Wall clock time and date at job start Fri Apr 10 2020 22:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36733 * 127.13882 * 2 1 4 4 C 1.50704 * 126.34885 * 0.03869 * 3 2 1 5 5 C 1.53004 * 109.46649 * 270.25224 * 4 3 2 6 6 C 1.53001 * 109.46611 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.46904 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99895 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99948 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99926 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99850 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47343 * 59.99987 * 11 9 7 13 13 H 1.48499 * 109.47263 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.47014 * 299.99800 * 11 9 7 15 15 N 1.30299 * 107.30633 * 180.22562 * 3 2 1 16 16 N 1.28527 * 110.05344 * 359.77553 * 15 3 2 17 17 C 1.31213 * 109.85810 * 359.97438 * 16 15 3 18 18 N 1.38585 * 126.47093 * 179.97438 * 17 16 15 19 19 C 1.46840 * 111.00228 * 124.23648 * 18 17 16 20 20 C 1.53034 * 109.52646 * 174.15905 * 19 18 17 21 21 C 1.53125 * 109.27777 * 59.18002 * 20 19 18 22 22 C 1.52996 * 109.52151 * 182.44300 * 21 20 19 23 23 F 1.39898 * 109.52160 * 62.25189 * 21 20 19 24 24 C 1.53118 * 109.15791 * 302.34597 * 21 20 19 25 25 C 1.46848 * 111.00139 * 0.02565 * 18 17 16 26 26 H 1.08997 * 109.46852 * 270.15034 * 1 2 3 27 27 H 1.08996 * 109.47175 * 30.15346 * 1 2 3 28 28 H 1.09004 * 109.47170 * 150.15394 * 1 2 3 29 29 H 1.08999 * 109.46945 * 30.24544 * 4 3 2 30 30 H 1.08992 * 109.47289 * 150.25018 * 4 3 2 31 31 H 1.08999 * 109.46892 * 299.99353 * 5 4 3 32 32 H 1.08992 * 109.47443 * 59.99888 * 5 4 3 33 33 H 1.08998 * 109.47791 * 299.99654 * 6 5 4 34 34 H 1.08999 * 109.47322 * 60.00156 * 6 5 4 35 35 H 0.97007 * 119.99641 * 180.02562 * 10 9 7 36 36 H 1.09001 * 109.46136 * 294.17916 * 19 18 17 37 37 H 1.09003 * 109.46270 * 54.14199 * 19 18 17 38 38 H 1.08998 * 109.50619 * 299.23798 * 20 19 18 39 39 H 1.08999 * 109.53700 * 179.14047 * 20 19 18 40 40 H 1.08998 * 109.46735 * 179.68556 * 22 21 20 41 41 H 1.09002 * 109.47233 * 299.67776 * 22 21 20 42 42 H 1.08998 * 109.47441 * 59.68214 * 22 21 20 43 43 H 1.09001 * 109.50624 * 297.71337 * 24 21 20 44 44 H 1.09002 * 109.53418 * 177.61532 * 24 21 20 45 45 H 1.09004 * 109.45805 * 305.85924 * 25 18 17 46 46 H 1.08994 * 109.46455 * 65.83204 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0900 0.0000 4 6 1.8622 2.5349 0.0008 5 6 1.7104 3.0225 -1.4415 6 6 1.2749 4.4893 -1.4406 7 6 1.1260 4.9698 -2.8612 8 1 1.3227 4.2966 -3.6824 9 6 0.7396 6.2693 -3.1124 10 7 0.5015 7.0896 -2.1124 11 14 0.5544 6.8647 -4.8732 12 1 -0.4708 6.0450 -5.5677 13 1 0.1330 8.2887 -4.8725 14 1 1.8543 6.7341 -5.5793 15 7 3.5162 0.6479 -0.0049 16 7 3.5212 -0.6373 -0.0032 17 6 2.2888 -1.0878 0.0034 18 7 1.8978 -2.4173 0.0066 19 6 1.0151 -2.7036 1.1446 20 6 0.4882 -4.1362 1.0356 21 6 1.6699 -5.1100 1.0247 22 6 1.1526 -6.5397 0.8546 23 9 2.3725 -5.0060 2.2299 24 6 2.5988 -4.7598 -0.1411 25 6 3.0644 -3.3091 0.0021 26 1 -0.3633 0.0027 1.0276 27 1 -0.3633 0.8886 -0.5162 28 1 -0.3634 -0.8914 -0.5115 29 1 0.9080 2.6307 0.5190 30 1 2.6145 3.1366 0.5106 31 1 2.6645 2.9268 -1.9597 32 1 0.9580 2.4208 -1.9512 33 1 0.3207 4.5848 -0.9225 34 1 2.0270 5.0913 -0.9308 35 1 0.2293 8.0037 -2.2892 36 1 1.5732 -2.5915 2.0742 37 1 0.1768 -2.0068 1.1383 38 1 -0.0817 -4.2452 0.1129 39 1 -0.1549 -4.3539 1.8883 40 1 1.9947 -7.2316 0.8413 41 1 0.4914 -6.7881 1.6849 42 1 0.6030 -6.6182 -0.0834 43 1 2.0621 -4.8785 -1.0824 44 1 3.4640 -5.4226 -0.1294 45 1 3.7147 -3.0521 -0.8342 46 1 3.6128 -3.1944 0.9370 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121305785.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:18 Heat of formation + Delta-G solvation = -1.660701 kcal Electronic energy + Delta-G solvation = -25957.572646 eV Core-core repulsion = 22217.590631 eV Total energy + Delta-G solvation = -3739.982015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.186 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.71471 -44.08231 -39.88912 -36.81524 -36.03578 -35.24410 -34.18625 -32.22007 -31.42113 -29.64857 -28.39951 -28.09021 -25.66793 -24.62080 -23.98483 -22.42543 -22.21513 -21.48432 -20.71863 -18.64363 -18.33660 -17.58212 -17.38070 -16.66450 -16.56956 -16.53742 -16.15404 -16.10164 -15.67379 -15.44189 -15.03685 -14.42986 -14.25059 -13.99844 -13.87989 -13.81837 -13.51875 -13.31963 -13.19814 -13.14288 -12.94530 -12.89432 -12.70581 -12.64587 -12.59163 -12.43191 -12.34243 -11.72050 -11.54494 -11.43835 -11.37639 -11.31503 -11.25357 -11.10803 -10.78482 -10.53008 -9.34872 -8.18718 -6.28804 0.69628 1.17875 1.40848 1.43399 1.51213 1.72660 2.42004 2.50988 3.14681 3.32460 3.38564 3.42413 3.61934 3.67796 3.73852 3.80390 3.98291 4.04932 4.13503 4.25542 4.27315 4.34457 4.37587 4.45332 4.50895 4.56904 4.61421 4.64308 4.71724 4.79595 4.86284 4.92819 5.00954 5.02041 5.03465 5.08617 5.17056 5.24512 5.31691 5.44867 5.52486 5.59085 5.75068 5.86451 6.09284 6.26738 6.86758 7.39802 7.69072 8.92409 Molecular weight = 310.19amu Principal moments of inertia in cm(-1) A = 0.031951 B = 0.002392 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.131839 B =11704.271726 C =11820.041233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.479 5.479 3 C 0.194 3.806 4 C -0.022 4.022 5 C -0.084 4.084 6 C 0.028 3.972 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.003 3.997 10 N -0.929 5.929 11 Si 0.960 3.040 12 H -0.266 1.266 13 H -0.282 1.282 14 H -0.272 1.272 15 N -0.328 5.328 16 N -0.362 5.362 17 C 0.353 3.647 18 N -0.439 5.439 19 C 0.044 3.956 20 C -0.127 4.127 21 C 0.103 3.897 22 C -0.166 4.166 23 F -0.229 7.229 24 C -0.129 4.129 25 C 0.070 3.930 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.008 0.992 34 H -0.005 1.005 35 H 0.264 0.736 36 H 0.033 0.967 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.522 -29.086 7.389 30.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.173 5.173 3 C -0.075 4.075 4 C -0.061 4.061 5 C -0.123 4.123 6 C -0.010 4.010 7 C -0.582 4.582 8 H 0.072 0.928 9 C -0.195 4.195 10 N -0.569 5.569 11 Si 0.785 3.215 12 H -0.190 1.190 13 H -0.207 1.207 14 H -0.198 1.198 15 N -0.167 5.167 16 N -0.207 5.207 17 C -0.005 4.005 18 N -0.163 5.163 19 C -0.082 4.082 20 C -0.164 4.164 21 C 0.085 3.915 22 C -0.223 4.223 23 F -0.210 7.210 24 C -0.167 4.167 25 C -0.057 4.057 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.132 0.868 29 H 0.122 0.878 30 H 0.110 0.890 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.026 0.974 34 H 0.014 0.986 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.121 0.879 38 H 0.133 0.867 39 H 0.122 0.878 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.115 0.885 43 H 0.128 0.872 44 H 0.115 0.885 45 H 0.099 0.901 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.346 -29.047 7.043 30.203 hybrid contribution -0.553 1.054 -0.043 1.191 sum -4.899 -27.993 7.000 29.268 Atomic orbital electron populations 1.22559 0.72807 1.06889 1.05704 1.46213 1.10054 1.04572 1.56498 1.25088 0.86405 0.92516 1.03508 1.20129 1.03226 0.83636 0.99155 1.21345 0.99970 0.97194 0.93794 1.18981 0.95328 0.91063 0.95581 1.21622 1.45894 0.96913 0.93811 0.92791 1.25891 0.95050 0.97090 1.01465 1.70066 1.47581 1.06368 1.32892 0.85583 0.78830 0.77316 0.79820 1.19036 1.20693 1.19765 1.73898 1.19302 1.03139 1.20320 1.74441 1.17467 1.03576 1.25195 1.22846 0.86688 0.88302 1.02625 1.58851 1.19531 0.95460 1.42458 1.22506 0.96297 1.00161 0.89284 1.22244 0.97169 0.90468 1.06556 1.21295 0.91501 0.98545 0.80162 1.22314 1.02661 0.92550 1.04763 1.92827 1.81412 1.97497 1.49226 1.22271 1.01195 0.93528 0.99679 1.22013 0.89688 0.91935 1.02024 0.87760 0.88186 0.86836 0.87841 0.89036 0.94304 0.92731 0.97394 0.98614 0.92725 0.94831 0.87896 0.86721 0.87794 0.91205 0.90804 0.88530 0.87162 0.88470 0.90071 0.94525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.01 9.16 127.77 1.17 2.18 16 2 N -0.48 -13.07 3.21 -538.18 -1.73 -14.80 16 3 C 0.19 6.64 7.32 137.64 1.01 7.64 16 4 C -0.02 -0.73 5.43 29.85 0.16 -0.57 16 5 C -0.08 -3.44 5.14 30.60 0.16 -3.28 16 6 C 0.03 1.41 4.97 29.85 0.15 1.56 16 7 C -0.54 -30.76 9.11 25.60 0.23 -30.53 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 9 C 0.00 0.18 5.46 84.66 0.46 0.64 16 10 N -0.93 -55.57 13.29 21.45 0.28 -55.28 16 11 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 13 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 14 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 15 N -0.33 -13.19 12.18 -49.53 -0.60 -13.79 16 16 N -0.36 -13.53 11.24 -58.00 -0.65 -14.19 16 17 C 0.35 10.39 7.21 260.11 1.88 12.27 16 18 N -0.44 -9.36 4.70 -706.17 -3.32 -12.67 16 19 C 0.04 0.69 5.17 86.33 0.45 1.13 16 20 C -0.13 -1.17 5.16 30.65 0.16 -1.02 16 21 C 0.10 1.19 1.25 -10.71 -0.01 1.18 16 22 C -0.17 -1.05 8.94 71.98 0.64 -0.41 16 23 F -0.23 -4.30 15.97 44.97 0.72 -3.58 16 24 C -0.13 -1.61 5.16 30.65 0.16 -1.45 16 25 C 0.07 1.47 4.77 86.32 0.41 1.88 16 26 H 0.10 1.19 7.75 -2.39 -0.02 1.17 16 27 H 0.10 1.73 7.91 -2.39 -0.02 1.71 16 28 H 0.11 1.39 7.66 -2.39 -0.02 1.37 16 29 H 0.10 2.89 7.95 -2.39 -0.02 2.88 16 30 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 31 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 36 H 0.03 0.68 7.88 -2.39 -0.02 0.66 16 37 H 0.10 1.25 5.24 -2.39 -0.01 1.24 16 38 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.08 1.93 7.92 -2.39 -0.02 1.91 16 46 H 0.04 0.92 7.87 -2.39 -0.02 0.90 16 Total: -1.00 -75.69 369.61 4.70 -70.99 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 0.95 Total: 5.96 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 7.02 Total: -8.77 kcal Atomic # 7 Polarization: -104.71 SS G_CDS: -6.01 Total: -110.73 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.72 Total: -3.58 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -75.69 4.70 -70.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121305785.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.331 kcal (2) G-P(sol) polarization free energy of solvation -75.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds