46655 * 294.63582 * 11 10 9 30 30 H 1.09001 * 109.47236 * 174.63735 * 11 10 9 31 31 H 0.96998 * 119.99976 * 356.36640 * 12 11 10 32 32 H 1.09004 * 109.54365 * 302.98619 * 17 15 13 33 33 H 1.08999 * 109.54243 * 63.15523 * 17 15 13 34 34 H 1.08993 * 109.52101 * 176.88677 * 18 17 15 35 35 H 1.08996 * 109.52287 * 297.07704 * 18 17 15 36 36 H 1.09004 * 109.47780 * 62.37978 * 19 18 17 37 37 H 1.09001 * 109.47842 * 182.40439 * 19 18 17 38 38 H 1.08994 * 109.54035 * 178.92539 * 21 20 19 39 39 H 1.08999 * 109.42662 * 58.88119 * 21 20 19 40 40 H 1.08997 * 109.47404 * 180.02562 * 22 10 9 41 41 H 1.09004 * 109.46888 * 300.00572 * 22 10 9 42 42 H 1.09006 * 109.46841 * 300.00561 * 23 22 10 43 43 H 1.09001 * 109.47128 * 180.02562 * 23 22 10 44 44 H 1.08991 * 109.47488 * 180.02562 * 24 23 22 45 45 H 1.09003 * 109.46697 * 59.99737 * 24 23 22 46 46 H 1.09008 * 109.46786 * 300.00128 * 25 24 23 47 47 H 1.08993 * 109.47505 * 179.97438 * 25 24 23 48 48 H 1.08997 * 109.47376 * 180.02562 * 26 25 24 49 49 H 1.08997 * 109.47047 * 60.00334 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0523 -3.6536 -0.1284 11 6 2.9869 -3.8283 1.0703 12 7 2.2167 -3.7119 2.3111 13 6 2.8223 -3.8999 3.5003 14 8 4.0050 -4.1649 3.5433 15 6 2.0301 -3.7796 4.7767 16 1 1.6099 -2.7767 4.8514 17 6 2.9477 -4.0407 5.9752 18 6 2.1162 -3.9928 7.2607 19 6 0.9815 -5.0159 7.1638 20 8 0.1851 -4.7342 6.0113 21 6 0.8978 -4.8100 4.7750 22 6 1.0546 -4.8128 -0.1704 23 6 0.1200 -4.6381 -1.3692 24 6 0.9422 -4.6259 -2.6594 25 6 1.9400 -3.4667 -2.6174 26 6 2.8746 -3.6414 -1.4186 27 1 -0.4850 0.8400 0.0004 28 1 0.3592 -2.3902 0.0841 29 1 3.7564 -3.0566 1.0466 30 1 3.4564 -4.8110 1.0248 31 1 1.2717 -3.4958 2.2769 32 1 3.4077 -5.0239 5.8748 33 1 3.7244 -3.2770 6.0129 34 1 2.7507 -4.2322 8.1140 35 1 1.6968 -2.9946 7.3862 36 1 1.4020 -6.0180 7.0791 37 1 0.3611 -4.9564 8.0580 38 1 0.2180 -4.6017 3.9489 39 1 1.3163 -5.8097 4.6585 40 1 1.5954 -5.7544 -0.2651 41 1 0.4688 -4.8214 0.7488 42 1 -0.4207 -3.6965 -1.2740 43 1 -0.5910 -5.4638 -1.3988 44 1 0.2765 -4.5010 -3.5133 45 1 1.4831 -5.5674 -2.7544 46 1 1.3992 -2.5251 -2.5222 47 1 2.5261 -3.4583 -3.5363 48 1 3.5852 -2.8154 -1.3885 49 1 3.4154 -4.5830 -1.5138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115444198.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:44 Heat of formation + Delta-G solvation = -118.223762 kcal Electronic energy + Delta-G solvation = -27705.800797 eV Core-core repulsion = 24051.931782 eV Total energy + Delta-G solvation = -3653.869015 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.40135 -40.27402 -39.27328 -35.90796 -35.07523 -34.59167 -33.05414 -32.11988 -31.54018 -30.20128 -27.05980 -25.87893 -25.70764 -25.00036 -23.43834 -22.07742 -21.57975 -20.84088 -19.79982 -19.04484 -18.33249 -17.32021 -17.18787 -16.78016 -16.49531 -16.15923 -15.93699 -15.71244 -15.38092 -15.33004 -14.97847 -14.68249 -14.48683 -14.29969 -14.04269 -13.60744 -13.40588 -13.35908 -13.23613 -12.90773 -12.84632 -12.60065 -12.58591 -12.47400 -12.14106 -12.03305 -11.89472 -11.87283 -11.67743 -11.38689 -11.31317 -11.09065 -10.93882 -10.70230 -10.68412 -10.47217 -9.90617 -8.90524 -7.88170 -5.12278 1.42552 1.46771 1.52213 1.63376 2.30752 2.58176 2.90499 3.45041 3.59961 3.77225 3.80583 3.84061 3.93625 3.98100 4.03274 4.14148 4.15377 4.27570 4.40943 4.45024 4.49333 4.62205 4.67973 4.69765 4.75722 4.77674 4.81928 4.82729 4.90396 4.93595 4.97838 5.03279 5.07994 5.12408 5.18867 5.23060 5.30804 5.46238 5.50397 5.51992 5.58453 5.61884 5.69812 5.81914 6.17282 6.35206 6.64797 7.28174 7.44073 8.17109 8.43029 9.34394 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011717 B = 0.004716 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.044724 B = 5935.447687 C = 7146.648241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.063 4.063 3 Si 0.944 3.056 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.300 1.300 7 C -0.204 4.204 8 H 0.061 0.939 9 N -0.709 5.709 10 C 0.189 3.811 11 C 0.121 3.879 12 N -0.696 5.696 13 C 0.513 3.487 14 O -0.588 6.588 15 C -0.139 4.139 16 H 0.100 0.900 17 C -0.099 4.099 18 C -0.150 4.150 19 C 0.052 3.948 20 O -0.392 6.392 21 C 0.080 3.920 22 C -0.107 4.107 23 C -0.113 4.113 24 C -0.107 4.107 25 C -0.106 4.106 26 C -0.113 4.113 27 H 0.246 0.754 28 H 0.377 0.623 29 H 0.030 0.970 30 H 0.067 0.933 31 H 0.406 0.594 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.043 0.957 43 H 0.075 0.925 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.040 0.960 47 H 0.056 0.944 48 H 0.037 0.963 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.506 -14.419 7.477 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.255 4.255 3 Si 0.776 3.224 4 H -0.204 1.204 5 H -0.226 1.226 6 H -0.228 1.228 7 C -0.337 4.337 8 H 0.079 0.921 9 N -0.349 5.349 10 C 0.098 3.902 11 C -0.005 4.005 12 N -0.345 5.345 13 C 0.300 3.700 14 O -0.469 6.469 15 C -0.161 4.161 16 H 0.118 0.882 17 C -0.137 4.137 18 C -0.187 4.187 19 C -0.025 4.025 20 O -0.311 6.311 21 C 0.003 3.997 22 C -0.145 4.145 23 C -0.150 4.150 24 C -0.145 4.145 25 C -0.144 4.144 26 C -0.153 4.153 27 H 0.055 0.945 28 H 0.211 0.789 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.243 0.757 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.133 0.867 38 H 0.122 0.878 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.059 0.941 47 H 0.074 0.926 48 H 0.056 0.944 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.275 -14.440 7.472 16.309 hybrid contribution 0.245 1.934 -0.240 1.964 sum 1.520 -12.507 7.231 14.526 Atomic orbital electron populations 1.69752 1.05762 1.25195 1.60365 1.25136 0.95948 0.99525 1.04922 0.85500 0.78193 0.82335 0.76324 1.20359 1.22571 1.22825 1.19210 0.90611 0.85014 1.38838 0.92143 1.42479 1.05770 0.99950 1.86721 1.20038 0.91768 0.86920 0.91460 1.21746 0.94488 0.99503 0.84807 1.45843 1.14062 1.69335 1.05266 1.20813 0.87499 0.75922 0.85750 1.90629 1.17407 1.50880 1.88017 1.21996 0.97933 1.03316 0.92856 0.88154 1.21368 0.96959 1.02629 0.92751 1.22207 0.97946 1.00992 0.97588 1.22855 0.93359 0.97602 0.88640 1.87948 1.36928 1.91489 1.14706 1.22457 0.92819 0.96853 0.87590 1.21663 0.97089 0.97156 0.98592 1.21438 0.97758 1.01271 0.94561 1.21446 0.97501 0.98227 0.97304 1.21303 0.97432 0.98872 0.96790 1.21775 0.97713 1.00459 0.95356 0.94463 0.78882 0.95188 0.91458 0.75704 0.91437 0.92230 0.88421 0.91222 0.92037 0.86748 0.87809 0.91879 0.89811 0.91846 0.93846 0.90652 0.92328 0.90754 0.94105 0.92554 0.94446 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.06 13.07 21.65 0.28 -54.77 16 2 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 3 Si 0.94 45.86 29.55 68.60 2.03 47.89 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 6 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 7 C -0.20 -10.34 8.70 84.03 0.73 -9.61 16 8 H 0.06 3.15 6.77 -2.91 -0.02 3.13 16 9 N -0.71 -30.36 3.40 -303.34 -1.03 -31.39 16 10 C 0.19 6.38 0.41 3.61 0.00 6.38 16 11 C 0.12 4.22 4.37 86.38 0.38 4.60 16 12 N -0.70 -22.94 4.99 -463.05 -2.31 -25.25 16 13 C 0.51 17.14 7.16 87.66 0.63 17.77 16 14 O -0.59 -23.48 15.97 -3.04 -0.05 -23.53 16 15 C -0.14 -3.72 2.72 -11.45 -0.03 -3.75 16 16 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 17 C -0.10 -2.38 4.62 30.71 0.14 -2.24 16 18 C -0.15 -2.67 6.14 30.68 0.19 -2.48 16 19 C 0.05 0.88 6.84 72.01 0.49 1.37 16 20 O -0.39 -9.06 10.76 -148.98 -1.60 -10.66 16 21 C 0.08 1.83 6.01 72.01 0.43 2.26 16 22 C -0.11 -2.90 4.65 30.60 0.14 -2.75 16 23 C -0.11 -3.07 5.75 30.59 0.18 -2.90 16 24 C -0.11 -2.82 5.92 30.59 0.18 -2.64 16 25 C -0.11 -3.44 5.77 30.60 0.18 -3.27 16 26 C -0.11 -3.74 4.52 30.60 0.14 -3.60 16 27 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 28 H 0.38 17.50 6.63 -92.71 -0.61 16.89 16 29 H 0.03 1.24 7.50 -2.39 -0.02 1.22 16 30 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.41 13.01 6.88 -92.71 -0.64 12.37 16 32 H 0.07 1.66 8.03 -2.38 -0.02 1.64 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.10 2.25 7.66 -2.39 -0.02 2.23 16 39 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.06 1.65 7.29 -2.39 -0.02 1.63 16 42 H 0.04 1.47 6.92 -2.38 -0.02 1.45 16 43 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.04 1.67 7.60 -2.38 -0.02 1.65 16 47 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.04 1.41 7.23 -2.39 -0.02 1.39 16 49 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -63.36 372.94 1.24 -62.12 By element: Atomic # 1 Polarization: 39.72 SS G_CDS: -0.32 Total: 39.40 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 4.24 Total: -3.81 kcal Atomic # 7 Polarization: -108.36 SS G_CDS: -3.06 Total: -111.42 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -1.65 Total: -34.19 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -63.36 1.24 -62.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115444198.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.103 kcal (2) G-P(sol) polarization free energy of solvation -63.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds