Wall clock time and date at job start Fri Apr 10 2020 22:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00280 * 2 1 4 4 H 1.48500 * 109.47189 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46873 * 299.99996 * 3 2 1 6 6 H 1.48493 * 109.47220 * 59.99479 * 3 2 1 7 7 C 1.38820 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99951 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99693 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99703 * 174.24692 * 9 7 2 11 11 C 1.53006 * 109.47391 * 62.82197 * 10 9 7 12 12 N 1.46504 * 109.46902 * 54.62342 * 11 10 9 13 13 C 1.34773 * 119.99720 * 176.63183 * 12 11 10 14 14 O 1.21284 * 120.00288 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00186 * 180.02562 * 13 12 11 16 16 H 1.08999 * 109.48687 * 304.97407 * 15 13 12 17 17 C 1.53089 * 109.48200 * 64.99705 * 15 13 12 18 18 C 1.53174 * 109.16654 * 177.59559 * 17 15 13 19 19 C 1.53182 * 109.10898 * 302.97751 * 18 17 15 20 20 C 1.53279 * 109.06335 * 56.93816 * 19 18 17 21 21 O 1.42899 * 109.46191 * 302.44751 * 20 19 18 22 22 C 1.53001 * 109.47014 * 182.81618 * 10 9 7 23 23 C 1.53007 * 109.47033 * 60.00342 * 22 10 9 24 24 C 1.52995 * 109.46932 * 59.99514 * 23 22 10 25 25 C 1.52998 * 109.47854 * 300.00428 * 24 23 22 26 26 C 1.52996 * 109.47588 * 302.81906 * 10 9 7 27 27 H 0.97004 * 119.99804 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00139 * 354.24201 * 9 7 2 29 29 H 1.09000 * 109.46625 * 294.62817 * 11 10 9 30 30 H 1.08994 * 109.47398 * 174.62494 * 11 10 9 31 31 H 0.96996 * 120.00135 * 356.63642 * 12 11 10 32 32 H 1.09002 * 109.52037 * 57.68953 * 17 15 13 33 33 H 1.08997 * 109.57607 * 297.53392 * 17 15 13 34 34 H 1.09005 * 109.54519 * 62.88703 * 18 17 15 35 35 H 1.08997 * 109.54695 * 183.06770 * 18 17 15 36 36 H 1.09002 * 109.52508 * 176.93116 * 19 18 17 37 37 H 1.09000 * 109.52249 * 297.11669 * 19 18 17 38 38 H 1.08997 * 109.45896 * 182.45060 * 20 19 18 39 39 H 1.08997 * 109.46964 * 62.45049 * 20 19 18 40 40 H 1.09006 * 109.47335 * 179.97438 * 22 10 9 41 41 H 1.08996 * 109.47961 * 300.00385 * 22 10 9 42 42 H 1.08996 * 109.46585 * 299.99942 * 23 22 10 43 43 H 1.08994 * 109.47204 * 179.97438 * 23 22 10 44 44 H 1.09006 * 109.47280 * 180.02562 * 24 23 22 45 45 H 1.09006 * 109.47183 * 60.00729 * 24 23 22 46 46 H 1.09005 * 109.46448 * 300.00415 * 25 24 23 47 47 H 1.08992 * 109.47693 * 180.02562 * 25 24 23 48 48 H 1.09004 * 109.46821 * 59.99895 * 26 10 9 49 49 H 1.08996 * 109.47570 * 180.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0525 -3.6536 -0.1261 11 6 2.9857 -3.8280 1.0738 12 7 2.2141 -3.7111 2.3136 13 6 2.8183 -3.8986 3.5036 14 8 4.0010 -4.1638 3.5482 15 6 2.0245 -3.7789 4.7790 16 1 1.5316 -2.8072 4.8107 17 6 0.9704 -4.8879 4.8303 18 6 0.2082 -4.7963 6.1558 19 6 1.2051 -4.8902 7.3150 20 6 2.2517 -3.7802 7.1665 21 8 2.9017 -3.9051 5.9001 22 6 1.0548 -4.8128 -0.1688 23 6 0.1216 -4.6386 -1.3687 24 6 0.9453 -4.6267 -2.6579 25 6 1.9431 -3.4676 -2.6152 26 6 2.8762 -3.6419 -1.4153 27 1 -0.4850 0.8401 -0.0004 28 1 0.3592 -2.3902 0.0844 29 1 3.7553 -3.0564 1.0507 30 1 3.4551 -4.8108 1.0293 31 1 1.2683 -3.4987 2.2781 32 1 1.4598 -5.8592 4.7579 33 1 0.2738 -4.7683 4.0006 34 1 -0.3217 -3.8451 6.2068 35 1 -0.5069 -5.6161 6.2227 36 1 0.6764 -4.7712 8.2608 37 1 1.6992 -5.8616 7.2928 38 1 2.9895 -3.8678 7.9640 39 1 1.7620 -2.8085 7.2295 40 1 1.5957 -5.7545 -0.2635 41 1 0.4680 -4.8213 0.7496 42 1 -0.4192 -3.6969 -1.2745 43 1 -0.5888 -5.4646 -1.3994 44 1 0.2806 -4.5021 -3.5128 45 1 1.4862 -5.5684 -2.7522 46 1 1.4021 -2.5260 -2.5210 47 1 2.5296 -3.4589 -3.5338 48 1 3.5870 -2.8161 -1.3848 49 1 3.4168 -4.5837 -1.5097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115483629.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:00 Heat of formation + Delta-G solvation = -97.063982 kcal Electronic energy + Delta-G solvation = -27700.830713 eV Core-core repulsion = 24047.879255 eV Total energy + Delta-G solvation = -3652.951458 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.06785 -38.98992 -37.83691 -34.47114 -33.73784 -33.21249 -31.75015 -30.81528 -30.23449 -28.56801 -26.29537 -24.52434 -23.88439 -23.79708 -22.11621 -20.71505 -20.37391 -19.87024 -18.35971 -17.35525 -17.02023 -16.42742 -15.67961 -15.33515 -14.94091 -14.75539 -14.55469 -14.32618 -14.14173 -13.97400 -13.69556 -13.58256 -13.06775 -12.85776 -12.74064 -12.64098 -12.00566 -11.88700 -11.70575 -11.56610 -11.49015 -11.32499 -11.17593 -11.11019 -10.89897 -10.77355 -10.55087 -10.53462 -10.14738 -10.04185 -9.80792 -9.63772 -9.55465 -9.33051 -9.21176 -8.88775 -8.41999 -7.02317 -5.82311 -3.10933 3.02943 3.22197 3.40323 3.48635 3.49468 4.20585 4.55681 4.66630 4.68598 4.73630 4.85968 5.08873 5.17841 5.21592 5.25740 5.28626 5.36995 5.46899 5.56058 5.59172 5.60714 5.66491 5.73134 5.76995 5.82785 5.85606 5.90837 5.97853 6.04163 6.11784 6.12836 6.16552 6.19956 6.29744 6.44890 6.50782 6.59765 6.79272 6.80779 6.81665 6.98192 7.04587 7.17152 7.20590 7.71468 8.06244 8.35987 8.71229 9.48803 10.01352 10.38007 11.39706 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011735 B = 0.004732 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.468899 B = 5915.196448 C = 7163.065012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.009 4.009 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.228 4.228 8 H 0.070 0.930 9 N -0.710 5.710 10 C 0.191 3.809 11 C 0.117 3.883 12 N -0.697 5.697 13 C 0.516 3.484 14 O -0.537 6.537 15 C 0.074 3.926 16 H 0.084 0.916 17 C -0.144 4.144 18 C -0.121 4.121 19 C -0.157 4.157 20 C 0.058 3.942 21 O -0.354 6.354 22 C -0.113 4.113 23 C -0.115 4.115 24 C -0.112 4.112 25 C -0.109 4.109 26 C -0.114 4.114 27 H 0.253 0.747 28 H 0.384 0.616 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.403 0.597 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.048 0.952 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.083 0.917 47 H 0.043 0.957 48 H 0.064 0.936 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.101 -11.496 6.996 13.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.730 3.270 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.359 4.359 8 H 0.088 0.912 9 N -0.352 5.352 10 C 0.099 3.901 11 C -0.009 4.009 12 N -0.349 5.349 13 C 0.300 3.700 14 O -0.414 6.414 15 C 0.013 3.987 16 H 0.102 0.898 17 C -0.182 4.182 18 C -0.159 4.159 19 C -0.195 4.195 20 C -0.019 4.019 21 O -0.272 6.272 22 C -0.151 4.151 23 C -0.153 4.153 24 C -0.150 4.150 25 C -0.147 4.147 26 C -0.154 4.154 27 H 0.063 0.937 28 H 0.219 0.781 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.238 0.762 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.102 0.898 47 H 0.062 0.938 48 H 0.083 0.917 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.932 -11.569 6.976 13.542 hybrid contribution -0.582 1.270 0.083 1.399 sum -1.513 -10.299 7.059 12.577 Atomic orbital electron populations 1.69653 1.04956 1.25435 1.57962 1.24659 0.95375 0.97392 1.03025 0.86239 0.79047 0.84607 0.77068 1.20610 1.22005 1.22088 1.19132 0.91011 0.83757 1.42020 0.91239 1.42453 1.06101 0.99450 1.87158 1.19823 0.91258 0.87538 0.91498 1.21881 0.95050 1.00053 0.83939 1.45650 1.13937 1.70339 1.04945 1.19985 0.87765 0.77685 0.84554 1.90673 1.15622 1.47888 1.87220 1.21911 0.90665 0.99484 0.86661 0.89832 1.22117 0.97700 0.99515 0.98865 1.21589 0.97684 1.02678 0.93936 1.22246 0.97797 1.00524 0.98934 1.22665 0.95924 0.97325 0.85969 1.88056 1.33071 1.93467 1.12637 1.21688 0.97618 0.97766 0.98038 1.21473 0.97500 1.01826 0.94496 1.21470 0.97914 0.98435 0.97170 1.21373 0.97170 0.99738 0.96423 1.21787 0.98073 1.00127 0.95442 0.93688 0.78080 0.91780 0.92859 0.76169 0.90592 0.90064 0.91396 0.91134 0.90853 0.91000 0.88646 0.93035 0.92271 0.92495 0.90712 0.93323 0.93058 0.93250 0.89817 0.93790 0.91738 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.91 13.07 55.49 0.73 -25.19 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.90 21.78 29.55 -169.99 -5.02 16.75 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 7 C -0.23 -5.66 8.70 -15.05 -0.13 -5.79 16 8 H 0.07 1.77 6.77 -52.49 -0.36 1.41 16 9 N -0.71 -15.01 3.40 -47.23 -0.16 -15.17 16 10 C 0.19 3.33 0.41 -131.82 -0.05 3.27 16 11 C 0.12 2.11 4.37 -4.04 -0.02 2.10 16 12 N -0.70 -11.99 5.06 -60.29 -0.30 -12.30 16 13 C 0.52 9.41 7.18 -10.99 -0.08 9.33 16 14 O -0.54 -11.91 16.51 -14.30 -0.24 -12.15 16 15 C 0.07 1.10 3.05 -27.84 -0.09 1.02 16 16 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 17 C -0.14 -1.67 5.37 -26.60 -0.14 -1.81 16 18 C -0.12 -1.14 6.02 -26.55 -0.16 -1.30 16 19 C -0.16 -1.45 6.15 -26.49 -0.16 -1.61 16 20 C 0.06 0.65 6.85 37.30 0.26 0.90 16 21 O -0.35 -5.60 9.94 -55.09 -0.55 -6.15 16 22 C -0.11 -1.67 4.65 -26.73 -0.12 -1.80 16 23 C -0.12 -1.70 5.75 -26.73 -0.15 -1.85 16 24 C -0.11 -1.63 5.92 -26.73 -0.16 -1.78 16 25 C -0.11 -1.83 5.77 -26.73 -0.15 -1.98 16 26 C -0.11 -1.96 4.52 -26.73 -0.12 -2.08 16 27 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.38 8.71 6.63 -40.82 -0.27 8.44 16 29 H 0.06 1.33 7.50 -51.93 -0.39 0.94 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.40 6.56 7.24 -40.82 -0.30 6.27 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.86 7.99 -51.93 -0.41 0.44 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.81 7.28 -51.93 -0.38 0.43 16 42 H 0.07 1.28 6.92 -51.93 -0.36 0.92 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 1.69 7.60 -51.93 -0.39 1.30 16 47 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.06 1.22 7.23 -51.93 -0.38 0.84 16 49 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 374.67 15.07 5.65 5.65 Total: -1.00 -29.94 374.67 -10.00 -39.93 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -8.71 Total: 12.33 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -1.38 Total: -3.71 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.26 Total: -52.65 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.78 Total: -18.29 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.94 -10.00 -39.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115483629.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.132 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds