Wall clock time and date at job start Fri Apr 10 2020 22:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.54266 * 2 1 4 4 O 1.21278 * 119.99866 * 239.82054 * 3 2 1 5 5 N 1.34781 * 120.00101 * 59.81848 * 3 2 1 6 6 C 1.46499 * 119.99874 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.46840 * 85.00543 * 6 5 3 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.46963 * 299.99499 * 8 7 6 10 10 N 1.46506 * 109.47426 * 300.00493 * 9 8 7 11 11 C 1.36937 * 119.99576 * 275.00360 * 10 9 8 12 12 H 1.07998 * 120.00454 * 359.97438 * 11 10 9 13 13 C 1.38815 * 119.99899 * 179.97438 * 11 10 9 14 14 N 1.31627 * 119.99778 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00056 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47021 * 59.99884 * 15 13 11 17 17 H 1.48499 * 109.47086 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47289 * 299.99690 * 15 13 11 19 19 C 1.52997 * 109.47092 * 60.00194 * 9 8 7 20 20 C 1.53002 * 109.46799 * 205.00309 * 6 5 3 21 21 C 1.53181 * 109.61569 * 120.21908 * 2 1 3 22 22 C 1.53093 * 109.16156 * 176.89368 * 21 2 1 23 23 O 1.42906 * 109.41296 * 302.39111 * 22 21 2 24 24 C 1.42901 * 114.09742 * 61.16352 * 23 22 21 25 25 C 1.53097 * 109.41462 * 298.83872 * 24 23 22 26 26 H 1.09007 * 109.47120 * 60.00202 * 1 2 3 27 27 H 1.09000 * 109.47415 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47608 * 300.00675 * 1 2 3 29 29 H 0.97002 * 119.99716 * 0.02562 * 5 3 2 30 30 H 1.09002 * 109.47391 * 325.00213 * 6 5 3 31 31 H 1.09001 * 109.47194 * 299.99493 * 7 6 5 32 32 H 1.08992 * 109.47399 * 59.99666 * 7 6 5 33 33 H 1.09000 * 109.47437 * 180.02562 * 8 7 6 34 34 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 35 35 H 1.09000 * 109.47312 * 180.02562 * 9 8 7 36 36 H 0.96991 * 120.00147 * 94.99567 * 10 9 8 37 37 H 0.97000 * 119.99679 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.47375 * 180.02562 * 19 9 8 39 39 H 1.09002 * 109.47497 * 59.99850 * 19 9 8 40 40 H 1.09002 * 109.47075 * 299.99543 * 20 6 5 41 41 H 1.08996 * 109.47407 * 60.00500 * 20 6 5 42 42 H 1.09000 * 109.51877 * 296.79924 * 21 2 1 43 43 H 1.09004 * 109.52033 * 56.98530 * 21 2 1 44 44 H 1.08997 * 109.47365 * 182.41158 * 22 21 2 45 45 H 1.09001 * 109.49162 * 62.38096 * 22 21 2 46 46 H 1.09001 * 109.48079 * 178.85949 * 24 23 22 47 47 H 1.08994 * 109.49199 * 58.82394 * 24 23 22 48 48 H 1.09005 * 109.51725 * 297.70587 * 25 24 23 49 49 H 1.08995 * 109.52301 * 177.51796 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0341 1.4202 0.0000 4 8 2.7345 1.8150 -0.9080 5 7 1.7065 2.2516 1.0090 6 6 2.1970 3.6320 1.0092 7 6 1.2570 4.5074 0.1780 8 6 1.7696 5.9490 0.1777 9 6 1.8178 6.4734 1.6143 10 7 0.4729 6.4334 2.1941 11 6 -0.3947 7.4716 1.9834 12 1 -0.0875 8.3202 1.3901 13 6 -1.6691 7.4335 2.5324 14 7 -2.0437 6.3991 3.2550 15 14 -2.8524 8.8502 2.2455 16 1 -3.0938 9.0061 0.7886 17 1 -4.1383 8.5679 2.9324 18 1 -2.2659 10.1024 2.7869 19 6 2.7577 5.5980 2.4455 20 6 2.2447 4.1560 2.4459 21 6 2.0442 -0.7262 1.2468 22 6 3.5731 -0.7882 1.1975 23 8 3.9833 -1.4476 -0.0021 24 6 3.5714 -0.7876 -1.2008 25 6 2.0424 -0.7256 -1.2479 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.1466 1.9357 1.7353 30 1 3.1977 3.6622 0.5781 31 1 1.2230 4.1341 -0.8455 32 1 0.2564 4.4773 0.6091 33 1 1.0997 6.5728 -0.4140 34 1 2.7702 5.9788 -0.2536 35 1 2.1825 7.5005 1.6141 36 1 0.1971 5.6714 2.7272 37 1 -2.9343 6.3724 3.6383 38 1 2.7917 5.9713 3.4690 39 1 3.7583 5.6277 2.0142 40 1 1.2440 4.1260 2.8770 41 1 2.9144 3.5324 3.0381 42 1 1.7302 -0.1848 2.1392 43 1 1.6392 -1.7379 1.2721 44 1 3.9424 -1.3415 2.0610 45 1 3.9788 0.2234 1.2133 46 1 3.9395 -1.3405 -2.0650 47 1 3.9768 0.2240 -1.2167 48 1 1.6374 -1.7373 -1.2730 49 1 1.7271 -0.1838 -2.1395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026576607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:19 Heat of formation + Delta-G solvation = -115.340719 kcal Electronic energy + Delta-G solvation = -27647.828969 eV Core-core repulsion = 23994.084973 eV Total energy + Delta-G solvation = -3653.743997 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.97672 -40.10822 -38.82920 -36.16174 -35.88704 -34.49337 -32.27685 -31.78296 -31.64985 -29.57536 -29.02383 -25.68870 -24.84369 -24.60843 -23.61746 -23.37874 -22.22501 -20.72057 -19.76429 -19.21904 -17.81808 -17.39683 -16.97734 -16.88183 -16.56127 -16.20852 -16.06004 -15.54432 -15.44160 -15.34712 -15.09857 -14.94553 -14.49550 -13.80220 -13.62650 -13.59064 -13.33656 -13.26063 -13.17722 -13.05241 -12.94962 -12.92587 -12.81159 -12.64463 -12.24641 -12.24396 -12.08339 -11.90572 -11.68132 -11.49752 -11.44128 -11.22475 -11.20182 -10.84452 -10.65767 -10.31895 -9.96017 -8.92591 -7.90494 -5.15554 1.47764 1.49010 1.54805 1.62219 2.18514 2.58623 2.95136 3.42473 3.48932 3.57429 3.76174 3.79175 3.91463 3.99342 4.03186 4.10219 4.15594 4.29368 4.38557 4.43033 4.50378 4.60854 4.63066 4.64065 4.65846 4.67020 4.68583 4.77816 4.82347 4.83045 4.94309 4.99798 5.06721 5.07765 5.12355 5.18746 5.21703 5.28334 5.30782 5.31873 5.48702 5.56610 5.61981 5.63332 6.23457 6.33201 6.57175 7.25519 7.40238 8.18362 8.42864 9.32537 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.022189 B = 0.003338 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.555800 B = 8386.642198 C = 8790.771827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.080 4.080 3 C 0.519 3.481 4 O -0.575 6.575 5 N -0.713 5.713 6 C 0.160 3.840 7 C -0.106 4.106 8 C -0.124 4.124 9 C 0.165 3.835 10 N -0.727 5.727 11 C -0.235 4.235 12 H 0.069 0.931 13 C -0.071 4.071 14 N -0.965 5.965 15 Si 0.963 3.037 16 H -0.284 1.284 17 H -0.296 1.296 18 H -0.281 1.281 19 C -0.111 4.111 20 C -0.113 4.113 21 C -0.138 4.138 22 C 0.053 3.947 23 O -0.397 6.397 24 C 0.049 3.951 25 C -0.126 4.126 26 H 0.049 0.951 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.408 0.592 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.068 0.932 35 H 0.042 0.958 36 H 0.376 0.624 37 H 0.249 0.751 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.116 0.884 45 H 0.032 0.968 46 H 0.102 0.898 47 H 0.051 0.949 48 H 0.095 0.905 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.084 -16.897 -3.487 19.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.083 4.083 3 C 0.306 3.694 4 O -0.454 6.454 5 N -0.363 5.363 6 C 0.055 3.945 7 C -0.145 4.145 8 C -0.165 4.165 9 C 0.056 3.944 10 N -0.368 5.368 11 C -0.368 4.368 12 H 0.087 0.913 13 C -0.264 4.264 14 N -0.616 5.616 15 Si 0.793 3.207 16 H -0.211 1.211 17 H -0.223 1.223 18 H -0.207 1.207 19 C -0.150 4.150 20 C -0.151 4.151 21 C -0.175 4.175 22 C -0.023 4.023 23 O -0.316 6.316 24 C -0.027 4.027 25 C -0.164 4.164 26 H 0.068 0.932 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.245 0.755 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.210 0.790 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.120 0.880 44 H 0.134 0.866 45 H 0.051 0.949 46 H 0.120 0.880 47 H 0.069 0.931 48 H 0.113 0.887 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.626 -16.603 -4.168 20.148 hybrid contribution -1.608 1.072 0.129 1.937 sum 9.018 -15.531 -4.038 18.408 Atomic orbital electron populations 1.21858 0.90903 1.04265 1.02575 1.20932 0.98234 0.90464 0.98701 1.21006 0.79146 0.88143 0.81062 1.90621 1.39606 1.78274 1.36943 1.46092 1.52944 1.11716 1.25531 1.20812 0.97228 0.80031 0.96398 1.21579 0.99260 0.95286 0.98397 1.21994 0.99895 0.95410 0.99176 1.20474 0.85402 0.97035 0.91453 1.42581 1.10848 1.22143 1.61255 1.19556 0.93977 0.98345 1.24882 0.91329 1.25368 0.99301 1.00251 1.01467 1.69772 1.19646 1.31704 1.40504 0.85370 0.78464 0.79607 0.77278 1.21096 1.22255 1.20690 1.21668 0.98843 0.94007 1.00454 1.21657 1.02055 0.96771 0.94650 1.22301 0.96205 1.02726 0.96285 1.22722 0.94287 0.97222 0.88097 1.87871 1.77635 1.51701 1.14411 1.22810 0.94377 0.98065 0.87492 1.22018 0.96489 1.01220 0.96626 0.93164 0.89043 0.91373 0.75545 0.90445 0.94290 0.93488 0.94437 0.91335 0.93973 0.78995 0.94237 0.91585 0.89603 0.92469 0.89477 0.88801 0.88016 0.86590 0.94933 0.88005 0.93074 0.88679 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.39 71.98 0.60 -1.71 16 2 C -0.08 -1.53 0.63 -52.81 -0.03 -1.56 16 3 C 0.52 13.47 5.11 87.66 0.45 13.91 16 4 O -0.57 -19.02 13.50 -3.02 -0.04 -19.06 16 5 N -0.71 -17.57 4.85 -442.52 -2.15 -19.72 16 6 C 0.16 4.58 2.45 44.99 0.11 4.69 16 7 C -0.11 -3.74 5.34 30.59 0.16 -3.58 16 8 C -0.12 -4.45 5.61 30.60 0.17 -4.28 16 9 C 0.16 6.22 3.10 44.99 0.14 6.35 16 10 N -0.73 -34.67 4.28 -322.93 -1.38 -36.05 16 11 C -0.24 -12.77 9.93 84.03 0.83 -11.94 16 12 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 13 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 14 N -0.97 -57.07 13.06 21.65 0.28 -56.79 16 15 Si 0.96 45.81 29.55 68.60 2.03 47.84 16 16 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 17 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 18 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 19 C -0.11 -3.27 5.61 30.61 0.17 -3.10 16 20 C -0.11 -3.09 5.22 30.61 0.16 -2.93 16 21 C -0.14 -2.04 4.86 30.69 0.15 -1.89 16 22 C 0.05 0.96 6.62 72.01 0.48 1.44 16 23 O -0.40 -8.90 10.77 -148.98 -1.60 -10.50 16 24 C 0.05 1.08 6.55 72.01 0.47 1.55 16 25 C -0.13 -2.45 4.56 30.68 0.14 -2.31 16 26 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.07 1.10 7.56 -2.39 -0.02 1.08 16 29 H 0.41 8.43 7.43 -92.71 -0.69 7.74 16 30 H 0.08 2.32 7.58 -2.39 -0.02 2.30 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 1.94 7.61 -2.39 -0.02 1.92 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.04 1.64 8.08 -2.39 -0.02 1.62 16 36 H 0.38 18.87 6.06 -92.71 -0.56 18.31 16 37 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 38 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.06 1.83 6.51 -2.39 -0.02 1.81 16 41 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.09 1.13 7.52 -2.39 -0.02 1.11 16 43 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.03 0.70 7.38 -2.39 -0.02 0.68 16 46 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.05 1.41 5.80 -2.39 -0.01 1.39 16 48 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 49 H 0.07 1.50 8.03 -2.39 -0.02 1.48 16 Total: -1.00 -66.96 370.21 1.30 -65.66 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: -0.31 Total: 37.51 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 4.47 Total: -8.89 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -3.25 Total: -112.57 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -1.64 Total: -29.56 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -66.96 1.30 -65.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026576607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.678 kcal (2) G-P(sol) polarization free energy of solvation -66.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds