Wall clock time and date at job start Fri Apr 10 2020 22:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46653 * 2 1 4 4 C 1.53001 * 109.47127 * 120.00101 * 2 1 3 5 5 C 1.53000 * 109.46834 * 173.85923 * 4 2 1 6 6 H 1.08997 * 109.56797 * 54.51767 * 5 4 2 7 7 C 1.50442 * 109.56480 * 174.87722 * 5 4 2 8 8 O 1.21282 * 118.48492 * 287.08557 * 7 5 4 9 9 N 1.33328 * 123.00427 * 107.07264 * 7 5 4 10 10 C 1.45647 * 124.62904 * 4.40489 * 9 7 5 11 11 C 1.52985 * 110.73984 * 338.02432 * 10 9 7 12 12 N 1.47054 * 109.56734 * 294.27888 * 5 4 2 13 13 C 1.34780 * 121.34930 * 102.93685 * 12 5 4 14 14 O 1.21277 * 120.00301 * 359.97438 * 13 12 5 15 15 C 1.50703 * 119.99578 * 179.97438 * 13 12 5 16 16 C 1.52996 * 109.46863 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47474 * 179.97438 * 16 15 13 18 18 C 1.52996 * 109.47474 * 180.02562 * 17 16 15 19 19 C 1.50703 * 109.46863 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00150 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99860 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00231 * 179.97438 * 21 19 18 23 23 Si 1.86808 * 120.00029 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46655 * 90.00256 * 23 21 19 25 25 H 1.48496 * 109.47123 * 210.00175 * 23 21 19 26 26 H 1.48496 * 109.46870 * 330.00328 * 23 21 19 27 27 H 1.09004 * 109.47094 * 295.75146 * 1 2 3 28 28 H 1.08996 * 109.47209 * 55.75492 * 1 2 3 29 29 H 1.09004 * 109.46903 * 175.76169 * 1 2 3 30 30 H 1.08993 * 109.46984 * 240.00395 * 2 1 3 31 31 H 1.09001 * 109.46913 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47538 * 299.99821 * 3 2 1 33 33 H 1.09001 * 109.47069 * 60.00821 * 3 2 1 34 34 H 1.08994 * 109.46965 * 53.85769 * 4 2 1 35 35 H 1.09004 * 109.47031 * 293.85617 * 4 2 1 36 36 H 0.97000 * 117.66611 * 184.34810 * 9 7 5 37 37 H 1.09007 * 109.21248 * 217.71309 * 10 9 7 38 38 H 1.09000 * 109.21993 * 98.33852 * 10 9 7 39 39 H 1.09000 * 109.72090 * 166.42541 * 11 10 9 40 40 H 1.08999 * 109.72077 * 287.03259 * 11 10 9 41 41 H 1.08999 * 109.46993 * 300.00101 * 15 13 12 42 42 H 1.08994 * 109.47052 * 60.00381 * 15 13 12 43 43 H 1.09004 * 109.47583 * 300.00138 * 16 15 13 44 44 H 1.09000 * 109.47372 * 59.99942 * 16 15 13 45 45 H 1.09004 * 109.47092 * 300.00762 * 17 16 15 46 46 H 1.09000 * 109.46604 * 59.99795 * 17 16 15 47 47 H 1.08999 * 109.47283 * 300.00105 * 18 17 16 48 48 H 1.08994 * 109.47091 * 60.00586 * 18 17 16 49 49 H 0.96997 * 120.00419 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5623 -0.8563 1.1744 6 1 4.0087 0.1260 1.0199 7 6 4.0789 -1.4514 2.4559 8 8 4.0872 -0.7603 3.4525 9 7 4.5276 -2.7036 2.5460 10 6 4.6630 -3.6174 1.4199 11 6 3.7557 -3.1911 0.2642 12 7 3.9238 -1.7427 0.0581 13 6 4.3904 -1.2494 -1.1062 14 8 4.5191 -0.0521 -1.2494 15 6 4.7523 -2.1860 -2.2300 16 6 5.2520 -1.3759 -3.4279 17 6 5.6200 -2.3266 -4.5688 18 6 6.1203 -1.5166 -5.7664 19 6 6.4822 -2.4532 -6.8903 20 1 6.3673 -3.5195 -6.7629 21 6 6.9610 -1.9488 -8.0808 22 7 7.2773 -2.7660 -9.0615 23 14 7.1605 -0.1045 -8.3009 24 1 8.5219 0.3012 -7.8682 25 1 6.9706 0.2468 -9.7312 26 1 6.1477 0.6046 -7.4783 27 1 -0.3633 0.4465 0.9256 28 1 -0.3633 0.5783 -0.8495 29 1 -0.3633 -1.0249 -0.0760 30 1 1.8934 -0.5137 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.5898 -1.7122 1.3059 35 1 1.7693 -0.1479 2.1358 36 1 4.7826 -3.0286 3.4237 37 1 4.3890 -4.6230 1.7391 38 1 5.6990 -3.6184 1.0812 39 1 4.0382 -3.7268 -0.6420 40 1 2.7171 -3.4099 0.5120 41 1 5.5374 -2.8653 -1.8983 42 1 3.8733 -2.7610 -2.5211 43 1 4.4672 -0.6962 -3.7598 44 1 6.1311 -0.8011 -3.1366 45 1 6.4050 -3.0061 -4.2366 46 1 4.7411 -2.9017 -4.8602 47 1 5.3357 -0.8370 -6.0987 48 1 6.9993 -0.9420 -5.4747 49 1 7.6138 -2.4111 -9.8991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588759908.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:05 Heat of formation + Delta-G solvation = -99.708612 kcal Electronic energy + Delta-G solvation = -26676.793418 eV Core-core repulsion = 23023.727280 eV Total energy + Delta-G solvation = -3653.066137 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.34633 -39.38670 -37.06120 -36.66309 -35.08971 -34.18401 -32.65115 -31.26622 -30.00278 -28.80876 -27.30630 -26.13998 -24.93067 -24.17121 -22.26902 -20.40055 -20.16093 -20.05977 -18.88828 -17.83528 -17.42521 -16.80624 -16.60436 -16.26266 -15.77162 -15.39554 -15.08553 -14.74064 -14.38382 -14.26012 -14.12971 -13.78574 -13.37602 -13.13760 -12.74081 -12.64703 -12.46788 -12.43919 -12.32351 -12.30435 -12.04336 -11.90048 -11.76271 -11.20516 -11.16239 -10.90074 -10.83522 -10.76918 -10.58117 -10.47834 -9.98849 -9.84984 -9.67853 -9.61013 -9.46302 -9.14495 -9.00992 -8.51354 -6.02588 -4.00252 2.15298 2.40922 2.49102 2.82699 3.33978 3.41262 3.46855 3.92478 4.15340 4.38458 4.48332 4.50104 4.54704 4.62255 4.72410 4.75791 4.94415 5.01647 5.11164 5.15817 5.19064 5.26654 5.32389 5.36674 5.45143 5.53013 5.55568 5.67010 5.73516 5.76826 5.91004 5.96448 5.99867 6.09443 6.17732 6.26882 6.29758 6.36318 6.63298 6.76490 6.79729 6.94674 7.04048 7.35089 7.47943 7.71753 7.82571 8.00068 8.55804 9.02158 9.60862 11.10894 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.017637 B = 0.002889 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.198274 B = 9688.805452 C =10496.158341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.151 4.151 4 C -0.114 4.114 5 C 0.129 3.871 6 H 0.132 0.868 7 C 0.519 3.481 8 O -0.545 6.545 9 N -0.718 5.718 10 C 0.094 3.906 11 C 0.089 3.911 12 N -0.621 5.621 13 C 0.520 3.480 14 O -0.521 6.521 15 C -0.137 4.137 16 C -0.106 4.106 17 C -0.102 4.102 18 C -0.015 4.015 19 C -0.520 4.520 20 H 0.071 0.929 21 C 0.065 3.935 22 N -0.906 5.906 23 Si 0.879 3.121 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.264 1.264 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.400 0.600 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.015 0.985 48 H 0.011 0.989 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.792 -2.162 24.757 27.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 C -0.208 4.208 4 C -0.152 4.152 5 C 0.023 3.977 6 H 0.150 0.850 7 C 0.304 3.696 8 O -0.422 6.422 9 N -0.370 5.370 10 C -0.032 4.032 11 C -0.034 4.034 12 N -0.358 5.358 13 C 0.309 3.691 14 O -0.395 6.395 15 C -0.177 4.177 16 C -0.144 4.144 17 C -0.139 4.139 18 C -0.053 4.053 19 C -0.558 4.558 20 H 0.089 0.911 21 C -0.136 4.136 22 N -0.545 5.545 23 Si 0.706 3.294 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.189 1.189 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.236 0.764 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.130 0.870 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.034 0.966 48 H 0.029 0.971 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.699 -1.045 24.751 27.396 hybrid contribution 0.325 0.469 0.077 0.575 sum -11.375 -0.577 24.828 27.315 Atomic orbital electron populations 1.21828 0.95048 1.01517 1.01881 1.21008 0.95480 0.96918 0.97423 1.21907 1.02428 0.95161 1.01283 1.21894 0.91861 1.01557 0.99923 1.21435 0.97276 0.96543 0.82430 0.85048 1.20317 0.76856 0.81597 0.90789 1.90791 1.55677 1.58609 1.37090 1.45358 1.66458 1.13163 1.12014 1.21810 1.01007 0.93394 0.86962 1.22111 1.00392 0.81378 0.99557 1.48416 1.66634 1.06523 1.14233 1.21114 0.75526 0.89924 0.82489 1.90708 1.52058 1.16133 1.80599 1.21822 1.02938 0.98664 0.94287 1.21501 1.01489 0.98187 0.93261 1.21470 1.00181 0.97603 0.94692 1.19569 0.95827 0.96156 0.93707 1.21176 1.42946 0.94773 0.96893 0.91117 1.25039 0.94862 0.97795 0.95875 1.69914 1.45067 1.34747 1.04791 0.86782 0.79077 0.86341 0.77152 1.20311 1.21447 1.18893 0.92749 0.92419 0.92931 0.90989 0.91270 0.92705 0.93122 0.91408 0.89905 0.76443 0.88980 0.90796 0.86986 0.89989 0.88925 0.88836 0.91687 0.91749 0.92889 0.92837 0.96624 0.97078 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16 2 C -0.09 -0.85 2.80 -90.62 -0.25 -1.10 16 3 C -0.15 -1.60 8.92 37.16 0.33 -1.26 16 4 C -0.11 -0.98 4.24 -26.73 -0.11 -1.10 16 5 C 0.13 1.30 2.34 -68.91 -0.16 1.14 16 6 H 0.13 1.63 5.51 -51.93 -0.29 1.34 16 7 C 0.52 5.39 7.10 -11.75 -0.08 5.31 16 8 O -0.55 -7.65 17.80 5.56 0.10 -7.55 16 9 N -0.72 -4.96 5.42 -61.33 -0.33 -5.29 16 10 C 0.09 0.39 7.34 -4.51 -0.03 0.36 16 11 C 0.09 0.45 6.31 -3.63 -0.02 0.42 16 12 N -0.62 -5.50 2.27 -166.55 -0.38 -5.88 16 13 C 0.52 6.13 6.61 -10.98 -0.07 6.05 16 14 O -0.52 -8.06 14.17 5.56 0.08 -7.98 16 15 C -0.14 -1.50 4.07 -27.88 -0.11 -1.61 16 16 C -0.11 -1.65 4.50 -26.73 -0.12 -1.77 16 17 C -0.10 -1.89 5.15 -26.73 -0.14 -2.03 16 18 C -0.02 -0.36 4.04 -27.88 -0.11 -0.48 16 19 C -0.52 -14.83 9.66 -34.44 -0.33 -15.16 16 20 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 21 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 22 N -0.91 -28.08 13.96 55.43 0.77 -27.30 16 23 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.79 6.70 -51.93 -0.35 0.44 16 31 H 0.07 0.86 5.17 -51.93 -0.27 0.59 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.50 7.34 -51.93 -0.38 0.12 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.40 2.30 8.79 -40.82 -0.36 1.95 16 37 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.11 0.40 6.03 -51.93 -0.31 0.09 16 40 H 0.08 0.32 7.39 -51.93 -0.38 -0.06 16 41 H 0.09 0.83 7.88 -51.93 -0.41 0.43 16 42 H 0.09 0.84 7.83 -51.93 -0.41 0.44 16 43 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 44 H 0.06 1.07 8.10 -51.93 -0.42 0.65 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 48 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 49 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 380.89 15.07 5.74 5.74 Total: -1.00 -35.40 380.89 -8.25 -43.65 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -8.58 Total: -2.57 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -0.98 Total: -10.24 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.06 Total: -38.48 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.18 Total: -15.53 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.40 -8.25 -43.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588759908.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.061 kcal (2) G-P(sol) polarization free energy of solvation -35.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds