Wall clock time and date at job start Fri Apr 10 2020 22:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86798 * 120.00307 * 2 1 4 4 H 1.48500 * 109.47063 * 270.00076 * 3 2 1 5 5 H 1.48497 * 109.47086 * 29.99893 * 3 2 1 6 6 H 1.48504 * 109.47175 * 150.00087 * 3 2 1 7 7 C 1.38824 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99681 * 359.97438 * 7 2 1 9 9 N 1.36938 * 119.99738 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99759 * 173.39892 * 9 7 2 11 11 C 1.53003 * 109.47089 * 301.12141 * 10 9 7 12 12 N 1.46497 * 109.47053 * 305.24482 * 11 10 9 13 13 C 1.34778 * 119.99991 * 175.77613 * 12 11 10 14 14 O 1.21274 * 119.99912 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99990 * 180.02562 * 13 12 11 16 16 H 1.08998 * 109.52340 * 59.99321 * 15 13 12 17 17 C 1.53176 * 109.52447 * 180.12461 * 15 13 12 18 18 C 1.53174 * 109.04083 * 176.94600 * 17 15 13 19 19 C 1.53092 * 109.16009 * 303.01758 * 18 17 15 20 20 O 1.42909 * 109.41492 * 57.61108 * 19 18 17 21 21 C 1.42903 * 114.09239 * 298.83741 * 20 19 18 22 22 C 1.52998 * 109.46784 * 61.11677 * 10 9 7 23 23 C 1.53004 * 109.46949 * 59.99972 * 22 10 9 24 24 C 1.53000 * 109.46963 * 60.00109 * 23 22 10 25 25 C 1.52997 * 109.46895 * 299.99509 * 24 23 22 26 26 C 1.52992 * 109.47215 * 181.11707 * 10 9 7 27 27 H 0.97001 * 120.00441 * 0.02562 * 1 2 3 28 28 H 0.96996 * 119.99987 * 353.40408 * 9 7 2 29 29 H 1.08998 * 109.46394 * 185.24535 * 11 10 9 30 30 H 1.08996 * 109.47469 * 65.24874 * 11 10 9 31 31 H 0.97005 * 119.99957 * 355.77118 * 12 11 10 32 32 H 1.09005 * 109.54068 * 296.81727 * 17 15 13 33 33 H 1.09003 * 109.54527 * 56.98507 * 17 15 13 34 34 H 1.09002 * 109.51901 * 62.92001 * 18 17 15 35 35 H 1.08990 * 109.52312 * 183.04668 * 18 17 15 36 36 H 1.09003 * 109.47917 * 177.58564 * 19 18 17 37 37 H 1.08993 * 109.48213 * 297.61318 * 19 18 17 38 38 H 1.09002 * 109.48023 * 301.17131 * 21 20 19 39 39 H 1.09003 * 109.47586 * 181.14449 * 21 20 19 40 40 H 1.09002 * 109.47360 * 179.97438 * 22 10 9 41 41 H 1.09003 * 109.47731 * 300.00067 * 22 10 9 42 42 H 1.08998 * 109.47126 * 299.99595 * 23 22 10 43 43 H 1.09005 * 109.47293 * 179.97438 * 23 22 10 44 44 H 1.09009 * 109.47093 * 180.02562 * 24 23 22 45 45 H 1.08998 * 109.47619 * 59.99788 * 24 23 22 46 46 H 1.09002 * 109.47699 * 300.00603 * 25 24 23 47 47 H 1.09003 * 109.47427 * 180.02562 * 25 24 23 48 48 H 1.09006 * 109.47278 * 60.00056 * 26 10 9 49 49 H 1.08998 * 109.47397 * 180.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1121 -2.4626 0.1442 11 6 3.7219 -3.1300 1.4646 12 7 3.9393 -2.1921 2.5687 13 6 3.5830 -2.5335 3.8229 14 8 3.0820 -3.6169 4.0373 15 6 3.8061 -1.5685 4.9587 16 1 3.2525 -0.6488 4.7693 17 6 3.3207 -2.1979 6.2681 18 6 3.6221 -1.2400 7.4248 19 6 5.1223 -0.9360 7.4475 20 8 5.5138 -0.3817 6.1899 21 6 5.2993 -1.2517 5.0767 22 6 3.7632 -3.3923 -1.0197 23 6 4.1533 -2.7249 -2.3401 24 6 5.6573 -2.4442 -2.3448 25 6 6.0062 -1.5145 -1.1808 26 6 5.6160 -2.1819 0.1395 27 1 -0.4851 0.8400 -0.0004 28 1 3.8645 -0.3678 -0.0976 29 1 4.3340 -4.0190 1.6170 30 1 2.6702 -3.4144 1.4311 31 1 4.3398 -1.3254 2.3972 32 1 2.2465 -2.3746 6.2114 33 1 3.8376 -3.1435 6.4318 34 1 3.0647 -0.3137 7.2852 35 1 3.3289 -1.7031 8.3669 36 1 5.3363 -0.2212 8.2422 37 1 5.6771 -1.8567 7.6276 38 1 5.8565 -2.1766 5.2256 39 1 5.6408 -0.7645 4.1635 40 1 4.3085 -4.3299 -0.9120 41 1 2.6917 -3.5924 -1.0165 42 1 3.6082 -1.7872 -2.4482 43 1 3.9051 -3.3874 -3.1694 44 1 5.9352 -1.9683 -3.2853 45 1 6.2023 -3.3819 -2.2367 46 1 5.4611 -0.5767 -1.2888 47 1 7.0776 -1.3141 -1.1844 48 1 5.8646 -1.5195 0.9688 49 1 6.1611 -3.1197 0.2472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115444199.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:48 Heat of formation + Delta-G solvation = -116.421426 kcal Electronic energy + Delta-G solvation = -27847.738178 eV Core-core repulsion = 24193.947318 eV Total energy + Delta-G solvation = -3653.790859 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.43614 -40.36389 -39.30144 -35.97177 -35.11779 -34.60824 -33.22566 -32.30388 -31.59591 -30.69766 -27.09295 -25.88770 -25.40552 -25.03073 -23.49446 -22.09429 -21.61892 -20.87043 -19.78655 -19.69164 -18.41263 -17.32528 -17.20549 -16.70969 -16.50902 -16.28518 -16.05746 -15.77320 -15.35219 -15.15943 -14.99263 -14.76347 -14.57445 -14.27773 -14.09069 -13.90641 -13.64559 -13.42005 -13.31116 -12.94314 -12.85623 -12.66569 -12.58089 -12.35017 -12.15881 -12.10378 -11.93615 -11.90146 -11.69342 -11.40309 -11.25783 -11.19951 -10.97616 -10.74942 -10.72325 -10.48941 -9.93810 -9.24530 -7.94370 -5.27364 1.37485 1.41512 1.49078 1.62759 2.28443 2.52627 2.89088 3.36713 3.54140 3.57871 3.75571 3.80963 3.86957 3.94905 3.97678 4.06193 4.13960 4.26678 4.36766 4.42767 4.44627 4.60918 4.62247 4.67511 4.72154 4.72950 4.77550 4.79877 4.87674 4.91552 4.95100 5.02010 5.05685 5.11711 5.16943 5.22400 5.29231 5.42243 5.42619 5.49142 5.54877 5.63629 5.73113 5.88801 6.15151 6.29089 6.61697 7.16421 7.28056 7.90000 8.10622 9.27837 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012474 B = 0.004906 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.199615 B = 5705.702883 C = 6571.445009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.990 5.990 2 C -0.067 4.067 3 Si 0.944 3.056 4 H -0.285 1.285 5 H -0.309 1.309 6 H -0.238 1.238 7 C -0.196 4.196 8 H 0.048 0.952 9 N -0.730 5.730 10 C 0.194 3.806 11 C 0.124 3.876 12 N -0.695 5.695 13 C 0.513 3.487 14 O -0.589 6.589 15 C -0.141 4.141 16 H 0.099 0.901 17 C -0.100 4.100 18 C -0.150 4.150 19 C 0.053 3.947 20 O -0.391 6.391 21 C 0.081 3.919 22 C -0.115 4.115 23 C -0.108 4.108 24 C -0.109 4.109 25 C -0.116 4.116 26 C -0.112 4.112 27 H 0.251 0.749 28 H 0.367 0.633 29 H 0.071 0.929 30 H 0.024 0.976 31 H 0.406 0.594 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.109 0.891 40 H 0.076 0.924 41 H 0.028 0.972 42 H 0.042 0.958 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.045 0.955 47 H 0.083 0.917 48 H 0.070 0.930 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.476 -2.734 8.216 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.642 5.642 2 C -0.257 4.257 3 Si 0.772 3.228 4 H -0.212 1.212 5 H -0.237 1.237 6 H -0.162 1.162 7 C -0.327 4.327 8 H 0.066 0.934 9 N -0.373 5.373 10 C 0.104 3.896 11 C -0.002 4.002 12 N -0.344 5.344 13 C 0.300 3.700 14 O -0.470 6.470 15 C -0.162 4.162 16 H 0.117 0.883 17 C -0.139 4.139 18 C -0.188 4.188 19 C -0.023 4.023 20 O -0.309 6.309 21 C 0.003 3.997 22 C -0.155 4.155 23 C -0.146 4.146 24 C -0.146 4.146 25 C -0.154 4.154 26 C -0.150 4.150 27 H 0.060 0.940 28 H 0.201 0.799 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.242 0.758 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.133 0.867 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.127 0.873 40 H 0.094 0.906 41 H 0.047 0.953 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.064 0.936 47 H 0.102 0.898 48 H 0.088 0.912 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 18.030 -3.391 8.348 20.156 hybrid contribution -1.084 1.141 -0.411 1.627 sum 16.946 -2.250 7.938 18.848 Atomic orbital electron populations 1.69899 1.07403 1.26050 1.60859 1.25408 0.95785 1.00859 1.03662 0.85579 0.79214 0.80238 0.77768 1.21189 1.23708 1.16187 1.18708 0.82609 0.92448 1.38928 0.93439 1.42703 1.02013 1.04318 1.88296 1.20038 0.92350 0.86175 0.91031 1.21680 0.99277 0.91968 0.87288 1.45739 1.62041 1.20332 1.06337 1.20832 0.77140 0.87475 0.84550 1.90634 1.45720 1.25671 1.84947 1.22015 1.01201 0.98854 0.94173 0.88276 1.21370 1.01262 0.98772 0.92451 1.22209 0.97885 0.99776 0.98894 1.22841 0.93632 1.00176 0.85660 1.87947 1.84275 1.42932 1.15762 1.22479 0.90999 0.95321 0.90869 1.21783 0.99635 0.98382 0.95702 1.21338 0.97110 1.00042 0.96130 1.21475 0.94709 1.00102 0.98322 1.21505 1.01335 0.98313 0.94198 1.21751 0.92564 1.02311 0.98362 0.93969 0.79875 0.91107 0.95742 0.75781 0.92735 0.91327 0.91326 0.88500 0.86661 0.91922 0.91693 0.87321 0.90588 0.95322 0.93941 0.92559 0.91761 0.90622 0.93574 0.89798 0.91153 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.45 13.97 21.65 0.30 -63.15 16 2 C -0.07 -3.80 5.50 84.87 0.47 -3.34 16 3 Si 0.94 43.64 27.67 68.60 1.90 45.54 16 4 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 5 H -0.31 -15.11 7.11 99.48 0.71 -14.41 16 6 H -0.24 -9.33 6.62 99.48 0.66 -8.67 16 7 C -0.20 -10.35 9.20 84.04 0.77 -9.58 16 8 H 0.05 2.91 6.99 -2.91 -0.02 2.89 16 9 N -0.73 -29.39 3.36 -303.34 -1.02 -30.41 16 10 C 0.19 6.26 0.40 3.60 0.00 6.26 16 11 C 0.12 4.36 4.30 86.38 0.37 4.73 16 12 N -0.69 -22.71 5.04 -463.08 -2.34 -25.05 16 13 C 0.51 17.70 7.16 87.66 0.63 18.32 16 14 O -0.59 -24.81 15.97 -3.01 -0.05 -24.86 16 15 C -0.14 -3.83 2.72 -11.45 -0.03 -3.87 16 16 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 17 C -0.10 -2.55 4.62 30.71 0.14 -2.40 16 18 C -0.15 -2.78 6.14 30.68 0.19 -2.59 16 19 C 0.05 0.89 6.84 72.01 0.49 1.38 16 20 O -0.39 -8.60 10.77 -148.98 -1.60 -10.20 16 21 C 0.08 1.74 6.01 72.01 0.43 2.17 16 22 C -0.12 -3.73 4.58 30.60 0.14 -3.59 16 23 C -0.11 -3.25 5.77 30.60 0.18 -3.08 16 24 C -0.11 -2.44 5.92 30.59 0.18 -2.26 16 25 C -0.12 -2.57 5.75 30.59 0.18 -2.40 16 26 C -0.11 -2.60 4.66 30.59 0.14 -2.46 16 27 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 28 H 0.37 14.15 4.43 -92.71 -0.41 13.74 16 29 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.02 1.09 7.54 -2.39 -0.02 1.07 16 31 H 0.41 11.90 6.75 -92.70 -0.63 11.27 16 32 H 0.05 1.58 8.14 -2.38 -0.02 1.57 16 33 H 0.07 1.75 8.03 -2.39 -0.02 1.73 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.11 2.07 7.66 -2.39 -0.02 2.05 16 40 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.03 1.13 7.21 -2.39 -0.02 1.12 16 42 H 0.04 1.57 7.60 -2.39 -0.02 1.55 16 43 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 45 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.05 1.21 6.84 -2.39 -0.02 1.20 16 47 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.07 1.49 7.11 -2.38 -0.02 1.47 16 49 H 0.09 1.73 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -72.40 369.64 1.32 -71.08 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: -0.15 Total: 39.74 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 4.28 Total: -2.69 kcal Atomic # 7 Polarization: -115.56 SS G_CDS: -3.05 Total: -118.61 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -1.65 Total: -35.06 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.90 Total: 45.54 kcal Total: -72.40 1.32 -71.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115444199.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.340 kcal (2) G-P(sol) polarization free energy of solvation -72.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds