Wall clock time and date at job start Fri Apr 10 2020 22:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86811 * 119.99618 * 2 1 4 4 H 1.48494 * 109.46864 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47205 * 300.00175 * 3 2 1 6 6 H 1.48506 * 109.46713 * 60.00300 * 3 2 1 7 7 C 1.37871 * 120.00453 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00210 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00047 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46975 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.46880 * 179.97438 * 10 9 7 12 12 C 1.34771 * 120.00187 * 179.97438 * 11 10 9 13 13 O 1.21350 * 120.00112 * 0.02562 * 12 11 10 14 14 C 1.49455 * 120.00215 * 179.97438 * 12 11 10 15 15 O 1.21350 * 119.99673 * 0.02562 * 14 12 11 16 16 N 1.34772 * 119.99794 * 180.02562 * 14 12 11 17 17 C 1.46505 * 119.99884 * 180.02562 * 16 14 12 18 18 C 1.52991 * 109.47326 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.47258 * 179.97438 * 18 17 16 20 20 C 1.53003 * 109.47400 * 179.97438 * 19 18 17 21 21 C 1.52994 * 109.47126 * 180.02562 * 20 19 18 22 22 C 1.54961 * 110.92578 * 71.54077 * 21 20 19 23 23 C 1.54270 * 104.16191 * 156.29427 * 22 21 20 24 24 C 1.53869 * 106.63967 * 336.44607 * 23 22 21 25 25 C 1.54268 * 106.60115 * 359.97438 * 24 23 22 26 26 H 0.96999 * 120.00280 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46942 * 59.99402 * 9 7 2 28 28 H 1.09000 * 109.46664 * 299.99685 * 9 7 2 29 29 H 1.09006 * 109.47141 * 60.00325 * 10 9 7 30 30 H 1.08991 * 109.47441 * 299.99865 * 10 9 7 31 31 H 0.96999 * 119.99857 * 0.02562 * 11 10 9 32 32 H 0.96999 * 120.00378 * 0.02562 * 16 14 12 33 33 H 1.08999 * 109.46811 * 59.99985 * 17 16 14 34 34 H 1.09005 * 109.47115 * 300.00587 * 17 16 14 35 35 H 1.08999 * 109.47591 * 59.99970 * 18 17 16 36 36 H 1.09000 * 109.47025 * 299.99635 * 18 17 16 37 37 H 1.09001 * 109.47169 * 60.00211 * 19 18 17 38 38 H 1.09000 * 109.46864 * 299.99807 * 19 18 17 39 39 H 1.08995 * 109.46922 * 59.99869 * 20 19 18 40 40 H 1.09000 * 109.47141 * 299.99866 * 20 19 18 41 41 H 1.09001 * 110.67554 * 308.23161 * 21 20 19 42 42 H 1.08997 * 110.47708 * 37.64024 * 22 21 20 43 43 H 1.09002 * 110.53308 * 274.97416 * 22 21 20 44 44 H 1.09002 * 110.03399 * 217.13605 * 23 22 21 45 45 H 1.08995 * 110.02943 * 95.75505 * 23 22 21 46 46 H 1.08999 * 110.03405 * 119.26051 * 24 23 22 47 47 H 1.09001 * 110.03705 * 240.64196 * 24 23 22 48 48 H 1.08997 * 110.48788 * 142.28685 * 25 24 23 49 49 H 1.09000 * 110.48806 * 264.79985 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6619 0.0005 11 7 1.5131 -4.9307 0.0012 12 6 2.1870 -6.0979 0.0007 13 8 3.4005 -6.0978 0.0003 14 6 1.4398 -7.3922 0.0019 15 8 0.2263 -7.3923 0.0028 16 7 2.1138 -8.5593 0.0021 17 6 1.3814 -9.8282 0.0027 18 6 2.3756 -10.9910 0.0033 19 6 1.6107 -12.3160 0.0046 20 6 2.6050 -13.4790 0.0046 21 6 1.8401 -14.8039 0.0053 22 6 1.1660 -15.0545 -1.3674 23 6 0.9905 -16.5860 -1.4277 24 6 2.0383 -17.1875 -0.4749 25 6 2.8153 -16.0007 0.1315 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 2.8722 -3.6042 0.8906 30 1 2.8721 -3.6042 -0.8894 31 1 0.5431 -4.9308 0.0011 32 1 3.0838 -8.5593 0.0017 33 1 0.7545 -9.8862 -0.8871 34 1 0.7549 -9.8857 0.8929 35 1 3.0023 -10.9328 0.8933 36 1 3.0023 -10.9337 -0.8867 37 1 0.9838 -12.3746 -0.8852 38 1 0.9844 -12.3731 0.8949 39 1 3.2323 -13.4206 0.8941 40 1 3.2311 -13.4217 -0.8858 41 1 1.1014 -14.8215 0.8066 42 1 1.8107 -14.7123 -2.1769 43 1 0.1971 -14.5574 -1.4139 44 1 1.1618 -16.9418 -2.4437 45 1 -0.0125 -16.8600 -1.1006 46 1 1.5438 -17.7527 0.3151 47 1 2.7177 -17.8358 -1.0282 48 1 3.0496 -16.1931 1.1785 49 1 3.7279 -15.8131 -0.4343 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117391919.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:12 Heat of formation + Delta-G solvation = -124.059759 kcal Electronic energy + Delta-G solvation = -24081.794129 eV Core-core repulsion = 20427.672047 eV Total energy + Delta-G solvation = -3654.122082 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.39031 -38.98158 -38.31410 -36.37299 -35.13392 -34.00299 -32.83921 -30.84313 -29.80500 -29.13026 -27.37838 -25.54131 -24.02425 -22.57879 -21.81125 -21.01449 -20.60405 -20.30760 -20.01878 -18.20941 -16.81188 -16.49816 -16.27273 -16.15844 -15.54067 -15.44923 -15.29542 -14.77334 -14.56430 -14.44160 -13.95069 -13.81942 -13.48617 -13.33336 -12.92457 -12.86758 -12.63540 -12.32739 -12.04068 -11.70840 -11.68381 -11.51605 -11.47117 -11.22643 -11.16498 -11.07512 -10.98817 -10.86150 -10.83878 -10.75363 -10.64914 -10.40429 -9.78892 -9.43344 -9.33429 -9.17756 -8.69105 -8.41900 -6.10119 -4.13768 1.63173 2.55778 3.28054 3.35700 3.40289 3.44735 3.87952 4.07859 4.18547 4.23871 4.40493 4.48026 4.55250 4.70480 4.80054 4.85411 4.95894 5.04574 5.11616 5.15358 5.18675 5.23633 5.26915 5.33143 5.40303 5.41522 5.48246 5.53994 5.61685 5.64970 5.69327 5.76399 5.85103 5.90052 5.96487 6.04328 6.14451 6.18782 6.24272 6.60276 6.69913 7.07206 7.47447 7.58132 7.68211 7.87396 7.94360 8.21736 8.34922 8.92112 9.51296 11.01410 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.058275 B = 0.001464 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.368583 B =19119.152369 C =19415.171796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.010 3.990 10 C 0.118 3.882 11 N -0.686 5.686 12 C 0.497 3.503 13 O -0.535 6.535 14 C 0.507 3.493 15 O -0.521 6.521 16 N -0.707 5.707 17 C 0.117 3.883 18 C -0.133 4.133 19 C -0.116 4.116 20 C -0.111 4.111 21 C -0.094 4.094 22 C -0.121 4.121 23 C -0.127 4.127 24 C -0.126 4.126 25 C -0.122 4.122 26 H 0.262 0.738 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.410 0.590 32 H 0.412 0.588 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.410 -33.471 -0.676 33.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.079 0.921 9 C -0.027 4.027 10 C -0.003 4.003 11 N -0.337 5.337 12 C 0.276 3.724 13 O -0.413 6.413 14 C 0.288 3.712 15 O -0.396 6.396 16 N -0.361 5.361 17 C -0.007 4.007 18 C -0.171 4.171 19 C -0.154 4.154 20 C -0.148 4.148 21 C -0.112 4.112 22 C -0.158 4.158 23 C -0.164 4.164 24 C -0.164 4.164 25 C -0.159 4.159 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.246 0.754 32 H 0.248 0.752 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.082 0.918 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.236 -33.327 -0.679 33.491 hybrid contribution 0.343 0.898 -0.008 0.961 sum 3.578 -32.429 -0.687 32.633 Atomic orbital electron populations 1.69968 1.06101 1.26838 1.50163 1.24998 0.94886 0.99436 0.94928 0.86449 0.80123 0.83305 0.77632 1.19571 1.20923 1.20925 1.21055 0.93263 0.90235 1.51599 0.92107 1.19367 0.94206 0.90895 0.98268 1.21936 0.96275 0.80766 1.01337 1.46235 1.11793 1.05803 1.69849 1.19991 0.87713 0.85292 0.79366 1.90725 1.13248 1.87567 1.49739 1.20459 0.87736 0.85618 0.77423 1.90757 1.13468 1.87699 1.47697 1.45773 1.11456 1.05037 1.73816 1.21478 0.94866 0.81472 1.02846 1.21829 0.98372 0.93700 1.03185 1.21512 0.98250 0.92930 1.02711 1.21582 0.97806 0.93231 1.02227 1.22180 0.97287 0.94055 0.97694 1.22462 1.00679 0.95525 0.97172 1.22140 0.99073 0.95731 0.99503 1.22128 0.97748 0.97790 0.98691 1.22424 0.98272 0.94542 1.00685 0.92831 0.95647 0.95635 0.91862 0.91856 0.75381 0.75155 0.91048 0.91050 0.91012 0.91013 0.91445 0.91566 0.91811 0.91770 0.90626 0.91547 0.91633 0.92033 0.92001 0.92032 0.92051 0.91822 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 9 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 10 C 0.12 2.49 5.61 -4.04 -0.02 2.47 16 11 N -0.69 -12.63 5.55 -60.73 -0.34 -12.97 16 12 C 0.50 8.64 7.89 -11.59 -0.09 8.54 16 13 O -0.53 -10.16 16.48 5.50 0.09 -10.07 16 14 C 0.51 7.67 7.89 -11.58 -0.09 7.58 16 15 O -0.52 -8.95 16.48 5.50 0.09 -8.85 16 16 N -0.71 -8.07 5.55 -60.73 -0.34 -8.40 16 17 C 0.12 1.04 5.67 -4.04 -0.02 1.02 16 18 C -0.13 -0.82 5.33 -26.74 -0.14 -0.97 16 19 C -0.12 -0.63 5.11 -26.73 -0.14 -0.77 16 20 C -0.11 -0.56 4.72 -26.73 -0.13 -0.69 16 21 C -0.09 -0.49 2.86 -88.59 -0.25 -0.74 16 22 C -0.12 -0.64 5.71 -25.03 -0.14 -0.78 16 23 C -0.13 -0.65 6.80 -25.61 -0.17 -0.83 16 24 C -0.13 -0.63 6.80 -25.62 -0.17 -0.80 16 25 C -0.12 -0.62 6.27 -25.07 -0.16 -0.77 16 26 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.41 7.22 7.94 -40.82 -0.32 6.90 16 32 H 0.41 4.20 7.94 -40.82 -0.32 3.87 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.37 7.66 -51.93 -0.40 -0.03 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.06 0.33 8.00 -51.93 -0.42 -0.08 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.36 7.95 -51.93 -0.41 -0.05 16 43 H 0.06 0.35 8.10 -51.93 -0.42 -0.07 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 48 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 49 H 0.07 0.34 8.05 -51.93 -0.42 -0.08 16 LS Contribution 400.49 15.07 6.04 6.04 Total: -1.00 -31.12 400.49 -9.85 -40.97 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -9.02 Total: 2.21 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -2.09 Total: 0.23 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.06 Total: -46.77 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.18 Total: -18.92 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.12 -9.85 -40.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117391919.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.090 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds