Wall clock time and date at job start Fri Apr 10 2020 22:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 110.44016 * 2 1 4 4 C 1.54095 * 110.49007 * 122.54793 * 2 1 3 5 5 O 1.43744 * 107.29961 * 120.70170 * 4 2 1 6 6 C 1.44380 * 106.97277 * 333.49025 * 5 4 2 7 7 H 1.08997 * 110.61925 * 281.39902 * 6 5 4 8 8 C 1.53001 * 110.61829 * 158.55509 * 6 5 4 9 9 C 1.50700 * 109.46633 * 68.58351 * 8 6 5 10 10 O 1.21275 * 120.00315 * 359.97438 * 9 8 6 11 11 N 1.34783 * 119.99939 * 180.02562 * 9 8 6 12 12 C 1.46497 * 119.99989 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.50254 * 35.06091 * 12 11 9 14 14 C 1.53041 * 109.49657 * 155.16064 * 12 11 9 15 15 C 1.53038 * 109.53719 * 181.31557 * 14 12 11 16 16 C 1.53631 * 109.24213 * 298.50741 * 15 14 12 17 17 N 1.46923 * 108.54036 * 54.85570 * 16 15 14 18 18 C 1.36940 * 120.62812 * 126.37121 * 17 16 15 19 19 H 1.07992 * 119.99796 * 332.04606 * 18 17 16 20 20 C 1.38808 * 119.99786 * 152.04325 * 18 17 16 21 21 N 1.31614 * 120.00335 * 342.64662 * 20 18 17 22 22 Si 1.86804 * 119.99838 * 162.64095 * 20 18 17 23 23 H 1.48506 * 109.47210 * 270.00074 * 22 20 18 24 24 H 1.48502 * 109.46891 * 30.00315 * 22 20 18 25 25 H 1.48502 * 109.47171 * 150.00370 * 22 20 18 26 26 C 1.46928 * 118.74171 * 306.09682 * 17 16 15 27 27 C 1.54994 * 110.34262 * 237.30879 * 2 1 3 28 28 H 1.08999 * 109.47020 * 298.90948 * 1 2 3 29 29 H 1.09006 * 109.46783 * 58.90965 * 1 2 3 30 30 H 1.08996 * 109.47251 * 178.90261 * 1 2 3 31 31 H 1.08995 * 109.47054 * 181.09078 * 3 2 1 32 32 H 1.08997 * 109.47128 * 301.09277 * 3 2 1 33 33 H 1.09003 * 109.46505 * 61.08960 * 3 2 1 34 34 H 1.09008 * 109.87429 * 1.28417 * 4 2 1 35 35 H 1.08998 * 110.01003 * 240.20090 * 4 2 1 36 36 H 1.08999 * 109.47262 * 308.58560 * 8 6 5 37 37 H 1.08999 * 109.47471 * 188.57850 * 8 6 5 38 38 H 0.97002 * 119.99515 * 359.97438 * 11 9 8 39 39 H 1.09010 * 109.46048 * 301.33256 * 14 12 11 40 40 H 1.08998 * 109.46443 * 61.28903 * 14 12 11 41 41 H 1.08994 * 109.50474 * 58.58488 * 15 14 12 42 42 H 1.09007 * 109.49914 * 178.64882 * 15 14 12 43 43 H 1.09000 * 109.73449 * 295.11703 * 16 15 14 44 44 H 1.08998 * 109.66186 * 174.55352 * 16 15 14 45 45 H 0.97001 * 120.00091 * 179.97438 * 21 20 18 46 46 H 1.08999 * 109.58917 * 173.65023 * 26 17 16 47 47 H 1.09003 * 109.58668 * 293.93191 * 26 17 16 48 48 H 1.08998 * 110.84255 * 143.90455 * 27 2 1 49 49 H 1.08999 * 111.04475 * 20.24070 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0643 1.4337 0.0000 4 6 2.0694 -0.7766 1.2168 5 8 2.8754 -1.8548 0.7126 6 6 2.3780 -2.1724 -0.6050 7 1 1.4713 -2.7736 -0.5385 8 6 3.4464 -2.9004 -1.4232 9 6 3.6769 -4.2714 -0.8414 10 8 3.0489 -4.6305 0.1319 11 7 4.5818 -5.0980 -1.4022 12 6 4.8054 -6.4309 -0.8371 13 1 3.8639 -6.8280 -0.4578 14 6 5.3524 -7.3608 -1.9225 15 6 5.5555 -8.7620 -1.3415 16 6 6.5830 -8.6933 -0.2015 17 7 6.1298 -7.6947 0.7764 18 6 6.0049 -8.0215 2.1004 19 1 5.7915 -9.0405 2.3872 20 6 6.1527 -7.0428 3.0736 21 7 6.7374 -5.9018 2.7762 22 14 5.5215 -7.3452 4.8056 23 1 4.1139 -6.8827 4.9073 24 1 5.5889 -8.7970 5.1105 25 1 6.3599 -6.5961 5.7758 26 6 5.8190 -6.3373 0.3078 27 6 2.0688 -0.7849 -1.2231 28 1 -0.3633 0.4968 0.8996 29 1 -0.3633 0.5307 -0.8801 30 1 -0.3633 -1.0274 -0.0197 31 1 3.1539 1.4153 -0.0196 32 1 1.6939 1.9595 -0.8800 33 1 1.7256 1.9475 0.8997 34 1 1.2390 -1.1757 1.7994 35 1 2.6767 -0.1195 1.8392 36 1 4.3762 -2.3323 -1.3940 37 1 3.1111 -2.9957 -2.4559 38 1 5.0844 -4.8106 -2.1805 39 1 4.6440 -7.4098 -2.7496 40 1 6.3059 -6.9758 -2.2839 41 1 4.6071 -9.1377 -0.9576 42 1 5.9224 -9.4296 -2.1212 43 1 7.5548 -8.4007 -0.5990 44 1 6.6615 -9.6677 0.2807 45 1 6.8403 -5.2178 3.4562 46 1 5.3934 -5.7567 1.1262 47 1 6.7303 -5.8555 -0.0467 48 1 2.9754 -0.3217 -1.6124 49 1 1.3099 -0.8662 -2.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007914708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:39 Heat of formation + Delta-G solvation = -77.773474 kcal Electronic energy + Delta-G solvation = -27052.406291 eV Core-core repulsion = 23400.291333 eV Total energy + Delta-G solvation = -3652.114959 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.14017 -39.04075 -37.16042 -34.63561 -33.95637 -32.61348 -32.14525 -29.96850 -28.98405 -27.62381 -27.08417 -25.81109 -25.18510 -22.47919 -22.01771 -21.11045 -19.91816 -19.50586 -19.06436 -16.90695 -16.68438 -16.12091 -15.76288 -15.29110 -14.97149 -14.77860 -14.21513 -14.04347 -13.91047 -13.71081 -13.49207 -13.45385 -13.13890 -12.95756 -12.69741 -12.32567 -12.24803 -12.08209 -11.82147 -11.80543 -11.69631 -11.38946 -10.94503 -10.89156 -10.81650 -10.66576 -10.65216 -10.62821 -10.41058 -10.17815 -9.89633 -9.86539 -9.45388 -9.43258 -9.16526 -8.39977 -8.33728 -6.57736 -5.66940 -3.10707 3.20651 3.49139 3.55781 3.57286 3.64496 3.92494 4.25076 4.52196 4.61709 4.68561 4.89382 5.00121 5.13093 5.14375 5.33877 5.38014 5.41322 5.43819 5.48196 5.49006 5.52713 5.61385 5.65135 5.67599 5.71024 5.72308 5.74985 5.82893 5.89501 5.97936 6.04217 6.13427 6.15814 6.20611 6.39450 6.47547 6.58826 6.77343 6.83909 7.01570 7.06874 7.08615 7.40281 7.83261 7.92369 8.08030 8.56873 8.83619 9.31487 9.95592 10.50332 11.40765 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014107 B = 0.003860 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.416134 B = 7252.929230 C = 8746.564953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 C -0.136 4.136 4 C 0.053 3.947 5 O -0.353 6.353 6 C 0.095 3.905 7 H 0.075 0.925 8 C -0.136 4.136 9 C 0.509 3.491 10 O -0.521 6.521 11 N -0.725 5.725 12 C 0.118 3.882 13 H 0.080 0.920 14 C -0.115 4.115 15 C -0.131 4.131 16 C 0.142 3.858 17 N -0.589 5.589 18 C -0.259 4.259 19 H 0.066 0.934 20 C 0.008 3.992 21 N -0.897 5.897 22 Si 0.901 3.099 23 H -0.285 1.285 24 H -0.279 1.279 25 H -0.292 1.292 26 C 0.167 3.833 27 C -0.143 4.143 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.390 0.610 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.018 0.982 44 H 0.055 0.945 45 H 0.254 0.746 46 H 0.095 0.905 47 H 0.015 0.985 48 H 0.079 0.921 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.087 11.894 -13.397 20.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.102 4.102 3 C -0.193 4.193 4 C -0.024 4.024 5 O -0.272 6.272 6 C 0.037 3.963 7 H 0.093 0.907 8 C -0.176 4.176 9 C 0.294 3.706 10 O -0.396 6.396 11 N -0.377 5.377 12 C 0.013 3.987 13 H 0.098 0.902 14 C -0.153 4.153 15 C -0.171 4.171 16 C 0.016 3.984 17 N -0.312 5.312 18 C -0.388 4.388 19 H 0.084 0.916 20 C -0.191 4.191 21 N -0.541 5.541 22 Si 0.731 3.269 23 H -0.212 1.212 24 H -0.205 1.205 25 H -0.218 1.218 26 C 0.040 3.960 27 C -0.181 4.181 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.223 0.777 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.035 0.965 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.113 0.887 47 H 0.033 0.967 48 H 0.098 0.902 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.326 11.642 -12.420 19.411 hybrid contribution -0.165 0.264 0.383 0.494 sum -9.490 11.906 -12.037 19.409 Atomic orbital electron populations 1.21877 0.93630 1.02166 1.01914 1.21983 0.96311 0.96371 0.95534 1.21833 1.01188 0.94460 1.01819 1.23290 0.95171 0.88727 0.95215 1.89072 1.55379 1.51987 1.30725 1.22771 0.96145 0.94201 0.83152 0.90702 1.21740 1.01295 0.94674 0.99938 1.20357 0.79998 0.86227 0.84066 1.90761 1.47979 1.75712 1.25177 1.46083 1.41573 1.16947 1.33058 1.21907 1.01389 0.80294 0.95139 0.90220 1.21670 1.00125 0.96432 0.97101 1.22077 1.01218 0.95077 0.98720 1.21037 0.93533 0.93793 0.90051 1.43990 1.75968 1.07490 1.03744 1.19140 1.42839 0.95333 0.81502 0.91649 1.25021 0.98761 0.97429 0.97910 1.70007 1.43308 1.07267 1.33505 0.86317 0.78796 0.77457 0.84349 1.21236 1.20463 1.21800 1.21088 0.93286 0.87238 0.94377 1.23363 1.01754 0.95528 0.97410 0.92331 0.92381 0.92255 0.92139 0.92483 0.92418 0.92477 0.90030 0.88265 0.88114 0.77715 0.93247 0.92359 0.92164 0.92768 0.96455 0.92678 0.93641 0.88657 0.96670 0.90248 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.25 37.16 0.31 -0.84 16 2 C -0.10 -0.97 0.99 -152.88 -0.15 -1.13 16 3 C -0.14 -1.09 8.28 37.16 0.31 -0.78 16 4 C 0.05 0.68 7.03 37.73 0.27 0.95 16 5 O -0.35 -6.02 10.75 -43.36 -0.47 -6.49 16 6 C 0.10 1.28 2.77 -25.67 -0.07 1.21 16 7 H 0.08 1.08 7.96 -51.93 -0.41 0.67 16 8 C -0.14 -1.73 5.47 -27.88 -0.15 -1.88 16 9 C 0.51 9.17 7.72 -10.98 -0.08 9.09 16 10 O -0.52 -12.21 15.28 -2.57 -0.04 -12.25 16 11 N -0.73 -12.17 5.08 -53.69 -0.27 -12.44 16 12 C 0.12 2.39 2.60 -67.81 -0.18 2.22 16 13 H 0.08 1.85 7.58 -51.93 -0.39 1.45 16 14 C -0.12 -1.91 5.35 -26.69 -0.14 -2.05 16 15 C -0.13 -2.29 6.10 -26.38 -0.16 -2.45 16 16 C 0.14 3.05 6.54 -3.48 -0.02 3.03 16 17 N -0.59 -15.52 2.99 -172.05 -0.51 -16.04 16 18 C -0.26 -7.52 9.58 -15.06 -0.14 -7.66 16 19 H 0.07 1.85 7.89 -52.49 -0.41 1.44 16 20 C 0.01 0.24 4.91 -17.43 -0.09 0.15 16 21 N -0.90 -27.78 11.19 55.49 0.62 -27.16 16 22 Si 0.90 23.32 29.59 -169.99 -5.03 18.29 16 23 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 26 C 0.17 4.25 4.88 -3.71 -0.02 4.23 16 27 C -0.14 -1.36 5.71 -24.62 -0.14 -1.50 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.73 7.69 -51.92 -0.40 0.33 16 35 H 0.08 0.98 7.70 -51.93 -0.40 0.58 16 36 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.39 5.02 8.60 -40.82 -0.35 4.67 16 39 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 45 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.10 2.88 6.04 -51.93 -0.31 2.57 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.08 0.70 7.79 -51.93 -0.40 0.29 16 49 H 0.08 0.62 7.86 -51.93 -0.41 0.21 16 LS Contribution 381.73 15.07 5.75 5.75 Total: -1.00 -35.75 381.73 -9.38 -45.14 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -8.96 Total: 2.61 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -0.47 Total: 2.59 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.17 Total: -55.64 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.51 Total: -18.74 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -5.03 Total: 18.29 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.75 -9.38 -45.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007914708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.638 kcal (2) G-P(sol) polarization free energy of solvation -35.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds