Wall clock time and date at job start Fri Apr 10 2020 22:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 6 6 N 1.28785 * 125.45617 * 239.69359 * 5 2 1 7 7 N 1.28996 * 108.72932 * 179.82762 * 6 5 2 8 8 C 1.33313 * 107.35172 * 0.43018 * 7 6 5 9 9 C 1.50701 * 126.54466 * 179.73579 * 8 7 6 10 10 N 1.46496 * 109.47348 * 269.99770 * 9 8 7 11 11 C 1.34775 * 120.00222 * 180.02562 * 10 9 8 12 12 O 1.21280 * 119.99922 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99942 * 180.02562 * 11 10 9 14 14 H 1.08996 * 109.47474 * 320.00096 * 13 11 10 15 15 N 1.46901 * 109.46864 * 199.99691 * 13 11 10 16 16 C 1.53002 * 109.46951 * 80.00409 * 13 11 10 17 17 C 1.53008 * 109.47016 * 184.99863 * 16 13 11 18 18 C 1.50699 * 109.46999 * 179.97438 * 17 16 13 19 19 H 1.07997 * 119.99843 * 0.02562 * 18 17 16 20 20 C 1.37874 * 119.99993 * 179.97438 * 18 17 16 21 21 N 1.31522 * 120.00006 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00113 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47051 * 60.00041 * 22 20 18 24 24 H 1.48498 * 109.46765 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47040 * 299.99890 * 22 20 18 26 26 N 1.28891 * 125.44881 * 60.00482 * 5 2 1 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 34 34 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 36 36 H 1.08998 * 109.47404 * 30.00256 * 9 8 7 37 37 H 1.09007 * 109.46863 * 150.00255 * 9 8 7 38 38 H 0.96999 * 119.99961 * 0.02562 * 10 9 8 39 39 H 1.00902 * 110.99630 * 176.04204 * 15 13 11 40 40 H 1.00890 * 111.00392 * 300.00362 * 15 13 11 41 41 H 1.08999 * 109.46828 * 304.99727 * 16 13 11 42 42 H 1.08996 * 109.47367 * 64.99484 * 16 13 11 43 43 H 1.08996 * 109.46663 * 300.00132 * 17 16 13 44 44 H 1.09002 * 109.46529 * 59.99862 * 17 16 13 45 45 H 0.96994 * 120.00249 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.0183 -0.6906 -1.1961 6 7 2.7664 -1.7389 -1.2004 7 7 2.9986 -2.0771 -2.4234 8 6 2.3751 -1.1952 -3.2050 9 6 2.3652 -1.1812 -4.7119 10 7 3.4897 -0.3793 -5.2002 11 6 3.6818 -0.2243 -6.5252 12 8 2.9234 -0.7485 -7.3132 13 6 4.8390 0.6002 -7.0274 14 1 4.9564 1.4827 -6.3986 15 7 4.5789 1.0166 -8.4120 16 6 6.1198 -0.2353 -6.9782 17 6 7.3137 0.6381 -7.3692 18 6 8.5754 -0.1846 -7.3202 19 1 8.5301 -1.2263 -7.0387 20 6 9.7873 0.3922 -7.6356 21 7 9.8423 1.6607 -7.9789 22 14 11.3510 -0.6278 -7.5755 23 1 11.2372 -1.7647 -8.5239 24 1 12.5097 0.2200 -7.9549 25 1 11.5493 -1.1491 -6.1992 26 7 1.7726 -0.3430 -2.4127 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 -1.7489 1.2492 34 1 3.1300 -0.7217 1.2490 35 1 1.6767 -0.2075 2.1393 36 1 2.4570 -2.2011 -5.0854 37 1 1.4295 -0.7478 -5.0650 38 1 4.0961 0.0402 -4.5699 39 1 5.3101 1.6242 -8.7502 40 1 4.4663 0.2158 -9.0153 41 1 6.2651 -0.6183 -5.9682 42 1 6.0364 -1.0696 -7.6746 43 1 7.1683 1.0211 -8.3793 44 1 7.3971 1.4724 -6.6727 45 1 10.6949 2.0666 -8.2004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118322609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:16 Heat of formation + Delta-G solvation = 73.350188 kcal Electronic energy + Delta-G solvation = -25352.742138 eV Core-core repulsion = 21635.932801 eV Total energy + Delta-G solvation = -3716.809337 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.186 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.63720 -39.63168 -38.11990 -35.70182 -35.00479 -33.67584 -32.83495 -32.42323 -29.87016 -28.59648 -28.14533 -27.81738 -26.02704 -24.86172 -23.76052 -22.25499 -20.98495 -20.74485 -19.85307 -17.66905 -17.55660 -17.23659 -16.21061 -16.18711 -15.12295 -15.05970 -14.75118 -14.71964 -14.44885 -14.28517 -13.97333 -13.70359 -13.55152 -13.21063 -13.10502 -13.01661 -12.91076 -12.60386 -12.43923 -12.20901 -12.12059 -12.08074 -11.69143 -11.63207 -11.14957 -11.13072 -11.06632 -10.89817 -10.70201 -10.56255 -9.96384 -9.89789 -9.28466 -9.20670 -9.09073 -8.41777 -8.17795 -6.06606 -4.09561 0.97414 1.51315 1.78205 2.90632 3.26446 3.30743 3.35051 3.38160 3.53514 3.79789 3.93817 4.04243 4.29044 4.41542 4.80676 4.83673 4.87873 4.94468 5.00294 5.05318 5.07373 5.19656 5.22719 5.29589 5.35657 5.36930 5.48712 5.51001 5.55049 5.60173 5.67250 5.77864 5.95177 6.31163 6.35285 6.54741 6.89873 7.40512 7.53192 7.61284 7.67215 7.90453 7.92626 8.13580 8.33138 8.40531 8.96290 9.55264 11.04315 Molecular weight = 310.19amu Principal moments of inertia in cm(-1) A = 0.014831 B = 0.002681 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.453182 B =10440.477078 C =11447.005919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.178 3.822 3 C -0.160 4.160 4 C -0.153 4.153 5 N -0.130 5.130 6 N -0.060 5.060 7 N -0.269 5.269 8 C 0.149 3.851 9 C 0.224 3.776 10 N -0.730 5.730 11 C 0.531 3.469 12 O -0.534 6.534 13 C 0.077 3.923 14 H 0.097 0.903 15 N -0.830 5.830 16 C -0.138 4.138 17 C 0.025 3.975 18 C -0.524 4.524 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.277 1.277 26 N -0.289 5.289 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.403 0.597 39 H 0.355 0.645 40 H 0.346 0.654 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.709 -0.627 19.061 27.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.097 3.903 3 C -0.219 4.219 4 C -0.212 4.212 5 N -0.044 5.044 6 N -0.053 5.053 7 N -0.140 5.140 8 C -0.134 4.134 9 C 0.098 3.902 10 N -0.385 5.385 11 C 0.318 3.682 12 O -0.409 6.409 13 C -0.038 4.038 14 H 0.115 0.885 15 N -0.363 5.363 16 C -0.178 4.178 17 C -0.012 4.012 18 C -0.562 4.562 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 N -0.140 5.140 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.238 0.762 39 H 0.170 0.830 40 H 0.159 0.841 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.677 -0.721 19.343 28.323 hybrid contribution 2.063 -0.663 -0.205 2.176 sum -18.614 -1.384 19.138 26.734 Atomic orbital electron populations 1.22238 0.90786 1.03929 1.04740 1.21438 0.96175 0.93164 0.79527 1.22252 1.02660 0.92190 1.04753 1.22102 1.03341 1.01476 0.94240 1.50590 1.29981 1.17679 1.06114 1.78985 1.08381 1.01531 1.16362 1.75937 1.19941 1.23132 0.95037 1.25546 0.97589 0.91026 0.99223 1.19273 0.91931 0.98560 0.80479 1.45906 1.30647 1.54094 1.07865 1.20893 0.85890 0.80421 0.80952 1.90647 1.46725 1.48504 1.55073 1.21452 0.91601 0.97852 0.92933 0.88543 1.58738 1.52183 1.23598 1.01735 1.22396 0.94356 0.99275 1.01780 1.19098 0.90794 0.94628 0.96714 1.21155 0.91878 0.96790 1.46373 0.92713 1.25010 0.99189 0.94971 0.95139 1.69940 1.25894 1.11281 1.46195 0.86639 0.82579 0.80133 0.78578 1.20182 1.21240 1.20211 1.74631 1.23443 1.25140 0.90743 0.90338 0.89090 0.91407 0.89095 0.91185 0.90283 0.90606 0.90447 0.89190 0.88258 0.88608 0.76245 0.82979 0.84066 0.92466 0.92501 0.96359 0.96387 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 8.66 37.16 0.32 -0.40 16 2 C 0.18 1.10 1.30 -131.82 -0.17 0.92 16 3 C -0.16 -0.82 8.66 37.15 0.32 -0.50 16 4 C -0.15 -0.72 7.91 37.16 0.29 -0.42 16 5 N -0.13 -1.33 3.73 0.48 0.00 -1.32 16 6 N -0.06 -0.75 12.24 60.35 0.74 -0.01 16 7 N -0.27 -3.74 12.50 32.44 0.41 -3.34 16 8 C 0.15 1.87 7.74 -156.63 -1.21 0.66 16 9 C 0.22 2.77 6.30 -5.19 -0.03 2.74 16 10 N -0.73 -9.98 5.55 -61.47 -0.34 -10.32 16 11 C 0.53 8.82 7.08 -10.98 -0.08 8.74 16 12 O -0.53 -10.25 16.25 5.56 0.09 -10.16 16 13 C 0.08 1.32 3.21 -68.86 -0.22 1.10 16 14 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 15 N -0.83 -14.32 8.94 -5.65 -0.05 -14.37 16 16 C -0.14 -2.75 4.78 -26.73 -0.13 -2.88 16 17 C 0.02 0.61 4.74 -27.88 -0.13 0.47 16 18 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 19 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 22 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 26 N -0.29 -3.33 11.83 32.46 0.38 -2.94 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 36 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.10 1.12 8.14 -51.92 -0.42 0.70 16 38 H 0.40 5.11 8.46 -40.82 -0.35 4.76 16 39 H 0.35 6.13 7.55 -39.29 -0.30 5.84 16 40 H 0.35 6.03 8.58 -39.30 -0.34 5.69 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 379.75 15.07 5.72 5.72 Total: -1.00 -33.53 379.75 -6.00 -39.53 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -7.22 Total: 9.08 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -1.45 Total: -2.87 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: 1.88 Total: -57.83 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.53 -6.00 -39.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118322609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.884 kcal (2) G-P(sol) polarization free energy of solvation -33.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds