Wall clock time and date at job start Fri Apr 10 2020 22:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00310 * 2 1 4 4 H 1.48496 * 109.47280 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47005 * 299.99717 * 3 2 1 6 6 H 1.48497 * 109.47135 * 59.99430 * 3 2 1 7 7 C 1.38815 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00283 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99837 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99608 * 174.45264 * 9 7 2 11 11 C 1.52997 * 109.47431 * 302.14576 * 10 9 7 12 12 N 1.46498 * 109.47161 * 305.35772 * 11 10 9 13 13 C 1.34781 * 120.00253 * 185.07843 * 12 11 10 14 14 O 1.21283 * 119.99707 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99975 * 179.97438 * 13 12 11 16 16 H 1.08996 * 109.47647 * 55.00062 * 15 13 12 17 17 C 1.53087 * 109.48208 * 294.97762 * 15 13 12 18 18 C 1.53174 * 109.16342 * 182.41312 * 17 15 13 19 19 C 1.53168 * 109.03890 * 56.97597 * 18 17 15 20 20 C 1.53092 * 109.16757 * 303.02068 * 19 18 17 21 21 O 1.42899 * 109.47765 * 175.02088 * 15 13 12 22 22 C 1.53005 * 109.46699 * 182.14473 * 10 9 7 23 23 C 1.52993 * 109.47460 * 299.99922 * 22 10 9 24 24 C 1.53000 * 109.47416 * 300.00027 * 23 22 10 25 25 C 1.53005 * 109.46828 * 59.99586 * 24 23 22 26 26 C 1.52993 * 109.47460 * 300.00387 * 25 24 23 27 27 H 0.97005 * 119.99918 * 0.02562 * 1 2 3 28 28 H 0.97006 * 119.99696 * 354.45030 * 9 7 2 29 29 H 1.08998 * 109.47160 * 65.35656 * 11 10 9 30 30 H 1.08999 * 109.47285 * 185.35768 * 11 10 9 31 31 H 0.97007 * 120.00054 * 5.07786 * 12 11 10 32 32 H 1.09003 * 109.52015 * 302.31338 * 17 15 13 33 33 H 1.08999 * 109.52556 * 62.50042 * 17 15 13 34 34 H 1.08998 * 109.54535 * 176.84693 * 18 17 15 35 35 H 1.09003 * 109.53963 * 297.02087 * 18 17 15 36 36 H 1.09006 * 109.52630 * 62.92726 * 19 18 17 37 37 H 1.09001 * 109.52304 * 183.11516 * 19 18 17 38 38 H 1.08998 * 109.48248 * 177.59087 * 20 19 18 39 39 H 1.08995 * 109.48247 * 297.61467 * 20 19 18 40 40 H 1.09007 * 109.46758 * 179.97438 * 22 10 9 41 41 H 1.09004 * 109.47108 * 60.00598 * 22 10 9 42 42 H 1.08997 * 109.47152 * 60.00230 * 23 22 10 43 43 H 1.08998 * 109.46963 * 179.97438 * 23 22 10 44 44 H 1.08993 * 109.47434 * 179.97438 * 24 23 22 45 45 H 1.08997 * 109.47126 * 300.00219 * 24 23 22 46 46 H 1.09007 * 109.46758 * 60.00497 * 25 24 23 47 47 H 1.08994 * 109.47112 * 179.97438 * 25 24 23 48 48 H 1.08995 * 109.47300 * 180.02562 * 26 25 24 49 49 H 1.09007 * 109.47226 * 299.99824 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0528 -3.6539 -0.1215 11 6 2.8674 -3.6512 -1.4166 12 7 1.9830 -3.3665 -2.5493 13 6 2.4630 -3.4143 -3.8078 14 8 3.6272 -3.6926 -4.0026 15 6 1.5529 -3.1220 -4.9729 16 1 1.0884 -2.1457 -4.8352 17 6 0.4665 -4.1974 -5.0546 18 6 -0.4176 -3.9274 -6.2759 19 6 0.4606 -3.8918 -7.5303 20 6 1.5473 -2.8281 -7.3531 21 8 2.3132 -3.1216 -6.1829 22 6 1.0560 -4.8143 -0.1484 23 6 0.2414 -4.8171 1.1466 24 6 1.1831 -4.9814 2.3412 25 6 2.1800 -3.8210 2.3681 26 6 2.9946 -3.8182 1.0730 27 1 -0.4850 0.8401 -0.0004 28 1 0.3588 -2.3900 0.0814 29 1 3.6406 -2.8851 -1.3579 30 1 3.3327 -4.6271 -1.5553 31 1 1.0518 -3.1435 -2.3935 32 1 0.9317 -5.1785 -5.1514 33 1 -0.1423 -4.1696 -4.1508 34 1 -1.1588 -4.7207 -6.3721 35 1 -0.9227 -2.9690 -6.1555 36 1 0.9257 -4.8666 -7.6773 37 1 -0.1524 -3.6453 -8.3973 38 1 2.2013 -2.8278 -8.2251 39 1 1.0826 -1.8479 -7.2470 40 1 1.5972 -5.7561 -0.2397 41 1 0.3850 -4.6973 -0.9995 42 1 -0.2998 -3.8753 1.2375 43 1 -0.4690 -5.6435 1.1272 44 1 0.6029 -4.9829 3.2638 45 1 1.7243 -5.9232 2.2503 46 1 1.6388 -2.8791 2.4590 47 1 2.8506 -3.9377 3.2193 48 1 3.7050 -2.9918 1.0924 49 1 3.5358 -4.7600 0.9822 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115483630.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:04 Heat of formation + Delta-G solvation = -97.230632 kcal Electronic energy + Delta-G solvation = -27755.865145 eV Core-core repulsion = 24102.906461 eV Total energy + Delta-G solvation = -3652.958684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.03880 -38.99146 -37.81557 -34.47227 -33.71981 -33.18267 -31.73146 -30.81024 -30.25875 -28.57250 -26.28597 -24.51346 -23.85561 -23.78823 -22.13620 -20.71524 -20.36699 -19.82943 -18.36827 -17.35929 -16.98915 -16.39584 -15.65098 -15.31539 -14.93100 -14.73844 -14.53993 -14.30438 -14.14004 -13.97715 -13.69167 -13.60910 -13.04777 -12.86858 -12.72258 -12.61462 -11.97000 -11.91510 -11.72360 -11.57478 -11.45948 -11.29522 -11.14827 -11.12129 -10.90563 -10.77997 -10.58688 -10.51044 -10.17450 -10.08476 -9.80205 -9.63081 -9.52613 -9.33549 -9.19915 -8.90127 -8.37378 -7.02923 -5.82864 -3.11425 3.06635 3.26004 3.40064 3.48332 3.49234 4.24189 4.55379 4.69653 4.71469 4.76752 4.89570 5.12189 5.18332 5.22686 5.24626 5.27064 5.40282 5.49477 5.53650 5.60951 5.63215 5.69475 5.71800 5.79297 5.80875 5.88270 5.93699 5.95118 6.02409 6.09489 6.14547 6.15665 6.19331 6.28283 6.42996 6.50605 6.57999 6.75889 6.78119 6.80012 6.96538 7.06832 7.13666 7.20674 7.70965 8.11261 8.35538 8.75436 9.48523 10.01019 10.37635 11.39165 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011371 B = 0.004928 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.801969 B = 5680.477499 C = 6996.331234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.009 4.009 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.228 4.228 8 H 0.070 0.930 9 N -0.710 5.710 10 C 0.191 3.809 11 C 0.120 3.880 12 N -0.695 5.695 13 C 0.516 3.484 14 O -0.539 6.539 15 C 0.074 3.926 16 H 0.084 0.916 17 C -0.144 4.144 18 C -0.121 4.121 19 C -0.157 4.157 20 C 0.058 3.942 21 O -0.355 6.355 22 C -0.113 4.113 23 C -0.115 4.115 24 C -0.113 4.113 25 C -0.109 4.109 26 C -0.117 4.117 27 H 0.253 0.747 28 H 0.385 0.615 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.404 0.596 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.050 0.950 46 H 0.080 0.920 47 H 0.044 0.956 48 H 0.063 0.937 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.785 -10.467 -7.107 12.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.205 4.205 3 Si 0.730 3.270 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.359 4.359 8 H 0.088 0.912 9 N -0.353 5.353 10 C 0.099 3.901 11 C -0.006 4.006 12 N -0.347 5.347 13 C 0.300 3.700 14 O -0.416 6.416 15 C 0.013 3.987 16 H 0.102 0.898 17 C -0.182 4.182 18 C -0.159 4.159 19 C -0.195 4.195 20 C -0.019 4.019 21 O -0.273 6.273 22 C -0.151 4.151 23 C -0.153 4.153 24 C -0.150 4.150 25 C -0.147 4.147 26 C -0.158 4.158 27 H 0.063 0.937 28 H 0.220 0.780 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.240 0.760 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.099 0.901 47 H 0.063 0.937 48 H 0.082 0.918 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.631 -10.556 -7.251 12.910 hybrid contribution -0.575 1.305 0.064 1.428 sum -2.206 -9.251 -7.187 11.921 Atomic orbital electron populations 1.69653 1.04938 1.25435 1.58034 1.24653 0.95384 0.97389 1.03057 0.86238 0.79053 0.84604 0.77064 1.20613 1.22058 1.22032 1.19137 0.91019 0.83759 1.41969 0.91239 1.42479 1.06106 0.99400 1.87273 1.19828 0.91502 0.87509 0.91247 1.21805 0.93240 0.99487 0.86097 1.45648 1.14935 1.69563 1.04581 1.19978 0.88177 0.77967 0.83852 1.90667 1.17552 1.48082 1.85277 1.21909 0.91559 0.99673 0.85574 0.89812 1.22116 0.96957 0.99510 0.99594 1.21585 0.97683 1.02527 0.94078 1.22210 0.98091 1.00805 0.98379 1.22632 0.94031 0.96869 0.88349 1.88054 1.34042 1.91710 1.13456 1.21692 0.98033 0.97860 0.97556 1.21471 0.97546 1.01756 0.94534 1.21477 0.97568 0.98381 0.97624 1.21369 0.97455 0.99531 0.96323 1.21838 0.98199 1.00113 0.95610 0.93690 0.78008 0.91779 0.92841 0.75968 0.90618 0.90051 0.91145 0.91379 0.91003 0.90894 0.88666 0.93045 0.92258 0.92374 0.90897 0.93222 0.93020 0.93139 0.90118 0.93706 0.91830 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.85 13.07 55.49 0.73 -25.12 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 3 Si 0.90 21.81 29.55 -169.99 -5.02 16.78 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 7 C -0.23 -5.64 8.72 -15.05 -0.13 -5.77 16 8 H 0.07 1.77 6.76 -52.49 -0.35 1.41 16 9 N -0.71 -15.02 3.45 -47.23 -0.16 -15.19 16 10 C 0.19 3.33 0.41 -131.82 -0.05 3.28 16 11 C 0.12 2.19 4.28 -4.04 -0.02 2.18 16 12 N -0.70 -12.30 5.04 -60.30 -0.30 -12.61 16 13 C 0.52 9.63 7.18 -10.98 -0.08 9.56 16 14 O -0.54 -12.10 16.50 -14.30 -0.24 -12.34 16 15 C 0.07 1.14 3.05 -27.84 -0.09 1.05 16 16 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 17 C -0.14 -1.73 5.37 -26.60 -0.14 -1.87 16 18 C -0.12 -1.19 6.03 -26.55 -0.16 -1.35 16 19 C -0.16 -1.49 6.14 -26.60 -0.16 -1.66 16 20 C 0.06 0.67 6.84 37.20 0.25 0.92 16 21 O -0.35 -5.74 9.94 -55.09 -0.55 -6.28 16 22 C -0.11 -1.68 4.67 -26.73 -0.12 -1.81 16 23 C -0.12 -1.67 5.75 -26.73 -0.15 -1.82 16 24 C -0.11 -1.59 5.92 -26.73 -0.16 -1.75 16 25 C -0.11 -1.77 5.77 -26.73 -0.15 -1.92 16 26 C -0.12 -1.98 4.59 -26.73 -0.12 -2.10 16 27 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.38 8.73 6.46 -40.82 -0.26 8.47 16 29 H 0.06 1.35 7.46 -51.93 -0.39 0.96 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.40 6.91 7.27 -40.82 -0.30 6.61 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.91 7.99 -51.93 -0.41 0.49 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 41 H 0.06 0.84 7.32 -51.93 -0.38 0.46 16 42 H 0.07 1.22 6.82 -51.93 -0.35 0.86 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 1.56 7.60 -51.92 -0.39 1.16 16 47 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.06 1.18 7.29 -51.93 -0.38 0.80 16 49 H 0.04 0.69 8.14 -51.92 -0.42 0.26 16 LS Contribution 374.50 15.07 5.64 5.64 Total: -1.00 -29.80 374.50 -9.99 -39.80 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -8.70 Total: 12.72 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -1.39 Total: -3.40 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 0.26 Total: -52.92 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.78 Total: -18.62 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.80 -9.99 -39.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115483630.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.433 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds