Wall clock time and date at job start Fri Apr 10 2020 22:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99854 * 2 1 4 4 H 1.48500 * 109.47159 * 240.00411 * 3 2 1 5 5 H 1.48504 * 109.47144 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47027 * 119.99963 * 3 2 1 7 7 C 1.38815 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00067 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99678 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99649 * 174.25169 * 9 7 2 11 11 C 1.53003 * 109.46981 * 62.83300 * 10 9 7 12 12 N 1.46499 * 109.47325 * 54.62676 * 11 10 9 13 13 C 1.34774 * 119.99997 * 176.63809 * 12 11 10 14 14 O 1.21285 * 119.99897 * 359.72267 * 13 12 11 15 15 C 1.50696 * 120.00104 * 179.97438 * 13 12 11 16 16 C 1.52997 * 109.47452 * 180.02562 * 15 13 12 17 17 H 1.09005 * 110.75640 * 57.01157 * 16 15 13 18 18 C 1.55302 * 110.85061 * 180.71580 * 16 15 13 19 19 C 1.54952 * 100.94520 * 152.32135 * 18 16 15 20 20 O 1.43650 * 105.13162 * 323.55224 * 19 18 16 21 21 C 1.43235 * 109.97119 * 24.43299 * 20 19 18 22 22 C 1.53007 * 109.47169 * 182.82611 * 10 9 7 23 23 C 1.53003 * 109.46606 * 60.00460 * 22 10 9 24 24 C 1.52992 * 109.47480 * 60.00013 * 23 22 10 25 25 C 1.53001 * 109.47104 * 300.00111 * 24 23 22 26 26 C 1.52992 * 109.47306 * 302.82836 * 10 9 7 27 27 H 0.96998 * 120.00066 * 359.97438 * 1 2 3 28 28 H 0.97005 * 120.00137 * 354.25559 * 9 7 2 29 29 H 1.09000 * 109.47074 * 294.62011 * 11 10 9 30 30 H 1.09009 * 109.47118 * 174.62699 * 11 10 9 31 31 H 0.97000 * 119.99781 * 356.63419 * 12 11 10 32 32 H 1.09001 * 109.47137 * 299.99690 * 15 13 12 33 33 H 1.08992 * 109.47381 * 59.99861 * 15 13 12 34 34 H 1.09001 * 111.12135 * 270.23559 * 18 16 15 35 35 H 1.08997 * 111.12884 * 34.39804 * 18 16 15 36 36 H 1.08994 * 110.31217 * 204.63823 * 19 18 16 37 37 H 1.09002 * 110.38948 * 82.50720 * 19 18 16 38 38 H 1.09002 * 109.82563 * 238.77203 * 21 20 19 39 39 H 1.08998 * 109.91182 * 117.84460 * 21 20 19 40 40 H 1.09002 * 109.47153 * 179.97438 * 22 10 9 41 41 H 1.08997 * 109.47165 * 300.00705 * 22 10 9 42 42 H 1.09002 * 109.46927 * 299.99602 * 23 22 10 43 43 H 1.09007 * 109.46818 * 180.02562 * 23 22 10 44 44 H 1.08997 * 109.47566 * 180.02562 * 24 23 22 45 45 H 1.09002 * 109.47376 * 59.99864 * 24 23 22 46 46 H 1.09005 * 109.46678 * 299.99591 * 25 24 23 47 47 H 1.09001 * 109.47382 * 180.02562 * 25 24 23 48 48 H 1.08999 * 109.47498 * 60.00353 * 26 10 9 49 49 H 1.09005 * 109.47019 * 179.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0527 -3.6535 -0.1282 11 6 2.9865 -3.8284 1.0711 12 7 2.2155 -3.7121 2.3114 13 6 2.8205 -3.9001 3.5010 14 8 4.0020 -4.1704 3.5445 15 6 2.0276 -3.7799 4.7769 16 6 2.9451 -4.0373 5.9738 17 1 3.7900 -3.3485 5.9681 18 6 2.1550 -3.9389 7.3072 19 6 2.9843 -4.8856 8.2111 20 8 3.4073 -5.9531 7.3479 21 6 3.4312 -5.5025 5.9884 22 6 1.0550 -4.8128 -0.1709 23 6 0.1212 -4.6379 -1.3702 24 6 0.9441 -4.6255 -2.6599 25 6 1.9418 -3.4663 -2.6171 26 6 2.8756 -3.6411 -1.4179 27 1 -0.4850 0.8400 0.0004 28 1 0.3593 -2.3902 0.0839 29 1 3.7561 -3.0568 1.0479 30 1 3.4559 -4.8112 1.0259 31 1 1.2697 -3.4998 2.2764 32 1 1.6077 -2.7767 4.8506 33 1 1.2204 -4.5123 4.7734 34 1 2.1628 -2.9199 7.6941 35 1 1.1350 -4.3038 7.1874 36 1 2.3655 -5.2753 9.0193 37 1 3.8498 -4.3617 8.6169 38 1 2.7664 -6.1187 5.3830 39 1 4.4467 -5.5592 5.5964 40 1 1.5959 -5.7543 -0.2663 41 1 0.4687 -4.8216 0.7479 42 1 -0.4197 -3.6963 -1.2753 43 1 -0.5899 -5.4635 -1.4005 44 1 0.2790 -4.5004 -3.5143 45 1 1.4851 -5.5670 -2.7549 46 1 1.4009 -2.5247 -2.5222 47 1 2.5279 -3.4571 -3.5361 48 1 3.5864 -2.8153 -1.3874 49 1 3.4169 -4.5825 -1.5126 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115460305.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:52 Heat of formation + Delta-G solvation = -115.101382 kcal Electronic energy + Delta-G solvation = -27228.589728 eV Core-core repulsion = 23574.856110 eV Total energy + Delta-G solvation = -3653.733618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.18919 -40.34889 -39.47640 -35.86423 -35.02183 -34.50813 -32.80344 -31.55358 -30.94194 -30.24063 -28.31880 -26.15665 -25.68194 -23.54491 -23.34965 -22.16919 -21.60172 -20.94613 -19.79346 -19.02233 -18.11359 -17.63127 -17.11451 -16.80067 -16.38680 -16.23746 -15.91830 -15.69660 -15.50893 -15.14772 -14.93377 -14.73402 -14.31457 -14.08267 -13.96989 -13.58037 -13.39724 -13.25904 -13.06087 -12.89469 -12.78343 -12.59896 -12.56011 -12.50639 -12.17665 -12.07745 -11.87955 -11.83375 -11.70619 -11.67006 -11.30840 -11.08978 -10.88236 -10.69745 -10.64035 -10.46135 -9.84429 -8.89489 -7.86736 -5.10882 1.45597 1.47822 1.51645 1.76318 2.40217 2.59711 2.97839 3.45459 3.47665 3.75877 3.82937 3.91485 3.94356 3.99704 4.05137 4.14968 4.28193 4.35666 4.39813 4.47825 4.49190 4.62427 4.67481 4.75337 4.77092 4.78834 4.82226 4.82667 4.91316 4.93637 4.96891 4.98690 5.08610 5.08656 5.18746 5.22559 5.27926 5.47363 5.50166 5.51772 5.60168 5.62436 5.72364 5.81167 6.04869 6.36156 6.73787 7.38645 7.45311 8.18030 8.44746 9.35251 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012637 B = 0.004046 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.217409 B = 6919.105936 C = 8351.746080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.060 4.060 3 Si 0.944 3.056 4 H -0.287 1.287 5 H -0.298 1.298 6 H -0.290 1.290 7 C -0.207 4.207 8 H 0.059 0.941 9 N -0.708 5.708 10 C 0.190 3.810 11 C 0.123 3.877 12 N -0.699 5.699 13 C 0.500 3.500 14 O -0.591 6.591 15 C -0.123 4.123 16 C -0.103 4.103 17 H 0.074 0.926 18 C -0.143 4.143 19 C 0.043 3.957 20 O -0.411 6.411 21 C 0.064 3.936 22 C -0.107 4.107 23 C -0.112 4.112 24 C -0.108 4.108 25 C -0.106 4.106 26 C -0.114 4.114 27 H 0.247 0.753 28 H 0.378 0.622 29 H 0.028 0.972 30 H 0.063 0.937 31 H 0.407 0.593 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.041 0.959 47 H 0.055 0.945 48 H 0.036 0.964 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.471 -11.881 7.771 14.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.253 4.253 3 Si 0.776 3.224 4 H -0.214 1.214 5 H -0.225 1.225 6 H -0.217 1.217 7 C -0.340 4.340 8 H 0.077 0.923 9 N -0.349 5.349 10 C 0.099 3.901 11 C -0.004 4.004 12 N -0.349 5.349 13 C 0.288 3.712 14 O -0.473 6.473 15 C -0.163 4.163 16 C -0.122 4.122 17 H 0.092 0.908 18 C -0.180 4.180 19 C -0.033 4.033 20 O -0.331 6.331 21 C -0.012 4.012 22 C -0.144 4.144 23 C -0.150 4.150 24 C -0.145 4.145 25 C -0.144 4.144 26 C -0.154 4.154 27 H 0.056 0.944 28 H 0.212 0.788 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.243 0.757 32 H 0.128 0.872 33 H 0.138 0.862 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.091 0.909 46 H 0.059 0.941 47 H 0.074 0.926 48 H 0.055 0.945 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.530 -12.140 7.821 14.451 hybrid contribution 0.037 1.969 -0.378 2.006 sum 0.567 -10.170 7.443 12.616 Atomic orbital electron populations 1.69734 1.05706 1.25339 1.60171 1.25113 0.95930 0.99429 1.04806 0.85656 0.77460 0.81773 0.77471 1.21433 1.22467 1.21747 1.19130 0.90568 0.85059 1.39232 0.92296 1.42449 1.05742 0.99883 1.86787 1.20011 0.91732 0.86917 0.91422 1.21677 0.94440 0.99205 0.85073 1.45812 1.13992 1.69814 1.05284 1.21231 0.87830 0.75855 0.86274 1.90641 1.17722 1.50750 1.88144 1.21669 0.98807 1.06132 0.89661 1.22394 0.98286 0.96703 0.94809 0.90780 1.23344 0.99994 1.01857 0.92850 1.23578 0.98055 0.87994 0.93658 1.88356 1.89525 1.37689 1.17568 1.23074 1.00791 0.94417 0.82917 1.21654 0.97092 0.97099 0.98601 1.21437 0.97742 1.01288 0.94528 1.21450 0.97514 0.98188 0.97377 1.21300 0.97440 0.98879 0.96771 1.21778 0.97741 1.00359 0.95508 0.94442 0.78843 0.95346 0.91902 0.75652 0.87185 0.86221 0.88099 0.88601 0.87836 0.91976 0.91468 0.92899 0.90077 0.91742 0.93741 0.90693 0.92281 0.90856 0.94059 0.92626 0.94480 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -53.91 13.07 21.65 0.28 -53.63 16 2 C -0.06 -3.20 5.50 84.86 0.47 -2.74 16 3 Si 0.94 45.08 29.55 68.60 2.03 47.11 16 4 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.21 -10.37 8.70 84.03 0.73 -9.64 16 8 H 0.06 3.03 6.77 -2.91 -0.02 3.01 16 9 N -0.71 -29.91 3.40 -303.35 -1.03 -30.95 16 10 C 0.19 6.38 0.41 3.60 0.00 6.38 16 11 C 0.12 4.26 4.37 86.38 0.38 4.63 16 12 N -0.70 -22.25 5.09 -463.05 -2.36 -24.61 16 13 C 0.50 15.73 7.62 87.66 0.67 16.40 16 14 O -0.59 -22.71 14.89 -3.05 -0.05 -22.76 16 15 C -0.12 -2.75 5.09 29.85 0.15 -2.60 16 16 C -0.10 -2.33 2.59 -9.53 -0.02 -2.35 16 17 H 0.07 1.94 8.06 -2.38 -0.02 1.92 16 18 C -0.14 -2.29 6.62 32.05 0.21 -2.08 16 19 C 0.04 0.77 7.78 72.65 0.57 1.34 16 20 O -0.41 -10.60 11.36 -148.98 -1.69 -12.29 16 21 C 0.06 1.67 6.38 72.45 0.46 2.13 16 22 C -0.11 -2.88 4.65 30.60 0.14 -2.73 16 23 C -0.11 -3.05 5.75 30.59 0.18 -2.87 16 24 C -0.11 -2.84 5.92 30.59 0.18 -2.66 16 25 C -0.11 -3.45 5.77 30.59 0.18 -3.27 16 26 C -0.11 -3.79 4.52 30.59 0.14 -3.65 16 27 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 28 H 0.38 17.20 6.63 -92.70 -0.61 16.59 16 29 H 0.03 1.17 7.50 -2.39 -0.02 1.15 16 30 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.41 12.35 7.39 -92.71 -0.69 11.66 16 32 H 0.11 2.27 8.14 -2.39 -0.02 2.26 16 33 H 0.12 2.05 8.07 -2.39 -0.02 2.04 16 34 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.10 1.28 8.04 -2.39 -0.02 1.26 16 36 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.68 7.76 -2.39 -0.02 1.66 16 39 H 0.05 1.61 7.72 -2.39 -0.02 1.59 16 40 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 41 H 0.06 1.66 7.28 -2.39 -0.02 1.64 16 42 H 0.04 1.49 6.92 -2.39 -0.02 1.47 16 43 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 44 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.04 1.69 7.60 -2.38 -0.02 1.67 16 47 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.04 1.40 7.23 -2.39 -0.02 1.39 16 49 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -63.47 375.20 1.24 -62.23 By element: Atomic # 1 Polarization: 38.97 SS G_CDS: -0.36 Total: 38.60 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 4.43 Total: -3.70 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -3.11 Total: -109.19 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -1.74 Total: -35.05 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -63.47 1.24 -62.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115460305.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.876 kcal (2) G-P(sol) polarization free energy of solvation -63.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds