Wall clock time and date at job start Fri Apr 10 2020 22:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 6 6 N 1.28785 * 125.45617 * 239.69359 * 5 2 1 7 7 N 1.28996 * 108.72932 * 179.82762 * 6 5 2 8 8 C 1.33313 * 107.35172 * 0.43018 * 7 6 5 9 9 C 1.50701 * 126.54466 * 179.73579 * 8 7 6 10 10 N 1.46496 * 109.47348 * 269.99770 * 9 8 7 11 11 C 1.34775 * 120.00222 * 180.02562 * 10 9 8 12 12 O 1.21280 * 119.99922 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99942 * 180.02562 * 11 10 9 14 14 H 1.08996 * 109.47474 * 320.00096 * 13 11 10 15 15 N 1.46901 * 109.46864 * 199.99691 * 13 11 10 16 16 C 1.53002 * 109.46951 * 80.00409 * 13 11 10 17 17 C 1.53008 * 109.47016 * 184.99863 * 16 13 11 18 18 C 1.50699 * 109.46999 * 179.97438 * 17 16 13 19 19 H 1.07997 * 119.99843 * 0.02562 * 18 17 16 20 20 C 1.37874 * 119.99993 * 179.97438 * 18 17 16 21 21 N 1.31522 * 120.00006 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00113 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47051 * 60.00041 * 22 20 18 24 24 H 1.48498 * 109.46765 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47040 * 299.99890 * 22 20 18 26 26 N 1.28891 * 125.44881 * 60.00482 * 5 2 1 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 34 34 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 36 36 H 1.08998 * 109.47404 * 30.00256 * 9 8 7 37 37 H 1.09007 * 109.46863 * 150.00255 * 9 8 7 38 38 H 0.96999 * 119.99961 * 0.02562 * 10 9 8 39 39 H 1.00902 * 110.99630 * 176.04204 * 15 13 11 40 40 H 1.00890 * 111.00392 * 300.00362 * 15 13 11 41 41 H 1.08999 * 109.46828 * 304.99727 * 16 13 11 42 42 H 1.08996 * 109.47367 * 64.99484 * 16 13 11 43 43 H 1.08996 * 109.46663 * 300.00132 * 17 16 13 44 44 H 1.09002 * 109.46529 * 59.99862 * 17 16 13 45 45 H 0.96994 * 120.00249 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.0183 -0.6906 -1.1961 6 7 2.7664 -1.7389 -1.2004 7 7 2.9986 -2.0771 -2.4234 8 6 2.3751 -1.1952 -3.2050 9 6 2.3652 -1.1812 -4.7119 10 7 3.4897 -0.3793 -5.2002 11 6 3.6818 -0.2243 -6.5252 12 8 2.9234 -0.7485 -7.3132 13 6 4.8390 0.6002 -7.0274 14 1 4.9564 1.4827 -6.3986 15 7 4.5789 1.0166 -8.4120 16 6 6.1198 -0.2353 -6.9782 17 6 7.3137 0.6381 -7.3692 18 6 8.5754 -0.1846 -7.3202 19 1 8.5301 -1.2263 -7.0387 20 6 9.7873 0.3922 -7.6356 21 7 9.8423 1.6607 -7.9789 22 14 11.3510 -0.6278 -7.5755 23 1 11.2372 -1.7647 -8.5239 24 1 12.5097 0.2200 -7.9549 25 1 11.5493 -1.1491 -6.1992 26 7 1.7726 -0.3430 -2.4127 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 -1.7489 1.2492 34 1 3.1300 -0.7217 1.2490 35 1 1.6767 -0.2075 2.1393 36 1 2.4570 -2.2011 -5.0854 37 1 1.4295 -0.7478 -5.0650 38 1 4.0961 0.0402 -4.5699 39 1 5.3101 1.6242 -8.7502 40 1 4.4663 0.2158 -9.0153 41 1 6.2651 -0.6183 -5.9682 42 1 6.0364 -1.0696 -7.6746 43 1 7.1683 1.0211 -8.3793 44 1 7.3971 1.4724 -6.6727 45 1 10.6949 2.0666 -8.2004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118322609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:15 Heat of formation + Delta-G solvation = 47.671938 kcal Electronic energy + Delta-G solvation = -25353.855631 eV Core-core repulsion = 21635.932801 eV Total energy + Delta-G solvation = -3717.922830 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.186 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -45.53394 -40.97037 -38.70448 -37.20067 -36.25163 -34.83864 -34.55784 -33.36102 -31.68112 -29.58789 -28.51826 -28.45206 -27.59528 -25.72941 -25.41220 -23.29780 -22.39754 -21.67657 -21.24592 -19.03981 -18.44286 -18.22357 -17.93844 -17.30784 -16.59967 -16.30672 -16.16543 -15.60310 -15.36253 -15.25209 -15.17672 -14.86868 -14.65239 -14.48866 -14.27520 -13.97733 -13.64747 -13.46225 -13.42976 -13.23400 -12.98290 -12.92744 -12.84386 -12.67798 -12.59623 -12.54497 -12.20515 -12.02321 -11.99797 -11.80593 -11.74676 -11.39659 -11.31674 -10.76103 -10.55842 -10.28189 -9.64400 -8.21732 -6.31917 0.09094 0.76209 0.85901 1.39425 1.40982 1.48874 1.55771 2.13384 2.39818 2.64150 3.04867 3.11784 3.51224 3.54203 3.64864 3.71361 3.76274 4.12214 4.16920 4.24598 4.36332 4.43562 4.49977 4.53023 4.54931 4.61240 4.66461 4.68866 4.72298 4.73365 4.84121 5.02967 5.08542 5.12005 5.18288 5.21627 5.27545 5.46576 5.65768 5.80594 6.05599 6.21432 6.37027 6.49916 6.83302 7.10693 7.21377 7.37027 8.88874 Molecular weight = 310.19amu Principal moments of inertia in cm(-1) A = 0.014831 B = 0.002681 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.453182 B =10440.477078 C =11447.005919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.162 3.838 3 C -0.157 4.157 4 C -0.151 4.151 5 N -0.115 5.115 6 N -0.072 5.072 7 N -0.299 5.299 8 C 0.144 3.856 9 C 0.228 3.772 10 N -0.717 5.717 11 C 0.536 3.464 12 O -0.560 6.560 13 C 0.083 3.917 14 H 0.109 0.891 15 N -0.828 5.828 16 C -0.122 4.122 17 C 0.031 3.969 18 C -0.546 4.546 19 H 0.054 0.946 20 C 0.006 3.994 21 N -0.926 5.926 22 Si 0.958 3.042 23 H -0.270 1.270 24 H -0.282 1.282 25 H -0.269 1.269 26 N -0.289 5.289 27 H 0.067 0.933 28 H 0.125 0.875 29 H 0.060 0.940 30 H 0.125 0.875 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.124 0.876 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.409 0.591 39 H 0.354 0.646 40 H 0.345 0.655 41 H 0.062 0.938 42 H 0.048 0.952 43 H 0.005 0.995 44 H 0.001 0.999 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.398 -0.564 20.865 29.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.083 3.917 3 C -0.215 4.215 4 C -0.209 4.209 5 N -0.031 5.031 6 N -0.064 5.064 7 N -0.170 5.170 8 C -0.139 4.139 9 C 0.101 3.899 10 N -0.371 5.371 11 C 0.323 3.677 12 O -0.438 6.438 13 C -0.032 4.032 14 H 0.127 0.873 15 N -0.360 5.360 16 C -0.162 4.162 17 C -0.007 4.007 18 C -0.584 4.584 19 H 0.072 0.928 20 C -0.193 4.193 21 N -0.566 5.566 22 Si 0.783 3.217 23 H -0.195 1.195 24 H -0.207 1.207 25 H -0.194 1.194 26 N -0.141 5.141 27 H 0.086 0.914 28 H 0.143 0.857 29 H 0.079 0.921 30 H 0.143 0.857 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.143 0.857 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.245 0.755 39 H 0.169 0.831 40 H 0.159 0.841 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.023 0.977 44 H 0.019 0.981 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.370 -0.669 21.185 30.099 hybrid contribution 2.212 -0.618 -0.657 2.389 sum -19.158 -1.287 20.529 28.109 Atomic orbital electron populations 1.22270 0.89205 1.03856 1.05909 1.22065 0.97416 0.93623 0.78612 1.22285 1.01855 0.91480 1.05899 1.22155 1.02563 1.01414 0.94738 1.51133 1.28460 1.16826 1.06697 1.78921 1.09139 1.02449 1.15871 1.75897 1.21110 1.24229 0.95729 1.25480 0.97992 0.91237 0.99211 1.19299 0.91614 0.98346 0.80590 1.45774 1.30866 1.53448 1.07018 1.20631 0.85419 0.80047 0.81597 1.90641 1.47646 1.49575 1.55936 1.21370 0.90633 0.97922 0.93279 0.87315 1.58754 1.51917 1.23486 1.01801 1.22147 0.94049 0.98428 1.01572 1.18964 0.91762 0.94396 0.95543 1.21603 0.93437 0.97158 1.46238 0.92808 1.25854 1.02567 0.96088 0.94756 1.70050 1.26781 1.12783 1.47013 0.85610 0.78579 0.78639 0.78897 1.19541 1.20694 1.19412 1.74609 1.23324 1.24931 0.91264 0.91370 0.85699 0.92076 0.85691 0.92438 0.91391 0.91342 0.91691 0.85740 0.88264 0.87640 0.75523 0.83132 0.84135 0.91970 0.93330 0.97650 0.98071 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.66 71.98 0.62 -0.43 16 2 C 0.16 1.71 1.30 3.60 0.00 1.71 16 3 C -0.16 -1.30 8.66 71.98 0.62 -0.67 16 4 C -0.15 -1.11 7.91 71.98 0.57 -0.54 16 5 N -0.12 -2.26 3.73 -152.40 -0.57 -2.83 16 6 N -0.07 -1.76 12.24 37.02 0.45 -1.31 16 7 N -0.30 -8.30 12.50 -51.27 -0.64 -8.94 16 8 C 0.14 3.54 7.74 138.55 1.07 4.61 16 9 C 0.23 5.48 6.30 85.63 0.54 6.02 16 10 N -0.72 -19.00 5.55 -466.79 -2.59 -21.59 16 11 C 0.54 17.38 7.08 87.66 0.62 18.00 16 12 O -0.56 -21.14 16.25 -3.03 -0.05 -21.19 16 13 C 0.08 2.81 3.21 44.17 0.14 2.95 16 14 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 15 N -0.83 -28.34 8.94 -171.80 -1.54 -29.88 16 16 C -0.12 -4.84 4.78 30.60 0.15 -4.69 16 17 C 0.03 1.51 4.74 29.85 0.14 1.65 16 18 C -0.55 -30.46 9.11 25.60 0.23 -30.23 16 19 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 20 C 0.01 0.33 5.46 84.65 0.46 0.79 16 21 N -0.93 -54.76 13.29 21.45 0.28 -54.48 16 22 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 N -0.29 -6.47 11.83 -51.20 -0.61 -7.07 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 36 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 38 H 0.41 9.99 8.46 -92.71 -0.78 9.21 16 39 H 0.35 12.26 7.55 -89.69 -0.68 11.59 16 40 H 0.35 11.99 8.58 -89.70 -0.77 11.22 16 41 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.01 0.27 6.87 -2.39 -0.02 0.25 16 44 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 45 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -71.79 379.75 0.74 -71.05 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: -1.21 Total: 31.03 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 5.18 Total: -0.82 kcal Atomic # 7 Polarization: -120.90 SS G_CDS: -5.20 Total: -126.10 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.05 Total: -21.19 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -71.79 0.74 -71.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118322609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.720 kcal (2) G-P(sol) polarization free energy of solvation -71.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds