Wall clock time and date at job start Fri Apr 10 2020 22:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 110.44016 * 2 1 4 4 C 1.54095 * 110.49007 * 122.54793 * 2 1 3 5 5 O 1.43744 * 107.29961 * 120.70170 * 4 2 1 6 6 C 1.44380 * 106.97277 * 333.49025 * 5 4 2 7 7 H 1.08997 * 110.61925 * 281.39902 * 6 5 4 8 8 C 1.53001 * 110.61829 * 158.55509 * 6 5 4 9 9 C 1.50700 * 109.46633 * 68.58351 * 8 6 5 10 10 O 1.21275 * 120.00315 * 359.97438 * 9 8 6 11 11 N 1.34783 * 119.99939 * 180.02562 * 9 8 6 12 12 C 1.46497 * 119.99989 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.50254 * 35.06091 * 12 11 9 14 14 C 1.53041 * 109.49657 * 155.16064 * 12 11 9 15 15 C 1.53038 * 109.53719 * 181.31557 * 14 12 11 16 16 C 1.53631 * 109.24213 * 298.50741 * 15 14 12 17 17 N 1.46923 * 108.54036 * 54.85570 * 16 15 14 18 18 C 1.36940 * 120.62812 * 126.37121 * 17 16 15 19 19 H 1.07992 * 119.99796 * 332.04606 * 18 17 16 20 20 C 1.38808 * 119.99786 * 152.04325 * 18 17 16 21 21 N 1.31614 * 120.00335 * 342.64662 * 20 18 17 22 22 Si 1.86804 * 119.99838 * 162.64095 * 20 18 17 23 23 H 1.48506 * 109.47210 * 270.00074 * 22 20 18 24 24 H 1.48502 * 109.46891 * 30.00315 * 22 20 18 25 25 H 1.48502 * 109.47171 * 150.00370 * 22 20 18 26 26 C 1.46928 * 118.74171 * 306.09682 * 17 16 15 27 27 C 1.54994 * 110.34262 * 237.30879 * 2 1 3 28 28 H 1.08999 * 109.47020 * 298.90948 * 1 2 3 29 29 H 1.09006 * 109.46783 * 58.90965 * 1 2 3 30 30 H 1.08996 * 109.47251 * 178.90261 * 1 2 3 31 31 H 1.08995 * 109.47054 * 181.09078 * 3 2 1 32 32 H 1.08997 * 109.47128 * 301.09277 * 3 2 1 33 33 H 1.09003 * 109.46505 * 61.08960 * 3 2 1 34 34 H 1.09008 * 109.87429 * 1.28417 * 4 2 1 35 35 H 1.08998 * 110.01003 * 240.20090 * 4 2 1 36 36 H 1.08999 * 109.47262 * 308.58560 * 8 6 5 37 37 H 1.08999 * 109.47471 * 188.57850 * 8 6 5 38 38 H 0.97002 * 119.99515 * 359.97438 * 11 9 8 39 39 H 1.09010 * 109.46048 * 301.33256 * 14 12 11 40 40 H 1.08998 * 109.46443 * 61.28903 * 14 12 11 41 41 H 1.08994 * 109.50474 * 58.58488 * 15 14 12 42 42 H 1.09007 * 109.49914 * 178.64882 * 15 14 12 43 43 H 1.09000 * 109.73449 * 295.11703 * 16 15 14 44 44 H 1.08998 * 109.66186 * 174.55352 * 16 15 14 45 45 H 0.97001 * 120.00091 * 179.97438 * 21 20 18 46 46 H 1.08999 * 109.58917 * 173.65023 * 26 17 16 47 47 H 1.09003 * 109.58668 * 293.93191 * 26 17 16 48 48 H 1.08998 * 110.84255 * 143.90455 * 27 2 1 49 49 H 1.08999 * 111.04475 * 20.24070 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0643 1.4337 0.0000 4 6 2.0694 -0.7766 1.2168 5 8 2.8754 -1.8548 0.7126 6 6 2.3780 -2.1724 -0.6050 7 1 1.4713 -2.7736 -0.5385 8 6 3.4464 -2.9004 -1.4232 9 6 3.6769 -4.2714 -0.8414 10 8 3.0489 -4.6305 0.1319 11 7 4.5818 -5.0980 -1.4022 12 6 4.8054 -6.4309 -0.8371 13 1 3.8639 -6.8280 -0.4578 14 6 5.3524 -7.3608 -1.9225 15 6 5.5555 -8.7620 -1.3415 16 6 6.5830 -8.6933 -0.2015 17 7 6.1298 -7.6947 0.7764 18 6 6.0049 -8.0215 2.1004 19 1 5.7915 -9.0405 2.3872 20 6 6.1527 -7.0428 3.0736 21 7 6.7374 -5.9018 2.7762 22 14 5.5215 -7.3452 4.8056 23 1 4.1139 -6.8827 4.9073 24 1 5.5889 -8.7970 5.1105 25 1 6.3599 -6.5961 5.7758 26 6 5.8190 -6.3373 0.3078 27 6 2.0688 -0.7849 -1.2231 28 1 -0.3633 0.4968 0.8996 29 1 -0.3633 0.5307 -0.8801 30 1 -0.3633 -1.0274 -0.0197 31 1 3.1539 1.4153 -0.0196 32 1 1.6939 1.9595 -0.8800 33 1 1.7256 1.9475 0.8997 34 1 1.2390 -1.1757 1.7994 35 1 2.6767 -0.1195 1.8392 36 1 4.3762 -2.3323 -1.3940 37 1 3.1111 -2.9957 -2.4559 38 1 5.0844 -4.8106 -2.1805 39 1 4.6440 -7.4098 -2.7496 40 1 6.3059 -6.9758 -2.2839 41 1 4.6071 -9.1377 -0.9576 42 1 5.9224 -9.4296 -2.1212 43 1 7.5548 -8.4007 -0.5990 44 1 6.6615 -9.6677 0.2807 45 1 6.8403 -5.2178 3.4562 46 1 5.3934 -5.7567 1.1262 47 1 6.7303 -5.8555 -0.0467 48 1 2.9754 -0.3217 -1.6124 49 1 1.3099 -0.8662 -2.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007914708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:38 Heat of formation + Delta-G solvation = -102.856376 kcal Electronic energy + Delta-G solvation = -27053.493968 eV Core-core repulsion = 23400.291333 eV Total energy + Delta-G solvation = -3653.202635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.26890 -40.40915 -38.85348 -35.79334 -35.49633 -34.42161 -33.30574 -31.90676 -30.55735 -28.28181 -28.08248 -27.24902 -26.77464 -24.04235 -23.76487 -22.36239 -21.34741 -20.87418 -20.22477 -18.76026 -18.14350 -17.30458 -17.24512 -16.66563 -16.37999 -16.17521 -15.84065 -15.52552 -15.26808 -14.96016 -14.80631 -14.52737 -14.39033 -14.18821 -14.09330 -13.98512 -13.57156 -13.46944 -12.96384 -12.91682 -12.75374 -12.71887 -12.45868 -12.45408 -12.27369 -12.24513 -12.05497 -11.70709 -11.68882 -11.58995 -11.58005 -11.49334 -11.26037 -10.69190 -10.58514 -10.54654 -10.01529 -8.71311 -7.91188 -5.37368 1.36297 1.43086 1.48444 1.79443 2.29170 2.47431 2.96513 3.25084 3.44124 3.65591 3.76709 3.87057 3.90626 4.00463 4.02509 4.14676 4.19991 4.27450 4.36320 4.47424 4.48545 4.57998 4.62677 4.65409 4.75872 4.77791 4.79775 4.81872 4.86752 4.92550 5.01643 5.03186 5.08345 5.13634 5.20102 5.20873 5.23818 5.30290 5.34683 5.43550 5.51211 5.54223 5.60129 5.80670 6.06138 6.34285 6.73499 7.09758 7.47596 7.83794 8.32222 9.12943 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014107 B = 0.003860 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.416134 B = 7252.929230 C = 8746.564953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 C -0.132 4.132 4 C 0.042 3.958 5 O -0.402 6.402 6 C 0.084 3.916 7 H 0.054 0.946 8 C -0.124 4.124 9 C 0.498 3.502 10 O -0.586 6.586 11 N -0.712 5.712 12 C 0.131 3.869 13 H 0.045 0.955 14 C -0.105 4.105 15 C -0.122 4.122 16 C 0.135 3.865 17 N -0.611 5.611 18 C -0.266 4.266 19 H 0.069 0.931 20 C -0.050 4.050 21 N -0.930 5.930 22 Si 0.960 3.040 23 H -0.298 1.298 24 H -0.258 1.258 25 H -0.290 1.290 26 C 0.180 3.820 27 C -0.129 4.129 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.151 0.849 38 H 0.414 0.586 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.049 0.951 42 H 0.098 0.902 43 H 0.022 0.978 44 H 0.055 0.945 45 H 0.246 0.754 46 H 0.038 0.962 47 H -0.003 1.003 48 H 0.094 0.906 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.569 12.400 -16.806 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.097 4.097 3 C -0.189 4.189 4 C -0.034 4.034 5 O -0.322 6.322 6 C 0.027 3.973 7 H 0.072 0.928 8 C -0.164 4.164 9 C 0.286 3.714 10 O -0.465 6.465 11 N -0.365 5.365 12 C 0.025 3.975 13 H 0.063 0.937 14 C -0.143 4.143 15 C -0.161 4.161 16 C 0.010 3.990 17 N -0.335 5.335 18 C -0.396 4.396 19 H 0.087 0.913 20 C -0.246 4.246 21 N -0.576 5.576 22 Si 0.788 3.212 23 H -0.226 1.226 24 H -0.182 1.182 25 H -0.216 1.216 26 C 0.053 3.947 27 C -0.166 4.166 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.132 0.868 37 H 0.169 0.831 38 H 0.251 0.749 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.117 0.883 43 H 0.040 0.960 44 H 0.073 0.927 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.015 0.985 48 H 0.112 0.888 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.784 12.133 -15.899 22.264 hybrid contribution 0.007 0.050 1.460 1.460 sum -9.777 12.182 -14.439 21.272 Atomic orbital electron populations 1.21871 0.92573 1.01777 1.03156 1.21977 0.97114 0.96850 0.93733 1.21811 1.00791 0.93307 1.03014 1.23484 0.94580 0.88422 0.96945 1.89026 1.56694 1.53503 1.32957 1.22966 0.95518 0.96387 0.82477 0.92794 1.21839 1.02027 0.90639 1.01864 1.21448 0.78890 0.87951 0.83110 1.90737 1.50383 1.77263 1.28115 1.45916 1.41469 1.15707 1.33379 1.21420 0.98043 0.82897 0.95162 0.93687 1.21631 1.01694 0.94593 0.96351 1.21978 0.99386 0.96595 0.98168 1.21283 0.95012 0.92320 0.90417 1.44287 1.76776 1.08540 1.03913 1.19515 1.41462 0.95424 0.83206 0.91344 1.25788 0.99659 0.97513 1.01640 1.70167 1.45159 1.08067 1.34175 0.85375 0.77174 0.78389 0.80271 1.22553 1.18183 1.21607 1.20769 0.93310 0.86344 0.94277 1.23337 1.03187 0.92501 0.97567 0.92042 0.90157 0.93512 0.92740 0.90436 0.92061 0.93745 0.90041 0.86831 0.83088 0.74900 0.89399 0.90664 0.93200 0.88330 0.95954 0.92666 0.94510 0.94358 0.98458 0.88791 0.87532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.25 71.98 0.59 -1.45 16 2 C -0.10 -1.72 0.99 -51.13 -0.05 -1.77 16 3 C -0.13 -1.83 8.28 71.98 0.60 -1.23 16 4 C 0.04 1.14 7.03 72.35 0.51 1.65 16 5 O -0.40 -14.45 10.75 -141.21 -1.52 -15.96 16 6 C 0.08 2.25 2.77 31.28 0.09 2.34 16 7 H 0.05 1.63 7.96 -2.39 -0.02 1.61 16 8 C -0.12 -2.94 5.47 29.85 0.16 -2.78 16 9 C 0.50 18.21 7.72 87.66 0.68 18.88 16 10 O -0.59 -29.16 15.28 4.76 0.07 -29.08 16 11 N -0.71 -23.36 5.08 -442.16 -2.25 -25.61 16 12 C 0.13 5.34 2.60 45.07 0.12 5.46 16 13 H 0.04 2.16 7.58 -2.39 -0.02 2.14 16 14 C -0.10 -3.15 5.35 30.62 0.16 -2.99 16 15 C -0.12 -3.91 6.10 30.82 0.19 -3.72 16 16 C 0.13 5.64 6.54 86.51 0.57 6.21 16 17 N -0.61 -33.00 2.99 -698.25 -2.09 -35.09 16 18 C -0.27 -15.92 9.58 84.03 0.81 -15.11 16 19 H 0.07 3.96 7.89 -2.91 -0.02 3.93 16 20 C -0.05 -3.10 4.91 84.86 0.42 -2.68 16 21 N -0.93 -60.63 11.19 21.65 0.24 -60.39 16 22 Si 0.96 49.85 29.59 68.60 2.03 51.88 16 23 H -0.30 -15.93 7.11 99.48 0.71 -15.22 16 24 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 26 C 0.18 9.53 4.88 86.36 0.42 9.95 16 27 C -0.13 -2.13 5.71 31.96 0.18 -1.95 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.04 1.25 7.69 -2.38 -0.02 1.23 16 35 H 0.08 2.08 7.70 -2.39 -0.02 2.06 16 36 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.15 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.41 9.54 8.60 -92.71 -0.80 8.75 16 39 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 40 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 43 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.05 2.27 7.93 -2.39 -0.02 2.25 16 45 H 0.25 15.70 8.31 -92.71 -0.77 14.93 16 46 H 0.04 2.46 6.04 -2.39 -0.01 2.45 16 47 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 48 H 0.09 1.32 7.79 -2.39 -0.02 1.30 16 49 H 0.11 1.23 7.86 -2.39 -0.02 1.21 16 Total: -1.00 -86.47 381.73 2.04 -84.43 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.11 Total: 19.01 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 5.44 Total: 10.81 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -4.09 Total: -121.08 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -1.45 Total: -45.05 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 2.03 Total: 51.88 kcal Total: -86.47 2.04 -84.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007914708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.424 kcal (2) G-P(sol) polarization free energy of solvation -86.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds