Wall clock time and date at job start Fri Apr 10 2020 22:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86798 * 120.00307 * 2 1 4 4 H 1.48500 * 109.47063 * 270.00076 * 3 2 1 5 5 H 1.48497 * 109.47086 * 29.99893 * 3 2 1 6 6 H 1.48504 * 109.47175 * 150.00087 * 3 2 1 7 7 C 1.38824 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99681 * 359.97438 * 7 2 1 9 9 N 1.36938 * 119.99738 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99759 * 173.39892 * 9 7 2 11 11 C 1.53003 * 109.47089 * 301.12141 * 10 9 7 12 12 N 1.46497 * 109.47053 * 305.24482 * 11 10 9 13 13 C 1.34778 * 119.99991 * 175.77613 * 12 11 10 14 14 O 1.21274 * 119.99912 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99990 * 180.02562 * 13 12 11 16 16 H 1.08998 * 109.52340 * 59.99321 * 15 13 12 17 17 C 1.53176 * 109.52447 * 180.12461 * 15 13 12 18 18 C 1.53174 * 109.04083 * 176.94600 * 17 15 13 19 19 C 1.53092 * 109.16009 * 303.01758 * 18 17 15 20 20 O 1.42909 * 109.41492 * 57.61108 * 19 18 17 21 21 C 1.42903 * 114.09239 * 298.83741 * 20 19 18 22 22 C 1.52998 * 109.46784 * 61.11677 * 10 9 7 23 23 C 1.53004 * 109.46949 * 59.99972 * 22 10 9 24 24 C 1.53000 * 109.46963 * 60.00109 * 23 22 10 25 25 C 1.52997 * 109.46895 * 299.99509 * 24 23 22 26 26 C 1.52992 * 109.47215 * 181.11707 * 10 9 7 27 27 H 0.97001 * 120.00441 * 0.02562 * 1 2 3 28 28 H 0.96996 * 119.99987 * 353.40408 * 9 7 2 29 29 H 1.08998 * 109.46394 * 185.24535 * 11 10 9 30 30 H 1.08996 * 109.47469 * 65.24874 * 11 10 9 31 31 H 0.97005 * 119.99957 * 355.77118 * 12 11 10 32 32 H 1.09005 * 109.54068 * 296.81727 * 17 15 13 33 33 H 1.09003 * 109.54527 * 56.98507 * 17 15 13 34 34 H 1.09002 * 109.51901 * 62.92001 * 18 17 15 35 35 H 1.08990 * 109.52312 * 183.04668 * 18 17 15 36 36 H 1.09003 * 109.47917 * 177.58564 * 19 18 17 37 37 H 1.08993 * 109.48213 * 297.61318 * 19 18 17 38 38 H 1.09002 * 109.48023 * 301.17131 * 21 20 19 39 39 H 1.09003 * 109.47586 * 181.14449 * 21 20 19 40 40 H 1.09002 * 109.47360 * 179.97438 * 22 10 9 41 41 H 1.09003 * 109.47731 * 300.00067 * 22 10 9 42 42 H 1.08998 * 109.47126 * 299.99595 * 23 22 10 43 43 H 1.09005 * 109.47293 * 179.97438 * 23 22 10 44 44 H 1.09009 * 109.47093 * 180.02562 * 24 23 22 45 45 H 1.08998 * 109.47619 * 59.99788 * 24 23 22 46 46 H 1.09002 * 109.47699 * 300.00603 * 25 24 23 47 47 H 1.09003 * 109.47427 * 180.02562 * 25 24 23 48 48 H 1.09006 * 109.47278 * 60.00056 * 26 10 9 49 49 H 1.08998 * 109.47397 * 180.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1121 -2.4626 0.1442 11 6 3.7219 -3.1300 1.4646 12 7 3.9393 -2.1921 2.5687 13 6 3.5830 -2.5335 3.8229 14 8 3.0820 -3.6169 4.0373 15 6 3.8061 -1.5685 4.9587 16 1 3.2525 -0.6488 4.7693 17 6 3.3207 -2.1979 6.2681 18 6 3.6221 -1.2400 7.4248 19 6 5.1223 -0.9360 7.4475 20 8 5.5138 -0.3817 6.1899 21 6 5.2993 -1.2517 5.0767 22 6 3.7632 -3.3923 -1.0197 23 6 4.1533 -2.7249 -2.3401 24 6 5.6573 -2.4442 -2.3448 25 6 6.0062 -1.5145 -1.1808 26 6 5.6160 -2.1819 0.1395 27 1 -0.4851 0.8400 -0.0004 28 1 3.8645 -0.3678 -0.0976 29 1 4.3340 -4.0190 1.6170 30 1 2.6702 -3.4144 1.4311 31 1 4.3398 -1.3254 2.3972 32 1 2.2465 -2.3746 6.2114 33 1 3.8376 -3.1435 6.4318 34 1 3.0647 -0.3137 7.2852 35 1 3.3289 -1.7031 8.3669 36 1 5.3363 -0.2212 8.2422 37 1 5.6771 -1.8567 7.6276 38 1 5.8565 -2.1766 5.2256 39 1 5.6408 -0.7645 4.1635 40 1 4.3085 -4.3299 -0.9120 41 1 2.6917 -3.5924 -1.0165 42 1 3.6082 -1.7872 -2.4482 43 1 3.9051 -3.3874 -3.1694 44 1 5.9352 -1.9683 -3.2853 45 1 6.2023 -3.3819 -2.2367 46 1 5.4611 -0.5767 -1.2888 47 1 7.0776 -1.3141 -1.1844 48 1 5.8646 -1.5195 0.9688 49 1 6.1611 -3.1197 0.2472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115444199.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:49 Heat of formation + Delta-G solvation = -95.604579 kcal Electronic energy + Delta-G solvation = -27846.835492 eV Core-core repulsion = 24193.947318 eV Total energy + Delta-G solvation = -3652.888173 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.18342 -39.13177 -38.08640 -34.58387 -33.56764 -33.33631 -31.76082 -30.99236 -30.38760 -29.13096 -25.86456 -24.92002 -23.96778 -23.48068 -22.27013 -20.99740 -20.36843 -19.64039 -18.32600 -17.78684 -17.17162 -16.34650 -16.02719 -15.44137 -15.18060 -14.98501 -14.53889 -14.46576 -14.12066 -13.85523 -13.73237 -13.50204 -13.28413 -12.93593 -12.67512 -12.59420 -12.21898 -12.13980 -12.01543 -11.71607 -11.57330 -11.23268 -11.18554 -11.00202 -10.99391 -10.86166 -10.65764 -10.49010 -10.39103 -10.03753 -9.93444 -9.72238 -9.68072 -9.37228 -9.33881 -8.92184 -8.46185 -7.32567 -5.79246 -3.16268 3.01713 3.30284 3.33300 3.41659 3.55353 3.81203 4.54190 4.61224 4.78248 4.81712 4.85514 5.00105 5.05627 5.10105 5.11516 5.25337 5.27911 5.32707 5.46786 5.52421 5.60006 5.60559 5.67712 5.70765 5.78233 5.81954 5.87939 5.88830 5.96788 6.02864 6.09176 6.12702 6.17519 6.26028 6.29544 6.41649 6.48636 6.56009 6.68347 6.70619 6.90800 6.99325 7.00809 7.04684 7.95514 8.00158 8.39190 8.66200 9.16295 9.87922 10.07138 11.38861 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012474 B = 0.004906 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.199615 B = 5705.702883 C = 6571.445009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.877 3.123 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.234 4.234 8 H 0.090 0.910 9 N -0.735 5.735 10 C 0.197 3.803 11 C 0.118 3.882 12 N -0.700 5.700 13 C 0.518 3.482 14 O -0.550 6.550 15 C -0.146 4.146 16 H 0.106 0.894 17 C -0.100 4.100 18 C -0.157 4.157 19 C 0.058 3.942 20 O -0.378 6.378 21 C 0.074 3.926 22 C -0.116 4.116 23 C -0.110 4.110 24 C -0.114 4.114 25 C -0.116 4.116 26 C -0.118 4.118 27 H 0.258 0.742 28 H 0.361 0.639 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.398 0.602 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.097 0.903 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.048 0.952 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.065 0.935 47 H 0.052 0.948 48 H 0.057 0.943 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.017 -3.296 7.486 16.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.187 4.187 3 Si 0.707 3.293 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.364 4.364 8 H 0.108 0.892 9 N -0.379 5.379 10 C 0.106 3.894 11 C -0.008 4.008 12 N -0.349 5.349 13 C 0.303 3.697 14 O -0.428 6.428 15 C -0.167 4.167 16 H 0.124 0.876 17 C -0.138 4.138 18 C -0.195 4.195 19 C -0.019 4.019 20 O -0.297 6.297 21 C -0.003 4.003 22 C -0.156 4.156 23 C -0.148 4.148 24 C -0.152 4.152 25 C -0.154 4.154 26 C -0.156 4.156 27 H 0.069 0.931 28 H 0.194 0.806 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.233 0.767 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.486 -3.941 7.618 15.982 hybrid contribution 0.355 1.501 -0.167 1.552 sum 13.841 -2.439 7.451 15.907 Atomic orbital electron populations 1.69688 1.05107 1.25656 1.57396 1.24650 0.95067 0.96879 1.02151 0.86689 0.79235 0.85626 0.77703 1.21274 1.21986 1.20342 1.18916 0.80381 0.94458 1.42655 0.89178 1.42797 1.03978 1.02440 1.88654 1.19788 0.89967 0.87944 0.91726 1.21809 1.01845 0.90760 0.86391 1.45755 1.62355 1.20205 1.06625 1.20201 0.78187 0.87491 0.83806 1.90656 1.44087 1.23759 1.84337 1.22003 0.99200 1.00317 0.95203 0.87570 1.21369 1.02698 0.98045 0.91685 1.22231 0.97233 1.00705 0.99293 1.22621 0.94243 0.98904 0.86110 1.87956 1.84306 1.42408 1.15009 1.22497 0.93024 0.94675 0.90115 1.21806 1.01752 0.96965 0.95080 1.21379 0.94965 1.01854 0.96565 1.21500 0.97263 0.98847 0.97579 1.21481 0.99688 0.99386 0.94812 1.21757 0.96004 1.00535 0.97319 0.93141 0.80551 0.93062 0.90898 0.76725 0.90574 0.91107 0.90845 0.90597 0.88885 0.93148 0.92639 0.88470 0.93401 0.91258 0.90333 0.93352 0.92899 0.92836 0.91679 0.92900 0.92467 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.29 13.97 55.49 0.78 -27.51 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 20.92 27.67 -169.99 -4.70 16.21 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.05 6.62 56.52 0.37 -5.68 16 7 C -0.23 -5.96 9.20 -15.05 -0.14 -6.10 16 8 H 0.09 2.55 6.99 -52.49 -0.37 2.19 16 9 N -0.74 -14.93 3.36 -47.23 -0.16 -15.09 16 10 C 0.20 3.29 0.40 -131.82 -0.05 3.24 16 11 C 0.12 2.07 4.30 -4.04 -0.02 2.05 16 12 N -0.70 -11.69 5.04 -60.30 -0.30 -12.00 16 13 C 0.52 8.93 7.16 -10.99 -0.08 8.85 16 14 O -0.55 -11.30 15.97 5.56 0.09 -11.21 16 15 C -0.15 -2.04 2.72 -91.63 -0.25 -2.29 16 16 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 17 C -0.10 -1.29 4.62 -26.55 -0.12 -1.41 16 18 C -0.16 -1.60 6.14 -26.59 -0.16 -1.77 16 19 C 0.06 0.57 6.84 37.20 0.25 0.83 16 20 O -0.38 -4.72 10.77 -35.23 -0.38 -5.10 16 21 C 0.07 0.89 6.01 37.21 0.22 1.12 16 22 C -0.12 -1.90 4.58 -26.73 -0.12 -2.02 16 23 C -0.11 -1.71 5.77 -26.73 -0.15 -1.87 16 24 C -0.11 -1.50 5.92 -26.73 -0.16 -1.66 16 25 C -0.12 -1.54 5.75 -26.73 -0.15 -1.70 16 26 C -0.12 -1.61 4.66 -26.73 -0.12 -1.74 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.36 7.32 4.43 -40.82 -0.18 7.14 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.54 7.54 -51.93 -0.39 1.15 16 31 H 0.40 6.23 6.75 -40.82 -0.28 5.96 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.93 8.03 -51.93 -0.42 0.51 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 1.08 7.66 -51.93 -0.40 0.69 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.07 1.31 7.21 -51.93 -0.37 0.93 16 42 H 0.08 1.45 7.60 -51.93 -0.39 1.05 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.97 6.84 -51.93 -0.36 0.62 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.74 7.11 -51.93 -0.37 0.37 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 369.64 15.07 5.57 5.57 Total: -1.00 -30.91 369.64 -8.87 -39.78 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -8.60 Total: 13.67 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -1.15 Total: -4.32 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: 0.31 Total: -54.60 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.29 Total: -16.31 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.70 Total: 16.21 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.91 -8.87 -39.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115444199.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.828 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds