Wall clock time and date at job start Fri Apr 10 2020 22:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 119.99880 * 2 1 4 4 H 1.48506 * 109.46994 * 269.99802 * 3 2 1 5 5 H 1.48496 * 109.47070 * 29.99729 * 3 2 1 6 6 H 1.48495 * 109.47107 * 150.00176 * 3 2 1 7 7 C 1.38810 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00128 * 359.97438 * 7 2 1 9 9 N 1.36937 * 120.00237 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00303 * 173.40004 * 9 7 2 11 11 C 1.53000 * 109.46874 * 301.11726 * 10 9 7 12 12 N 1.46505 * 109.46923 * 305.24407 * 11 10 9 13 13 C 1.34779 * 119.99591 * 175.77506 * 12 11 10 14 14 O 1.21279 * 120.00328 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99620 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.46823 * 180.02562 * 15 13 12 17 17 H 1.09006 * 110.80435 * 305.70014 * 16 15 13 18 18 C 1.54816 * 110.90574 * 182.07199 * 16 15 13 19 19 C 1.54097 * 104.18871 * 220.92053 * 18 16 15 20 20 O 1.43746 * 107.29141 * 357.96789 * 19 18 16 21 21 C 1.44413 * 107.00360 * 26.49230 * 20 19 18 22 22 C 1.53003 * 109.46810 * 61.11358 * 10 9 7 23 23 C 1.53000 * 109.47102 * 60.00507 * 22 10 9 24 24 C 1.52998 * 109.47534 * 59.99608 * 23 22 10 25 25 C 1.53004 * 109.46743 * 300.00145 * 24 23 22 26 26 C 1.52996 * 109.47200 * 60.00207 * 25 24 23 27 27 H 0.97000 * 120.00238 * 0.02562 * 1 2 3 28 28 H 0.97006 * 119.99921 * 353.39765 * 9 7 2 29 29 H 1.08997 * 109.47014 * 185.25187 * 11 10 9 30 30 H 1.08996 * 109.47436 * 65.24354 * 11 10 9 31 31 H 0.96997 * 120.00296 * 355.77261 * 12 11 10 32 32 H 1.09004 * 109.47156 * 300.00018 * 15 13 12 33 33 H 1.09002 * 109.47007 * 59.99792 * 15 13 12 34 34 H 1.09002 * 110.48884 * 339.60010 * 18 16 15 35 35 H 1.09007 * 110.48386 * 102.24391 * 18 16 15 36 36 H 1.08989 * 109.87945 * 117.39441 * 19 18 16 37 37 H 1.09008 * 109.87871 * 238.39853 * 19 18 16 38 38 H 1.08999 * 110.65741 * 201.47764 * 21 20 19 39 39 H 1.09000 * 110.60339 * 78.46112 * 21 20 19 40 40 H 1.09006 * 109.46359 * 179.97438 * 22 10 9 41 41 H 1.09000 * 109.47235 * 299.99789 * 22 10 9 42 42 H 1.09006 * 109.46770 * 299.99474 * 23 22 10 43 43 H 1.08997 * 109.46862 * 180.02562 * 23 22 10 44 44 H 1.08993 * 109.47083 * 179.97438 * 24 23 22 45 45 H 1.08996 * 109.46718 * 59.99942 * 24 23 22 46 46 H 1.08996 * 109.47347 * 299.99412 * 25 24 23 47 47 H 1.09004 * 109.46500 * 179.97438 * 25 24 23 48 48 H 1.09009 * 109.47151 * 179.97438 * 26 25 24 49 49 H 1.08996 * 109.47206 * 59.99715 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4626 0.1453 11 6 3.7209 -3.1305 1.4650 12 7 3.9376 -2.1929 2.5698 13 6 3.5803 -2.5349 3.8236 14 8 3.0792 -3.6184 4.0372 15 6 3.8026 -1.5702 4.9599 16 6 3.3141 -2.1997 6.2661 17 1 2.2785 -2.5273 6.1744 18 6 3.4795 -1.2152 7.4494 19 6 3.9860 -2.0975 8.6068 20 8 4.0434 -3.4489 8.1203 21 6 4.2307 -3.3754 6.6903 22 6 3.7640 -3.3918 -1.0194 23 6 4.1551 -2.7238 -2.3392 24 6 5.6591 -2.4430 -2.3427 25 6 6.0070 -1.5137 -1.1780 26 6 5.6160 -2.1817 0.1417 27 1 -0.4850 0.8400 -0.0004 28 1 3.8646 -0.3676 -0.0959 29 1 4.3330 -4.0194 1.6177 30 1 2.6693 -3.4148 1.4307 31 1 4.3381 -1.3262 2.3989 32 1 4.8657 -1.3436 5.0415 33 1 3.2488 -0.6509 4.7697 34 1 4.2130 -0.4464 7.2065 35 1 2.5215 -0.7625 7.7057 36 1 4.9797 -1.7715 8.9138 37 1 3.2981 -2.0336 9.4500 38 1 3.9123 -4.3019 6.2126 39 1 5.2713 -3.1566 6.4505 40 1 4.3094 -4.3294 -0.9115 41 1 2.6925 -3.5919 -1.0169 42 1 3.6101 -1.7860 -2.4472 43 1 3.9067 -3.3856 -3.1688 44 1 5.9377 -1.9676 -3.2831 45 1 6.2040 -3.3808 -2.2346 46 1 5.4621 -0.5760 -1.2861 47 1 7.0786 -1.3140 -1.1803 48 1 5.8643 -1.5198 0.9715 49 1 6.1610 -3.1194 0.2498 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115460306.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:56 Heat of formation + Delta-G solvation = -92.545437 kcal Electronic energy + Delta-G solvation = -27355.171701 eV Core-core repulsion = 23702.416182 eV Total energy + Delta-G solvation = -3652.755519 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.98795 -39.23474 -38.27152 -34.56729 -33.46313 -33.30533 -31.36939 -30.40451 -29.99691 -29.20724 -27.21577 -24.92872 -23.49853 -22.74540 -22.27157 -20.97557 -20.38587 -19.78184 -18.33797 -17.80542 -17.14803 -16.17005 -15.95761 -15.54241 -15.14816 -15.07523 -14.66799 -14.42773 -14.24600 -13.76886 -13.65717 -13.51953 -13.23171 -12.75925 -12.68007 -12.36594 -12.23551 -12.07788 -11.84343 -11.69664 -11.67120 -11.38573 -11.23934 -11.02856 -10.89715 -10.83593 -10.67095 -10.66606 -10.41602 -10.05429 -9.94131 -9.72002 -9.70091 -9.41854 -9.38045 -8.94234 -8.44795 -7.34358 -5.81083 -3.18127 3.06288 3.26212 3.30355 3.38394 3.61448 3.96897 4.48401 4.51601 4.71024 4.83300 4.98328 5.00198 5.07541 5.09207 5.11571 5.25541 5.28554 5.42840 5.49739 5.51134 5.59274 5.60580 5.64807 5.66789 5.76940 5.80865 5.86181 5.86989 5.95517 6.01654 6.03391 6.08627 6.17529 6.23279 6.28591 6.40806 6.48137 6.54552 6.67707 6.70061 6.82228 6.90134 6.99652 7.04698 7.94248 8.01753 8.37403 8.68851 9.14458 9.85977 10.05340 11.37092 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013527 B = 0.004191 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.444587 B = 6679.580282 C = 7816.310162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.877 3.123 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.234 4.234 8 H 0.091 0.909 9 N -0.735 5.735 10 C 0.197 3.803 11 C 0.119 3.881 12 N -0.702 5.702 13 C 0.509 3.491 14 O -0.552 6.552 15 C -0.133 4.133 16 C -0.103 4.103 17 H 0.095 0.905 18 C -0.155 4.155 19 C 0.047 3.953 20 O -0.382 6.382 21 C 0.055 3.945 22 C -0.116 4.116 23 C -0.110 4.110 24 C -0.114 4.114 25 C -0.116 4.116 26 C -0.118 4.118 27 H 0.258 0.742 28 H 0.360 0.640 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.398 0.602 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.054 0.946 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.048 0.952 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.064 0.936 47 H 0.052 0.948 48 H 0.057 0.943 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.640 -1.958 7.084 15.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.187 4.187 3 Si 0.708 3.292 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.364 4.364 8 H 0.108 0.892 9 N -0.379 5.379 10 C 0.106 3.894 11 C -0.007 4.007 12 N -0.351 5.351 13 C 0.295 3.705 14 O -0.430 6.430 15 C -0.173 4.173 16 C -0.122 4.122 17 H 0.114 0.886 18 C -0.192 4.192 19 C -0.030 4.030 20 O -0.301 6.301 21 C -0.021 4.021 22 C -0.156 4.156 23 C -0.148 4.148 24 C -0.152 4.152 25 C -0.154 4.154 26 C -0.156 4.156 27 H 0.069 0.931 28 H 0.194 0.806 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.232 0.768 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.123 0.877 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.015 -2.973 7.367 15.248 hybrid contribution 0.627 2.104 -0.342 2.221 sum 13.642 -0.869 7.025 15.369 Atomic orbital electron populations 1.69688 1.05096 1.25639 1.57433 1.24644 0.95052 0.96838 1.02205 0.86688 0.79125 0.85670 0.77741 1.21262 1.22016 1.20444 1.18924 0.80390 0.94480 1.42575 0.89165 1.42799 1.03970 1.02439 1.88678 1.19788 0.89931 0.87911 0.91775 1.21787 1.01801 0.90775 0.86373 1.45725 1.62521 1.20173 1.06703 1.20436 0.78148 0.87882 0.84038 1.90655 1.44121 1.23938 1.84331 1.21654 1.03085 0.99533 0.93049 1.22451 1.02015 0.95026 0.92682 0.88619 1.23033 1.02549 0.98628 0.95038 1.23111 1.00295 0.82629 0.96976 1.88870 1.94191 1.25245 1.21789 1.23687 0.97794 1.00323 0.80320 1.21810 1.01763 0.96988 0.95082 1.21377 0.94948 1.01851 0.96596 1.21498 0.97276 0.98862 0.97566 1.21480 0.99650 0.99380 0.94848 1.21752 0.96031 1.00524 0.97272 0.93135 0.80587 0.93109 0.90936 0.76783 0.89219 0.88380 0.90521 0.90259 0.92713 0.90116 0.87709 0.92742 0.93387 0.91251 0.90361 0.93334 0.92897 0.92829 0.91700 0.92933 0.92473 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.04 13.97 55.49 0.78 -27.26 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 20.54 27.67 -169.99 -4.70 15.84 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.28 -5.92 6.62 56.52 0.37 -5.54 16 7 C -0.23 -5.89 9.20 -15.06 -0.14 -6.03 16 8 H 0.09 2.54 6.99 -52.49 -0.37 2.17 16 9 N -0.74 -14.75 3.36 -47.23 -0.16 -14.91 16 10 C 0.20 3.26 0.40 -131.82 -0.05 3.20 16 11 C 0.12 2.06 4.30 -4.04 -0.02 2.04 16 12 N -0.70 -11.39 5.14 -60.29 -0.31 -11.70 16 13 C 0.51 8.36 7.64 -10.98 -0.08 8.27 16 14 O -0.55 -10.84 14.75 5.56 0.08 -10.75 16 15 C -0.13 -1.65 5.10 -27.88 -0.14 -1.79 16 16 C -0.10 -1.29 2.68 -88.61 -0.24 -1.53 16 17 H 0.10 1.40 7.97 -51.93 -0.41 0.99 16 18 C -0.15 -1.53 6.60 -25.20 -0.17 -1.70 16 19 C 0.05 0.48 7.70 37.73 0.29 0.77 16 20 O -0.38 -5.23 11.52 -35.23 -0.41 -5.64 16 21 C 0.06 0.72 6.56 38.21 0.25 0.97 16 22 C -0.12 -1.90 4.58 -26.73 -0.12 -2.02 16 23 C -0.11 -1.70 5.76 -26.73 -0.15 -1.86 16 24 C -0.11 -1.49 5.92 -26.73 -0.16 -1.65 16 25 C -0.12 -1.52 5.75 -26.73 -0.15 -1.68 16 26 C -0.12 -1.59 4.66 -26.73 -0.12 -1.71 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.36 7.20 4.43 -40.82 -0.18 7.02 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.52 7.54 -51.93 -0.39 1.13 16 31 H 0.40 5.99 7.27 -40.82 -0.30 5.69 16 32 H 0.09 0.88 8.05 -51.93 -0.42 0.46 16 33 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.08 0.64 7.86 -51.93 -0.41 0.23 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.48 8.14 -51.94 -0.42 0.06 16 37 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 38 H 0.10 1.54 7.30 -51.93 -0.38 1.16 16 39 H 0.05 0.64 7.98 -51.93 -0.41 0.22 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.07 1.30 7.21 -51.93 -0.37 0.93 16 42 H 0.08 1.44 7.60 -51.93 -0.39 1.04 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.96 6.84 -51.93 -0.36 0.60 16 47 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.06 0.73 7.11 -51.92 -0.37 0.36 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 371.63 15.07 5.60 5.60 Total: -1.00 -30.72 371.63 -8.80 -39.53 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -8.58 Total: 13.86 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -1.11 Total: -4.57 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.31 Total: -53.86 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.32 Total: -16.39 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.70 Total: 15.84 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.72 -8.80 -39.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115460306.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.017 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds