Wall clock time and date at job start Fri Apr 10 2020 22:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.46740 * 2 1 4 4 C 1.36742 * 127.14213 * 89.97362 * 3 2 1 5 5 C 1.50698 * 126.34121 * 0.02562 * 4 3 2 6 6 C 1.53006 * 109.47184 * 90.00200 * 5 4 3 7 7 C 1.52997 * 109.47127 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47055 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00290 * 0.02562 * 8 7 6 10 10 C 1.37887 * 120.00079 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99685 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00129 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46879 * 60.00177 * 12 10 8 14 14 H 1.48494 * 109.47196 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47151 * 300.00589 * 12 10 8 16 16 N 1.30292 * 107.30805 * 180.25762 * 4 3 2 17 17 N 1.28534 * 110.05192 * 359.56411 * 16 4 3 18 18 C 1.31212 * 109.85821 * 0.44746 * 17 16 4 19 19 N 1.38583 * 126.47077 * 179.72897 * 18 17 16 20 20 C 1.47848 * 110.99739 * 120.84073 * 19 18 17 21 21 C 1.54904 * 104.79517 * 213.63529 * 20 19 18 22 22 C 1.55142 * 101.65329 * 37.07511 * 21 20 19 23 23 H 1.09000 * 110.70679 * 82.72770 * 22 21 20 24 24 C 1.52999 * 110.85552 * 205.89029 * 22 21 20 25 25 F 1.39897 * 109.47517 * 293.68459 * 24 22 21 26 26 C 1.47443 * 110.99982 * 0.02562 * 19 18 17 27 27 H 1.09007 * 109.47084 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47451 * 299.99608 * 1 2 3 29 29 H 1.08997 * 109.47447 * 60.00585 * 1 2 3 30 30 H 1.08994 * 109.47249 * 239.99936 * 2 1 3 31 31 H 1.09003 * 109.47049 * 119.99509 * 2 1 3 32 32 H 1.09001 * 109.47612 * 330.00254 * 5 4 3 33 33 H 1.09001 * 109.47122 * 210.00086 * 5 4 3 34 34 H 1.09001 * 109.47002 * 299.99404 * 6 5 4 35 35 H 1.08993 * 109.46955 * 59.99842 * 6 5 4 36 36 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 37 37 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 38 38 H 0.96999 * 119.99910 * 179.97438 * 11 10 8 39 39 H 1.08997 * 110.37921 * 332.46802 * 20 19 18 40 40 H 1.09007 * 110.37186 * 94.81260 * 20 19 18 41 41 H 1.09000 * 110.99513 * 278.98007 * 21 20 19 42 42 H 1.09000 * 111.01948 * 155.17702 * 21 20 19 43 43 H 1.09005 * 109.47222 * 53.68687 * 24 22 21 44 44 H 1.08998 * 109.46900 * 173.68019 * 24 22 21 45 45 H 1.08998 * 109.88757 * 242.66211 * 26 19 18 46 46 H 1.09002 * 109.88653 * 3.68491 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2929 2.1598 1.0900 5 6 2.1500 1.7559 2.5348 6 6 3.4619 1.1390 3.0241 7 6 3.3171 0.7295 4.4911 8 6 4.6090 0.1214 4.9728 9 1 5.4495 0.0358 4.3001 10 6 4.7183 -0.3250 6.2729 11 7 3.6950 -0.2204 7.0923 12 14 6.3200 -1.0782 6.8702 13 1 7.4141 -0.0828 6.7394 14 1 6.1793 -1.4758 8.2940 15 1 6.6396 -2.2754 6.0517 16 7 2.6963 3.3172 0.6480 17 7 2.7039 3.3197 -0.6374 18 6 2.2933 2.1578 -1.0878 19 7 2.1635 1.7888 -2.4173 20 6 3.0049 0.6128 -2.7253 21 6 3.4613 0.8257 -4.1902 22 6 3.6742 2.3619 -4.2319 23 1 4.6551 2.6259 -3.8366 24 6 3.5050 2.8968 -5.6554 25 9 4.5319 2.4001 -6.4654 26 6 2.5549 2.8929 -3.3127 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.3471 1.0250 2.6301 33 1 1.9151 2.6342 3.1361 34 1 3.6968 0.2607 2.4229 35 1 4.2649 1.8699 2.9289 36 1 3.0823 1.6081 5.0921 37 1 2.5139 -0.0012 4.5868 38 1 3.7717 -0.5347 8.0067 39 1 3.8677 0.5787 -2.0602 40 1 2.4217 -0.3041 -2.6391 41 1 2.6835 0.5202 -4.8900 42 1 4.3932 0.2968 -4.3902 43 1 2.5418 2.5758 -6.0521 44 1 3.5475 3.9858 -5.6417 45 1 1.6998 3.2049 -3.9123 46 1 2.9222 3.7343 -2.7251 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121692744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:26 Heat of formation + Delta-G solvation = 16.592398 kcal Electronic energy + Delta-G solvation = -25881.858810 eV Core-core repulsion = 22142.668309 eV Total energy + Delta-G solvation = -3739.190501 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 310.186 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -47.96923 -42.93446 -39.46427 -35.87693 -34.87749 -33.42609 -32.28443 -30.59023 -30.43281 -29.21899 -26.86471 -25.97127 -24.44441 -23.57837 -22.57810 -21.44132 -20.65809 -20.49669 -20.03450 -17.70169 -16.68680 -16.44093 -16.30180 -16.18814 -16.06503 -15.68697 -14.82835 -14.58036 -14.50701 -14.05718 -13.92800 -13.73652 -13.48874 -13.35255 -13.12037 -12.57020 -12.39990 -12.26436 -12.01138 -11.96835 -11.62995 -11.53504 -11.43753 -11.27001 -11.06187 -10.92882 -10.87238 -10.84834 -10.58908 -10.46845 -10.06948 -9.83333 -9.74500 -9.39904 -9.14885 -8.37884 -8.19092 -6.03229 -4.05659 1.84434 2.25132 2.97598 3.31357 3.36015 3.38703 3.49784 3.84168 3.96059 4.14397 4.41752 4.43126 4.58011 4.59189 4.63738 4.74304 4.78937 4.90528 4.97486 5.03393 5.09448 5.11123 5.22290 5.29978 5.32823 5.39892 5.43045 5.46462 5.53684 5.61619 5.77396 5.83414 5.85989 5.95447 6.03933 6.09777 6.33645 6.59214 6.60268 6.73311 7.00286 7.17447 7.61741 7.75110 7.95797 8.38170 8.93155 9.00604 9.58526 11.07977 Molecular weight = 310.19amu Principal moments of inertia in cm(-1) A = 0.018988 B = 0.002694 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.228326 B =10391.158334 C =10903.609548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.100 3.900 3 N -0.476 5.476 4 C 0.204 3.796 5 C -0.036 4.036 6 C -0.102 4.102 7 C 0.023 3.977 8 C -0.522 4.522 9 H 0.053 0.947 10 C 0.058 3.942 11 N -0.895 5.895 12 Si 0.892 3.108 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.277 1.277 16 N -0.289 5.289 17 N -0.326 5.326 18 C 0.338 3.662 19 N -0.440 5.440 20 C 0.039 3.961 21 C -0.119 4.119 22 C -0.144 4.144 23 H 0.093 0.907 24 C 0.075 3.925 25 F -0.217 7.217 26 C 0.054 3.946 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.044 0.956 35 H 0.057 0.943 36 H 0.020 0.980 37 H 0.017 0.983 38 H 0.261 0.739 39 H 0.059 0.941 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.512 0.678 -24.733 25.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.023 4.023 3 N -0.171 5.171 4 C -0.063 4.063 5 C -0.076 4.076 6 C -0.141 4.141 7 C -0.014 4.014 8 C -0.560 4.560 9 H 0.072 0.928 10 C -0.143 4.143 11 N -0.534 5.534 12 Si 0.719 3.281 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.203 1.203 16 N -0.127 5.127 17 N -0.170 5.170 18 C -0.019 4.019 19 N -0.164 5.164 20 C -0.088 4.088 21 C -0.157 4.157 22 C -0.164 4.164 23 H 0.112 0.888 24 C 0.020 3.980 25 F -0.198 7.198 26 C -0.073 4.073 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.039 0.961 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.108 0.892 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.586 1.922 -24.653 25.589 hybrid contribution 1.097 -1.709 0.498 2.091 sum -5.489 0.213 -24.155 24.772 Atomic orbital electron populations 1.22116 0.93629 1.03300 1.03365 1.21992 0.96179 0.78976 1.05108 1.46255 1.51306 1.13919 1.05632 1.25260 1.01091 0.87876 0.92110 1.20358 1.01169 1.02312 0.83728 1.21650 0.93619 0.98748 1.00054 1.19092 0.97194 0.96624 0.88471 1.21177 0.98559 1.39893 0.96381 0.92825 1.25008 0.96436 0.96014 0.96882 1.69945 1.30207 1.47236 1.06015 0.86665 0.84045 0.79661 0.77688 1.20184 1.21246 1.20307 1.74000 1.18877 1.17760 1.02059 1.74387 1.21151 1.17451 1.04027 1.22580 1.01992 0.89977 0.87384 1.60334 1.51608 1.07209 0.97228 1.23264 0.95515 0.93031 0.96999 1.22761 1.02496 0.94884 0.95586 1.23029 1.01090 0.96617 0.95677 0.88848 1.21926 0.88788 0.99390 0.87936 1.92774 1.62348 1.89832 1.74820 1.22821 0.97344 0.93361 0.93785 0.90314 0.91589 0.91658 0.88974 0.87933 0.90416 0.88462 0.93717 0.92470 0.96139 0.96508 0.92898 0.92233 0.88975 0.89778 0.89603 0.90278 0.90242 0.89159 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.24 37.16 0.38 -1.11 16 2 C 0.10 1.04 6.50 -4.04 -0.03 1.01 16 3 N -0.48 -6.67 2.81 -114.09 -0.32 -6.99 16 4 C 0.20 3.43 7.32 -154.01 -1.13 2.30 16 5 C -0.04 -0.60 5.43 -27.88 -0.15 -0.75 16 6 C -0.10 -2.04 5.14 -26.73 -0.14 -2.18 16 7 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 8 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 9 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 11 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 12 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 N -0.29 -5.48 12.18 32.99 0.40 -5.08 16 17 N -0.33 -5.66 10.47 30.31 0.32 -5.34 16 18 C 0.34 4.84 6.98 -318.87 -2.23 2.62 16 19 N -0.44 -4.75 5.22 -171.33 -0.90 -5.64 16 20 C 0.04 0.33 5.51 -2.30 -0.01 0.32 16 21 C -0.12 -0.82 6.45 -24.59 -0.16 -0.97 16 22 C -0.14 -1.07 3.29 -88.82 -0.29 -1.37 16 23 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 24 C 0.07 0.45 6.82 37.16 0.25 0.71 16 25 F -0.22 -1.92 17.26 2.25 0.04 -1.88 16 26 C 0.05 0.49 6.41 -2.86 -0.02 0.48 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.77 5.44 -51.93 -0.28 0.49 16 31 H 0.10 1.09 7.88 -51.93 -0.41 0.68 16 32 H 0.08 1.15 7.92 -51.93 -0.41 0.74 16 33 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.06 0.62 7.79 -51.93 -0.40 0.21 16 40 H 0.09 0.65 6.68 -51.92 -0.35 0.31 16 41 H 0.08 0.49 8.03 -51.93 -0.42 0.07 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.35 8.11 -51.93 -0.42 -0.07 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.67 7.82 -51.93 -0.41 0.26 16 46 H 0.10 1.14 6.32 -51.93 -0.33 0.81 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -33.20 373.31 -10.80 -44.00 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -7.62 Total: -3.64 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -4.06 Total: -11.82 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.24 Total: -48.76 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.20 -10.80 -44.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121692744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.593 kcal (2) G-P(sol) polarization free energy of solvation -33.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds