Wall clock time and date at job start Fri Apr 10 2020 22:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.54266 * 2 1 4 4 O 1.21278 * 119.99866 * 239.82054 * 3 2 1 5 5 N 1.34781 * 120.00101 * 59.81848 * 3 2 1 6 6 C 1.46499 * 119.99874 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.46840 * 85.00543 * 6 5 3 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.46963 * 299.99499 * 8 7 6 10 10 N 1.46506 * 109.47426 * 300.00493 * 9 8 7 11 11 C 1.36937 * 119.99576 * 275.00360 * 10 9 8 12 12 H 1.07998 * 120.00454 * 359.97438 * 11 10 9 13 13 C 1.38815 * 119.99899 * 179.97438 * 11 10 9 14 14 N 1.31627 * 119.99778 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00056 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47021 * 59.99884 * 15 13 11 17 17 H 1.48499 * 109.47086 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47289 * 299.99690 * 15 13 11 19 19 C 1.52997 * 109.47092 * 60.00194 * 9 8 7 20 20 C 1.53002 * 109.46799 * 205.00309 * 6 5 3 21 21 C 1.53181 * 109.61569 * 120.21908 * 2 1 3 22 22 C 1.53093 * 109.16156 * 176.89368 * 21 2 1 23 23 O 1.42906 * 109.41296 * 302.39111 * 22 21 2 24 24 C 1.42901 * 114.09742 * 61.16352 * 23 22 21 25 25 C 1.53097 * 109.41462 * 298.83872 * 24 23 22 26 26 H 1.09007 * 109.47120 * 60.00202 * 1 2 3 27 27 H 1.09000 * 109.47415 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47608 * 300.00675 * 1 2 3 29 29 H 0.97002 * 119.99716 * 0.02562 * 5 3 2 30 30 H 1.09002 * 109.47391 * 325.00213 * 6 5 3 31 31 H 1.09001 * 109.47194 * 299.99493 * 7 6 5 32 32 H 1.08992 * 109.47399 * 59.99666 * 7 6 5 33 33 H 1.09000 * 109.47437 * 180.02562 * 8 7 6 34 34 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 35 35 H 1.09000 * 109.47312 * 180.02562 * 9 8 7 36 36 H 0.96991 * 120.00147 * 94.99567 * 10 9 8 37 37 H 0.97000 * 119.99679 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.47375 * 180.02562 * 19 9 8 39 39 H 1.09002 * 109.47497 * 59.99850 * 19 9 8 40 40 H 1.09002 * 109.47075 * 299.99543 * 20 6 5 41 41 H 1.08996 * 109.47407 * 60.00500 * 20 6 5 42 42 H 1.09000 * 109.51877 * 296.79924 * 21 2 1 43 43 H 1.09004 * 109.52033 * 56.98530 * 21 2 1 44 44 H 1.08997 * 109.47365 * 182.41158 * 22 21 2 45 45 H 1.09001 * 109.49162 * 62.38096 * 22 21 2 46 46 H 1.09001 * 109.48079 * 178.85949 * 24 23 22 47 47 H 1.08994 * 109.49199 * 58.82394 * 24 23 22 48 48 H 1.09005 * 109.51725 * 297.70587 * 25 24 23 49 49 H 1.08995 * 109.52301 * 177.51796 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0341 1.4202 0.0000 4 8 2.7345 1.8150 -0.9080 5 7 1.7065 2.2516 1.0090 6 6 2.1970 3.6320 1.0092 7 6 1.2570 4.5074 0.1780 8 6 1.7696 5.9490 0.1777 9 6 1.8178 6.4734 1.6143 10 7 0.4729 6.4334 2.1941 11 6 -0.3947 7.4716 1.9834 12 1 -0.0875 8.3202 1.3901 13 6 -1.6691 7.4335 2.5324 14 7 -2.0437 6.3991 3.2550 15 14 -2.8524 8.8502 2.2455 16 1 -3.0938 9.0061 0.7886 17 1 -4.1383 8.5679 2.9324 18 1 -2.2659 10.1024 2.7869 19 6 2.7577 5.5980 2.4455 20 6 2.2447 4.1560 2.4459 21 6 2.0442 -0.7262 1.2468 22 6 3.5731 -0.7882 1.1975 23 8 3.9833 -1.4476 -0.0021 24 6 3.5714 -0.7876 -1.2008 25 6 2.0424 -0.7256 -1.2479 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.1466 1.9357 1.7353 30 1 3.1977 3.6622 0.5781 31 1 1.2230 4.1341 -0.8455 32 1 0.2564 4.4773 0.6091 33 1 1.0997 6.5728 -0.4140 34 1 2.7702 5.9788 -0.2536 35 1 2.1825 7.5005 1.6141 36 1 0.1971 5.6714 2.7272 37 1 -2.9343 6.3724 3.6383 38 1 2.7917 5.9713 3.4690 39 1 3.7583 5.6277 2.0142 40 1 1.2440 4.1260 2.8770 41 1 2.9144 3.5324 3.0381 42 1 1.7302 -0.1848 2.1392 43 1 1.6392 -1.7379 1.2721 44 1 3.9424 -1.3415 2.0610 45 1 3.9788 0.2234 1.2133 46 1 3.9395 -1.3405 -2.0650 47 1 3.9768 0.2240 -1.2167 48 1 1.6374 -1.7373 -1.2730 49 1 1.7271 -0.1838 -2.1395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026576607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:19 Heat of formation + Delta-G solvation = -95.647997 kcal Electronic energy + Delta-G solvation = -27646.975029 eV Core-core repulsion = 23994.084973 eV Total energy + Delta-G solvation = -3652.890056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.99896 -38.89192 -37.66695 -35.01535 -34.66631 -32.80730 -31.26385 -30.31392 -30.21880 -28.63416 -27.61932 -24.07604 -23.82198 -23.49518 -22.44753 -22.17894 -21.02656 -19.57186 -18.39419 -17.24348 -16.85443 -16.28535 -16.13698 -15.91624 -15.19531 -14.91093 -14.60448 -14.54882 -14.18194 -14.05557 -13.78059 -13.49018 -12.95052 -12.83023 -12.66967 -12.42897 -12.27443 -12.17229 -12.08814 -11.91440 -11.76617 -11.66633 -11.46580 -10.94049 -10.83047 -10.73737 -10.70073 -10.61631 -10.32601 -10.20223 -10.05720 -9.78068 -9.72691 -9.52699 -9.31091 -8.89585 -8.74477 -6.94565 -5.78048 -3.05022 2.66615 3.22796 3.42858 3.47713 3.48194 3.75612 4.30669 4.40925 4.55768 4.59219 4.80306 4.85658 5.05977 5.10532 5.21099 5.28121 5.34292 5.40941 5.42870 5.45386 5.49631 5.56369 5.59934 5.69596 5.70596 5.77313 5.81619 5.83529 5.87759 5.95246 5.97006 6.00366 6.04565 6.09540 6.21575 6.32883 6.49152 6.62977 6.67119 6.77665 6.90210 7.03111 7.06793 7.08817 7.61237 7.70012 8.29738 8.41792 9.53018 10.11464 10.46486 11.44827 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.022189 B = 0.003338 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.555800 B = 8386.642198 C = 8790.771827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.084 4.084 3 C 0.522 3.478 4 O -0.540 6.540 5 N -0.719 5.719 6 C 0.149 3.851 7 C -0.117 4.117 8 C -0.130 4.130 9 C 0.171 3.829 10 N -0.720 5.720 11 C -0.235 4.235 12 H 0.069 0.931 13 C -0.014 4.014 14 N -0.935 5.935 15 Si 0.904 3.096 16 H -0.287 1.287 17 H -0.292 1.292 18 H -0.287 1.287 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.143 4.143 22 C 0.059 3.941 23 O -0.385 6.385 24 C 0.048 3.952 25 C -0.127 4.127 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.398 0.602 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.048 0.952 36 H 0.383 0.617 37 H 0.254 0.746 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.050 0.950 46 H 0.089 0.911 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.415 -15.641 -3.988 18.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.087 4.087 3 C 0.308 3.692 4 O -0.418 6.418 5 N -0.368 5.368 6 C 0.045 3.955 7 C -0.155 4.155 8 C -0.171 4.171 9 C 0.061 3.939 10 N -0.362 5.362 11 C -0.366 4.366 12 H 0.087 0.913 13 C -0.210 4.210 14 N -0.584 5.584 15 Si 0.736 3.264 16 H -0.214 1.214 17 H -0.218 1.218 18 H -0.214 1.214 19 C -0.156 4.156 20 C -0.161 4.161 21 C -0.181 4.181 22 C -0.018 4.018 23 O -0.304 6.304 24 C -0.028 4.028 25 C -0.165 4.165 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.232 0.768 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.218 0.782 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.113 0.887 45 H 0.068 0.932 46 H 0.108 0.892 47 H 0.095 0.905 48 H 0.093 0.907 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.932 -15.351 -4.664 18.869 hybrid contribution -1.487 0.667 0.350 1.667 sum 8.445 -14.684 -4.314 17.480 Atomic orbital electron populations 1.21847 0.91922 1.02896 1.03130 1.20902 0.97590 0.92550 0.97668 1.20401 0.79951 0.86983 0.81859 1.90631 1.38081 1.77397 1.35692 1.46187 1.52960 1.12564 1.25117 1.21063 0.98282 0.79415 0.96707 1.21722 1.00199 0.94888 0.98719 1.22100 0.99156 0.95647 1.00195 1.20253 0.86751 0.96282 0.90575 1.42452 1.09478 1.23143 1.61157 1.19222 0.93426 0.97849 1.26143 0.91340 1.24687 0.97654 0.97937 1.00681 1.69637 1.19670 1.30060 1.39059 0.86305 0.80608 0.81975 0.77534 1.21389 1.21789 1.21361 1.21732 0.98546 0.94258 1.01092 1.21747 1.02533 0.96940 0.94864 1.22286 0.97251 1.01779 0.96778 1.22560 0.93314 0.97856 0.88087 1.87887 1.77195 1.51470 1.13865 1.22850 0.93689 0.99299 0.86946 1.22019 0.97183 1.00312 0.97026 0.91738 0.91369 0.91637 0.76760 0.90245 0.93255 0.90442 0.91978 0.93739 0.93387 0.78228 0.93605 0.91498 0.92354 0.90491 0.92465 0.90298 0.89842 0.88691 0.93217 0.89238 0.90464 0.90711 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.39 37.16 0.31 -0.99 16 2 C -0.08 -0.87 0.63 -155.48 -0.10 -0.97 16 3 C 0.52 6.96 5.11 -10.98 -0.06 6.90 16 4 O -0.54 -8.91 13.50 5.56 0.08 -8.84 16 5 N -0.72 -9.22 4.85 -53.80 -0.26 -9.48 16 6 C 0.15 2.21 2.45 -67.93 -0.17 2.04 16 7 C -0.12 -2.04 5.34 -26.73 -0.14 -2.18 16 8 C -0.13 -2.34 5.61 -26.73 -0.15 -2.49 16 9 C 0.17 3.27 3.10 -67.93 -0.21 3.06 16 10 N -0.72 -17.02 4.28 -53.42 -0.23 -17.25 16 11 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 12 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 13 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 14 N -0.94 -27.27 13.06 55.49 0.72 -26.55 16 15 Si 0.90 22.10 29.55 -169.99 -5.02 17.08 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 C -0.12 -1.84 5.61 -26.70 -0.15 -1.99 16 20 C -0.12 -1.78 5.22 -26.70 -0.14 -1.92 16 21 C -0.14 -1.26 4.86 -26.59 -0.13 -1.39 16 22 C 0.06 0.59 6.62 37.21 0.25 0.84 16 23 O -0.39 -4.62 10.77 -35.23 -0.38 -5.00 16 24 C 0.05 0.55 6.55 37.21 0.24 0.80 16 25 C -0.13 -1.33 4.56 -26.59 -0.12 -1.45 16 26 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.59 7.56 -51.93 -0.39 0.20 16 29 H 0.40 4.41 7.43 -40.82 -0.30 4.10 16 30 H 0.08 1.25 7.58 -51.93 -0.39 0.86 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.56 7.61 -51.93 -0.39 1.16 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 36 H 0.38 9.46 6.06 -40.82 -0.25 9.22 16 37 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 1.26 6.51 -51.93 -0.34 0.92 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.60 7.52 -51.93 -0.39 0.21 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.56 7.38 -51.93 -0.38 0.18 16 46 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.08 1.05 5.80 -51.93 -0.30 0.75 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.08 0.88 8.03 -51.93 -0.42 0.47 16 LS Contribution 370.21 15.07 5.58 5.58 Total: -1.00 -30.70 370.21 -8.92 -39.62 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -8.60 Total: 11.52 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -0.81 Total: -6.69 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.24 Total: -53.28 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.30 Total: -13.84 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.70 -8.92 -39.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026576607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.029 kcal (2) G-P(sol) polarization free energy of solvation -30.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds