Wall clock time and date at job start Fri Apr 10 2020 22:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86811 * 119.99618 * 2 1 4 4 H 1.48494 * 109.46864 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47205 * 300.00175 * 3 2 1 6 6 H 1.48506 * 109.46713 * 60.00300 * 3 2 1 7 7 C 1.37871 * 120.00453 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00210 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00047 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46975 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.46880 * 179.97438 * 10 9 7 12 12 C 1.34771 * 120.00187 * 179.97438 * 11 10 9 13 13 O 1.21350 * 120.00112 * 0.02562 * 12 11 10 14 14 C 1.49455 * 120.00215 * 179.97438 * 12 11 10 15 15 O 1.21350 * 119.99673 * 0.02562 * 14 12 11 16 16 N 1.34772 * 119.99794 * 180.02562 * 14 12 11 17 17 C 1.46505 * 119.99884 * 180.02562 * 16 14 12 18 18 C 1.52991 * 109.47326 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.47258 * 179.97438 * 18 17 16 20 20 C 1.53003 * 109.47400 * 179.97438 * 19 18 17 21 21 C 1.52994 * 109.47126 * 180.02562 * 20 19 18 22 22 C 1.54961 * 110.92578 * 71.54077 * 21 20 19 23 23 C 1.54270 * 104.16191 * 156.29427 * 22 21 20 24 24 C 1.53869 * 106.63967 * 336.44607 * 23 22 21 25 25 C 1.54268 * 106.60115 * 359.97438 * 24 23 22 26 26 H 0.96999 * 120.00280 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46942 * 59.99402 * 9 7 2 28 28 H 1.09000 * 109.46664 * 299.99685 * 9 7 2 29 29 H 1.09006 * 109.47141 * 60.00325 * 10 9 7 30 30 H 1.08991 * 109.47441 * 299.99865 * 10 9 7 31 31 H 0.96999 * 119.99857 * 0.02562 * 11 10 9 32 32 H 0.96999 * 120.00378 * 0.02562 * 16 14 12 33 33 H 1.08999 * 109.46811 * 59.99985 * 17 16 14 34 34 H 1.09005 * 109.47115 * 300.00587 * 17 16 14 35 35 H 1.08999 * 109.47591 * 59.99970 * 18 17 16 36 36 H 1.09000 * 109.47025 * 299.99635 * 18 17 16 37 37 H 1.09001 * 109.47169 * 60.00211 * 19 18 17 38 38 H 1.09000 * 109.46864 * 299.99807 * 19 18 17 39 39 H 1.08995 * 109.46922 * 59.99869 * 20 19 18 40 40 H 1.09000 * 109.47141 * 299.99866 * 20 19 18 41 41 H 1.09001 * 110.67554 * 308.23161 * 21 20 19 42 42 H 1.08997 * 110.47708 * 37.64024 * 22 21 20 43 43 H 1.09002 * 110.53308 * 274.97416 * 22 21 20 44 44 H 1.09002 * 110.03399 * 217.13605 * 23 22 21 45 45 H 1.08995 * 110.02943 * 95.75505 * 23 22 21 46 46 H 1.08999 * 110.03405 * 119.26051 * 24 23 22 47 47 H 1.09001 * 110.03705 * 240.64196 * 24 23 22 48 48 H 1.08997 * 110.48788 * 142.28685 * 25 24 23 49 49 H 1.09000 * 110.48806 * 264.79985 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6619 0.0005 11 7 1.5131 -4.9307 0.0012 12 6 2.1870 -6.0979 0.0007 13 8 3.4005 -6.0978 0.0003 14 6 1.4398 -7.3922 0.0019 15 8 0.2263 -7.3923 0.0028 16 7 2.1138 -8.5593 0.0021 17 6 1.3814 -9.8282 0.0027 18 6 2.3756 -10.9910 0.0033 19 6 1.6107 -12.3160 0.0046 20 6 2.6050 -13.4790 0.0046 21 6 1.8401 -14.8039 0.0053 22 6 1.1660 -15.0545 -1.3674 23 6 0.9905 -16.5860 -1.4277 24 6 2.0383 -17.1875 -0.4749 25 6 2.8153 -16.0007 0.1315 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 2.8722 -3.6042 0.8906 30 1 2.8721 -3.6042 -0.8894 31 1 0.5431 -4.9308 0.0011 32 1 3.0838 -8.5593 0.0017 33 1 0.7545 -9.8862 -0.8871 34 1 0.7549 -9.8857 0.8929 35 1 3.0023 -10.9328 0.8933 36 1 3.0023 -10.9337 -0.8867 37 1 0.9838 -12.3746 -0.8852 38 1 0.9844 -12.3731 0.8949 39 1 3.2323 -13.4206 0.8941 40 1 3.2311 -13.4217 -0.8858 41 1 1.1014 -14.8215 0.8066 42 1 1.8107 -14.7123 -2.1769 43 1 0.1971 -14.5574 -1.4139 44 1 1.1618 -16.9418 -2.4437 45 1 -0.0125 -16.8600 -1.1006 46 1 1.5438 -17.7527 0.3151 47 1 2.7177 -17.8358 -1.0282 48 1 3.0496 -16.1931 1.1785 49 1 3.7279 -15.8131 -0.4343 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117391919.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:11 Heat of formation + Delta-G solvation = -143.072201 kcal Electronic energy + Delta-G solvation = -24082.618570 eV Core-core repulsion = 20427.672047 eV Total energy + Delta-G solvation = -3654.946524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.68968 -39.71531 -39.33151 -37.27415 -36.65984 -35.00580 -34.61100 -31.71121 -31.43308 -29.52936 -28.19686 -27.09749 -25.23951 -23.58568 -22.75360 -22.37598 -21.37875 -20.92101 -20.71710 -19.50575 -18.58004 -17.82283 -17.31219 -16.84625 -16.58530 -16.49001 -16.42676 -16.07660 -15.77832 -15.67473 -14.91997 -14.84959 -14.39370 -14.31639 -14.21106 -13.86357 -13.41249 -13.25172 -13.24672 -12.96287 -12.84396 -12.58687 -12.51007 -12.29731 -12.16281 -12.11593 -11.89632 -11.68968 -11.63019 -11.43238 -11.39520 -11.30478 -11.24042 -11.16438 -10.68005 -10.62301 -10.34077 -10.19657 -8.23519 -6.34786 0.31677 1.32867 1.42639 1.44124 1.56923 2.11688 2.40123 2.69676 3.11671 3.43547 3.62881 3.77985 3.81814 3.96406 4.04312 4.24337 4.37636 4.38594 4.44955 4.51390 4.59512 4.62560 4.68081 4.74689 4.80854 4.81391 4.86873 4.91969 4.95953 5.02463 5.07416 5.09118 5.14847 5.17849 5.22859 5.28891 5.35215 5.41532 5.42537 5.48023 5.54642 5.56262 5.64019 5.75545 5.93610 6.12837 6.36273 6.70985 6.79927 6.92682 7.35040 8.88747 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.058275 B = 0.001464 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.368583 B =19119.152369 C =19415.171796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.018 3.982 10 C 0.137 3.863 11 N -0.689 5.689 12 C 0.500 3.500 13 O -0.549 6.549 14 C 0.512 3.488 15 O -0.544 6.544 16 N -0.687 5.687 17 C 0.114 3.886 18 C -0.123 4.123 19 C -0.112 4.112 20 C -0.107 4.107 21 C -0.093 4.093 22 C -0.122 4.122 23 C -0.129 4.129 24 C -0.127 4.127 25 C -0.122 4.122 26 H 0.265 0.735 27 H 0.008 0.992 28 H 0.008 0.992 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.414 0.586 32 H 0.420 0.580 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.065 0.935 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.598 -34.323 -0.642 34.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.583 4.583 8 H 0.083 0.917 9 C -0.020 4.020 10 C 0.015 3.985 11 N -0.340 5.340 12 C 0.280 3.720 13 O -0.428 6.428 14 C 0.292 3.708 15 O -0.422 6.422 16 N -0.340 5.340 17 C -0.009 4.009 18 C -0.161 4.161 19 C -0.151 4.151 20 C -0.144 4.144 21 C -0.111 4.111 22 C -0.159 4.159 23 C -0.167 4.167 24 C -0.165 4.165 25 C -0.160 4.160 26 H 0.074 0.926 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.251 0.749 32 H 0.258 0.742 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.084 0.916 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.451 -34.231 -0.644 34.526 hybrid contribution -0.030 1.064 -0.022 1.065 sum 4.421 -33.167 -0.665 33.467 Atomic orbital electron populations 1.70082 1.07718 1.27963 1.51042 1.25908 0.95747 1.03260 0.94386 0.85355 0.79090 0.78585 0.77756 1.18566 1.20388 1.20397 1.21484 0.93774 0.91540 1.51472 0.91679 1.19189 0.94369 0.91968 0.96474 1.21486 0.95095 0.80764 1.01182 1.46079 1.11919 1.05506 1.70492 1.20364 0.87569 0.85766 0.78271 1.90714 1.13967 1.87922 1.50213 1.19979 0.87216 0.85595 0.78010 1.90757 1.14168 1.87818 1.49455 1.45795 1.11971 1.04743 1.71531 1.21696 0.95493 0.80929 1.02733 1.21777 0.97779 0.92671 1.03889 1.21478 0.98256 0.92569 1.02753 1.21535 0.97629 0.92869 1.02380 1.22163 0.97257 0.94221 0.97477 1.22466 1.00610 0.95612 0.97224 1.22162 0.99159 0.95694 0.99651 1.22146 0.97767 0.97855 0.98732 1.22430 0.98219 0.94476 1.00835 0.92581 0.97402 0.97391 0.91980 0.91974 0.74946 0.74203 0.91172 0.91162 0.90292 0.90332 0.91488 0.91530 0.91569 0.91677 0.90901 0.91669 0.91748 0.91922 0.92014 0.91918 0.91817 0.91607 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.91 13.29 21.44 0.28 -54.63 16 2 C 0.01 0.32 5.46 84.65 0.46 0.78 16 3 Si 0.97 43.36 29.54 68.60 2.03 45.39 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.54 -30.09 9.11 25.60 0.23 -29.86 16 8 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.02 0.89 5.09 29.85 0.15 1.04 16 10 C 0.14 5.79 5.61 86.38 0.48 6.27 16 11 N -0.69 -25.33 5.55 -464.41 -2.58 -27.91 16 12 C 0.50 17.00 7.89 87.27 0.69 17.69 16 13 O -0.55 -20.28 16.48 -3.25 -0.05 -20.33 16 14 C 0.51 14.98 7.89 87.27 0.69 15.67 16 15 O -0.54 -18.34 16.48 -3.25 -0.05 -18.40 16 16 N -0.69 -14.53 5.55 -464.41 -2.58 -17.11 16 17 C 0.11 1.84 5.67 86.38 0.49 2.33 16 18 C -0.12 -1.25 5.33 30.59 0.16 -1.09 16 19 C -0.11 -1.01 5.11 30.60 0.16 -0.86 16 20 C -0.11 -0.89 4.72 30.59 0.14 -0.75 16 21 C -0.09 -0.84 2.86 -9.48 -0.03 -0.87 16 22 C -0.12 -1.16 5.71 31.70 0.18 -0.98 16 23 C -0.13 -1.21 6.80 31.32 0.21 -1.00 16 24 C -0.13 -1.14 6.80 31.32 0.21 -0.93 16 25 C -0.12 -1.09 6.27 31.67 0.20 -0.89 16 26 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 27 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 2.63 8.14 -2.38 -0.02 2.61 16 30 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.41 14.73 7.94 -92.71 -0.74 13.99 16 32 H 0.42 7.69 7.94 -92.71 -0.74 6.95 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.06 0.55 8.00 -2.39 -0.02 0.53 16 41 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.06 0.63 7.95 -2.39 -0.02 0.62 16 43 H 0.06 0.62 8.10 -2.39 -0.02 0.60 16 44 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.07 0.59 8.05 -2.39 -0.02 0.57 16 Total: -1.00 -65.30 400.49 0.94 -64.36 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -0.55 Total: 22.06 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 4.44 Total: 6.57 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -4.87 Total: -99.64 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -0.11 Total: -38.73 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -65.30 0.94 -64.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117391919.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.714 kcal (2) G-P(sol) polarization free energy of solvation -65.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds