Wall clock time and date at job start Fri Apr 10 2020 22:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00280 * 2 1 4 4 H 1.48500 * 109.47189 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46873 * 299.99996 * 3 2 1 6 6 H 1.48493 * 109.47220 * 59.99479 * 3 2 1 7 7 C 1.38820 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99951 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99693 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99703 * 174.24692 * 9 7 2 11 11 C 1.53006 * 109.47391 * 62.82197 * 10 9 7 12 12 N 1.46504 * 109.46902 * 54.62342 * 11 10 9 13 13 C 1.34773 * 119.99720 * 176.63183 * 12 11 10 14 14 O 1.21284 * 120.00288 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00186 * 180.02562 * 13 12 11 16 16 H 1.08999 * 109.48687 * 304.97407 * 15 13 12 17 17 C 1.53089 * 109.48200 * 64.99705 * 15 13 12 18 18 C 1.53174 * 109.16654 * 177.59559 * 17 15 13 19 19 C 1.53182 * 109.10898 * 302.97751 * 18 17 15 20 20 C 1.53279 * 109.06335 * 56.93816 * 19 18 17 21 21 O 1.42899 * 109.46191 * 302.44751 * 20 19 18 22 22 C 1.53001 * 109.47014 * 182.81618 * 10 9 7 23 23 C 1.53007 * 109.47033 * 60.00342 * 22 10 9 24 24 C 1.52995 * 109.46932 * 59.99514 * 23 22 10 25 25 C 1.52998 * 109.47854 * 300.00428 * 24 23 22 26 26 C 1.52996 * 109.47588 * 302.81906 * 10 9 7 27 27 H 0.97004 * 119.99804 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00139 * 354.24201 * 9 7 2 29 29 H 1.09000 * 109.46625 * 294.62817 * 11 10 9 30 30 H 1.08994 * 109.47398 * 174.62494 * 11 10 9 31 31 H 0.96996 * 120.00135 * 356.63642 * 12 11 10 32 32 H 1.09002 * 109.52037 * 57.68953 * 17 15 13 33 33 H 1.08997 * 109.57607 * 297.53392 * 17 15 13 34 34 H 1.09005 * 109.54519 * 62.88703 * 18 17 15 35 35 H 1.08997 * 109.54695 * 183.06770 * 18 17 15 36 36 H 1.09002 * 109.52508 * 176.93116 * 19 18 17 37 37 H 1.09000 * 109.52249 * 297.11669 * 19 18 17 38 38 H 1.08997 * 109.45896 * 182.45060 * 20 19 18 39 39 H 1.08997 * 109.46964 * 62.45049 * 20 19 18 40 40 H 1.09006 * 109.47335 * 179.97438 * 22 10 9 41 41 H 1.08996 * 109.47961 * 300.00385 * 22 10 9 42 42 H 1.08996 * 109.46585 * 299.99942 * 23 22 10 43 43 H 1.08994 * 109.47204 * 179.97438 * 23 22 10 44 44 H 1.09006 * 109.47280 * 180.02562 * 24 23 22 45 45 H 1.09006 * 109.47183 * 60.00729 * 24 23 22 46 46 H 1.09005 * 109.46448 * 300.00415 * 25 24 23 47 47 H 1.08992 * 109.47693 * 180.02562 * 25 24 23 48 48 H 1.09004 * 109.46821 * 59.99895 * 26 10 9 49 49 H 1.08996 * 109.47570 * 180.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0525 -3.6536 -0.1261 11 6 2.9857 -3.8280 1.0738 12 7 2.2141 -3.7111 2.3136 13 6 2.8183 -3.8986 3.5036 14 8 4.0010 -4.1638 3.5482 15 6 2.0245 -3.7789 4.7790 16 1 1.5316 -2.8072 4.8107 17 6 0.9704 -4.8879 4.8303 18 6 0.2082 -4.7963 6.1558 19 6 1.2051 -4.8902 7.3150 20 6 2.2517 -3.7802 7.1665 21 8 2.9017 -3.9051 5.9001 22 6 1.0548 -4.8128 -0.1688 23 6 0.1216 -4.6386 -1.3687 24 6 0.9453 -4.6267 -2.6579 25 6 1.9431 -3.4676 -2.6152 26 6 2.8762 -3.6419 -1.4153 27 1 -0.4850 0.8401 -0.0004 28 1 0.3592 -2.3902 0.0844 29 1 3.7553 -3.0564 1.0507 30 1 3.4551 -4.8108 1.0293 31 1 1.2683 -3.4987 2.2781 32 1 1.4598 -5.8592 4.7579 33 1 0.2738 -4.7683 4.0006 34 1 -0.3217 -3.8451 6.2068 35 1 -0.5069 -5.6161 6.2227 36 1 0.6764 -4.7712 8.2608 37 1 1.6992 -5.8616 7.2928 38 1 2.9895 -3.8678 7.9640 39 1 1.7620 -2.8085 7.2295 40 1 1.5957 -5.7545 -0.2635 41 1 0.4680 -4.8213 0.7496 42 1 -0.4192 -3.6969 -1.2745 43 1 -0.5888 -5.4646 -1.3994 44 1 0.2806 -4.5021 -3.5128 45 1 1.4862 -5.5684 -2.7522 46 1 1.4021 -2.5260 -2.5210 47 1 2.5296 -3.4589 -3.5338 48 1 3.5870 -2.8161 -1.3848 49 1 3.4168 -4.5837 -1.5097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115483629.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:00 Heat of formation + Delta-G solvation = -114.857279 kcal Electronic energy + Delta-G solvation = -27701.602288 eV Core-core repulsion = 24047.879255 eV Total energy + Delta-G solvation = -3653.723033 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.35383 -40.28926 -39.15959 -35.91366 -35.13779 -34.54759 -33.09581 -32.14795 -31.53621 -30.22095 -27.48627 -25.77203 -25.62892 -24.82467 -23.43334 -21.92097 -21.49160 -21.13971 -19.81835 -19.06892 -18.46785 -17.64719 -16.85745 -16.71409 -16.33655 -16.08681 -15.78993 -15.72060 -15.42826 -15.30666 -15.06265 -14.88270 -14.42353 -14.28595 -13.87830 -13.61434 -13.40680 -13.38438 -13.24750 -12.90259 -12.83837 -12.59776 -12.52138 -12.46133 -12.18290 -12.02832 -11.94642 -11.86684 -11.67216 -11.40640 -11.30790 -11.07659 -10.84006 -10.69699 -10.64713 -10.44923 -9.93298 -8.90274 -7.87925 -5.11781 1.43018 1.47681 1.53057 1.59876 1.97187 2.58340 3.09023 3.45137 3.65257 3.77006 3.82175 3.90573 3.93854 4.02080 4.03139 4.07334 4.15043 4.20807 4.40964 4.49005 4.49606 4.62852 4.68416 4.75997 4.77772 4.80629 4.82942 4.87164 4.92119 4.97535 5.02811 5.07440 5.08182 5.14234 5.19671 5.23826 5.36221 5.45233 5.50512 5.52643 5.57593 5.62671 5.69170 5.82538 6.12532 6.35705 6.64629 7.27527 7.44832 8.16978 8.43893 9.34523 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011735 B = 0.004732 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.468899 B = 5915.196448 C = 7163.065012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.061 4.061 3 Si 0.943 3.057 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.300 1.300 7 C -0.205 4.205 8 H 0.060 0.940 9 N -0.708 5.708 10 C 0.190 3.810 11 C 0.122 3.878 12 N -0.689 5.689 13 C 0.510 3.490 14 O -0.583 6.583 15 C 0.077 3.923 16 H 0.088 0.912 17 C -0.138 4.138 18 C -0.119 4.119 19 C -0.152 4.152 20 C 0.048 3.952 21 O -0.389 6.389 22 C -0.107 4.107 23 C -0.112 4.112 24 C -0.108 4.108 25 C -0.106 4.106 26 C -0.114 4.114 27 H 0.247 0.753 28 H 0.378 0.622 29 H 0.030 0.970 30 H 0.066 0.934 31 H 0.408 0.592 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.044 0.956 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.073 0.927 46 H 0.041 0.959 47 H 0.056 0.944 48 H 0.037 0.963 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.098 -13.689 7.522 15.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.254 4.254 3 Si 0.775 3.225 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.228 1.228 7 C -0.338 4.338 8 H 0.078 0.922 9 N -0.348 5.348 10 C 0.099 3.901 11 C -0.004 4.004 12 N -0.341 5.341 13 C 0.296 3.704 14 O -0.463 6.463 15 C 0.016 3.984 16 H 0.106 0.894 17 C -0.176 4.176 18 C -0.157 4.157 19 C -0.190 4.190 20 C -0.028 4.028 21 O -0.308 6.308 22 C -0.145 4.145 23 C -0.150 4.150 24 C -0.145 4.145 25 C -0.144 4.144 26 C -0.154 4.154 27 H 0.056 0.944 28 H 0.212 0.788 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.245 0.755 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.125 0.875 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.060 0.940 47 H 0.074 0.926 48 H 0.056 0.944 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.927 -13.784 7.500 15.810 hybrid contribution -0.174 1.900 -0.074 1.909 sum -2.101 -11.884 7.426 14.170 Atomic orbital electron populations 1.69744 1.05672 1.25192 1.60351 1.25108 0.95955 0.99414 1.04878 0.85520 0.78181 0.82409 0.76361 1.20524 1.22519 1.22755 1.19213 0.90619 0.85043 1.38879 0.92238 1.42463 1.05776 0.99872 1.86735 1.20020 0.91750 0.87026 0.91256 1.21772 0.94548 0.99511 0.84576 1.45619 1.14036 1.69726 1.04683 1.20709 0.87476 0.76422 0.85774 1.90640 1.17656 1.50056 1.87934 1.21900 0.90542 1.01010 0.84923 0.89428 1.22107 0.96925 0.97648 1.00905 1.21625 0.97729 1.03876 0.92431 1.22224 0.97250 0.99346 1.00151 1.22966 0.96922 0.98654 0.84262 1.88006 1.34824 1.93802 1.14217 1.21667 0.97087 0.97065 0.98690 1.21435 0.97724 1.01337 0.94456 1.21452 0.97505 0.98191 0.97376 1.21299 0.97428 0.98925 0.96708 1.21775 0.97754 1.00466 0.95364 0.94430 0.78765 0.95172 0.91593 0.75474 0.91254 0.88967 0.90769 0.89102 0.88264 0.91441 0.87485 0.92279 0.89919 0.91701 0.93709 0.90592 0.92265 0.90824 0.94010 0.92565 0.94439 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.33 13.07 21.65 0.28 -54.05 16 2 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 3 Si 0.94 45.76 29.55 68.60 2.03 47.79 16 4 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 7 C -0.21 -10.38 8.70 84.03 0.73 -9.64 16 8 H 0.06 3.12 6.77 -2.91 -0.02 3.10 16 9 N -0.71 -30.17 3.40 -303.34 -1.03 -31.20 16 10 C 0.19 6.47 0.41 3.61 0.00 6.47 16 11 C 0.12 4.40 4.37 86.38 0.38 4.77 16 12 N -0.69 -23.52 5.06 -463.05 -2.34 -25.86 16 13 C 0.51 18.69 7.18 87.66 0.63 19.32 16 14 O -0.58 -26.38 16.51 15.94 0.26 -26.12 16 15 C 0.08 2.25 3.05 29.88 0.09 2.34 16 16 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 17 C -0.14 -2.94 5.37 30.68 0.16 -2.77 16 18 C -0.12 -1.90 6.02 30.71 0.18 -1.71 16 19 C -0.15 -2.40 6.15 30.75 0.19 -2.21 16 20 C 0.05 1.00 6.85 72.08 0.49 1.49 16 21 O -0.39 -12.19 9.94 -130.00 -1.29 -13.49 16 22 C -0.11 -2.89 4.65 30.60 0.14 -2.75 16 23 C -0.11 -3.01 5.75 30.60 0.18 -2.83 16 24 C -0.11 -2.81 5.92 30.59 0.18 -2.63 16 25 C -0.11 -3.43 5.77 30.59 0.18 -3.25 16 26 C -0.11 -3.79 4.52 30.59 0.14 -3.65 16 27 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 28 H 0.38 17.28 6.63 -92.71 -0.61 16.67 16 29 H 0.03 1.29 7.50 -2.39 -0.02 1.27 16 30 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.41 13.02 7.24 -92.71 -0.67 12.35 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.09 1.74 7.99 -2.39 -0.02 1.72 16 34 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.06 1.66 7.28 -2.39 -0.02 1.64 16 42 H 0.04 1.49 6.92 -2.39 -0.02 1.47 16 43 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 44 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 45 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 46 H 0.04 1.70 7.60 -2.38 -0.02 1.68 16 47 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.04 1.43 7.23 -2.38 -0.02 1.41 16 49 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -66.86 374.67 1.70 -65.16 By element: Atomic # 1 Polarization: 38.00 SS G_CDS: -0.35 Total: 37.65 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 4.14 Total: 0.11 kcal Atomic # 7 Polarization: -108.02 SS G_CDS: -3.09 Total: -111.11 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -1.03 Total: -39.60 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -66.86 1.70 -65.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115483629.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.694 kcal (2) G-P(sol) polarization free energy of solvation -66.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds