Wall clock time and date at job start Fri Apr 10 2020 22:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46653 * 2 1 4 4 C 1.53001 * 109.47127 * 120.00101 * 2 1 3 5 5 C 1.53000 * 109.46834 * 173.85923 * 4 2 1 6 6 H 1.08997 * 109.56797 * 54.51767 * 5 4 2 7 7 C 1.50442 * 109.56480 * 174.87722 * 5 4 2 8 8 O 1.21282 * 118.48492 * 287.08557 * 7 5 4 9 9 N 1.33328 * 123.00427 * 107.07264 * 7 5 4 10 10 C 1.45647 * 124.62904 * 4.40489 * 9 7 5 11 11 C 1.52985 * 110.73984 * 338.02432 * 10 9 7 12 12 N 1.47054 * 109.56734 * 294.27888 * 5 4 2 13 13 C 1.34780 * 121.34930 * 102.93685 * 12 5 4 14 14 O 1.21277 * 120.00301 * 359.97438 * 13 12 5 15 15 C 1.50703 * 119.99578 * 179.97438 * 13 12 5 16 16 C 1.52996 * 109.46863 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47474 * 179.97438 * 16 15 13 18 18 C 1.52996 * 109.47474 * 180.02562 * 17 16 15 19 19 C 1.50703 * 109.46863 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00150 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99860 * 180.02562 * 19 18 17 22 22 N 1.31510 * 120.00231 * 179.97438 * 21 19 18 23 23 Si 1.86808 * 120.00029 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46655 * 90.00256 * 23 21 19 25 25 H 1.48496 * 109.47123 * 210.00175 * 23 21 19 26 26 H 1.48496 * 109.46870 * 330.00328 * 23 21 19 27 27 H 1.09004 * 109.47094 * 295.75146 * 1 2 3 28 28 H 1.08996 * 109.47209 * 55.75492 * 1 2 3 29 29 H 1.09004 * 109.46903 * 175.76169 * 1 2 3 30 30 H 1.08993 * 109.46984 * 240.00395 * 2 1 3 31 31 H 1.09001 * 109.46913 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47538 * 299.99821 * 3 2 1 33 33 H 1.09001 * 109.47069 * 60.00821 * 3 2 1 34 34 H 1.08994 * 109.46965 * 53.85769 * 4 2 1 35 35 H 1.09004 * 109.47031 * 293.85617 * 4 2 1 36 36 H 0.97000 * 117.66611 * 184.34810 * 9 7 5 37 37 H 1.09007 * 109.21248 * 217.71309 * 10 9 7 38 38 H 1.09000 * 109.21993 * 98.33852 * 10 9 7 39 39 H 1.09000 * 109.72090 * 166.42541 * 11 10 9 40 40 H 1.08999 * 109.72077 * 287.03259 * 11 10 9 41 41 H 1.08999 * 109.46993 * 300.00101 * 15 13 12 42 42 H 1.08994 * 109.47052 * 60.00381 * 15 13 12 43 43 H 1.09004 * 109.47583 * 300.00138 * 16 15 13 44 44 H 1.09000 * 109.47372 * 59.99942 * 16 15 13 45 45 H 1.09004 * 109.47092 * 300.00762 * 17 16 15 46 46 H 1.09000 * 109.46604 * 59.99795 * 17 16 15 47 47 H 1.08999 * 109.47283 * 300.00105 * 18 17 16 48 48 H 1.08994 * 109.47091 * 60.00586 * 18 17 16 49 49 H 0.96997 * 120.00419 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5623 -0.8563 1.1744 6 1 4.0087 0.1260 1.0199 7 6 4.0789 -1.4514 2.4559 8 8 4.0872 -0.7603 3.4525 9 7 4.5276 -2.7036 2.5460 10 6 4.6630 -3.6174 1.4199 11 6 3.7557 -3.1911 0.2642 12 7 3.9238 -1.7427 0.0581 13 6 4.3904 -1.2494 -1.1062 14 8 4.5191 -0.0521 -1.2494 15 6 4.7523 -2.1860 -2.2300 16 6 5.2520 -1.3759 -3.4279 17 6 5.6200 -2.3266 -4.5688 18 6 6.1203 -1.5166 -5.7664 19 6 6.4822 -2.4532 -6.8903 20 1 6.3673 -3.5195 -6.7629 21 6 6.9610 -1.9488 -8.0808 22 7 7.2773 -2.7660 -9.0615 23 14 7.1605 -0.1045 -8.3009 24 1 8.5219 0.3012 -7.8682 25 1 6.9706 0.2468 -9.7312 26 1 6.1477 0.6046 -7.4783 27 1 -0.3633 0.4465 0.9256 28 1 -0.3633 0.5783 -0.8495 29 1 -0.3633 -1.0249 -0.0760 30 1 1.8934 -0.5137 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.5898 -1.7122 1.3059 35 1 1.7693 -0.1479 2.1358 36 1 4.7826 -3.0286 3.4237 37 1 4.3890 -4.6230 1.7391 38 1 5.6990 -3.6184 1.0812 39 1 4.0382 -3.7268 -0.6420 40 1 2.7171 -3.4099 0.5120 41 1 5.5374 -2.8653 -1.8983 42 1 3.8733 -2.7610 -2.5211 43 1 4.4672 -0.6962 -3.7598 44 1 6.1311 -0.8011 -3.1366 45 1 6.4050 -3.0061 -4.2366 46 1 4.7411 -2.9017 -4.8602 47 1 5.3357 -0.8370 -6.0987 48 1 6.9993 -0.9420 -5.4747 49 1 7.6138 -2.4111 -9.8991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588759908.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:04 Heat of formation + Delta-G solvation = -123.734792 kcal Electronic energy + Delta-G solvation = -26677.835271 eV Core-core repulsion = 23023.727280 eV Total energy + Delta-G solvation = -3654.107991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.09132 -40.26886 -37.90227 -37.31989 -36.60365 -34.90913 -34.57673 -32.34998 -31.23372 -29.52772 -28.07428 -27.59247 -25.82038 -24.71703 -23.77709 -21.76624 -21.15609 -20.96015 -19.51413 -18.86975 -18.57327 -18.14041 -17.47267 -17.10030 -16.61643 -16.38805 -16.14470 -15.86018 -15.60562 -15.22581 -15.11171 -14.72080 -14.59086 -14.18008 -13.90985 -13.72785 -13.58885 -13.45670 -13.31125 -13.13537 -13.01945 -12.84562 -12.75052 -12.57898 -12.27778 -12.05670 -11.97630 -11.74364 -11.68173 -11.59084 -11.44735 -11.31826 -11.29486 -11.23225 -10.74810 -10.69216 -10.19869 -9.73215 -8.28623 -6.31070 1.35084 1.36812 1.37001 1.49084 1.61812 1.72712 2.18104 2.36454 3.07228 3.31634 3.55866 3.76894 3.84998 3.88061 3.99381 4.03720 4.15786 4.19719 4.20429 4.38153 4.43380 4.59020 4.67718 4.69480 4.71480 4.74315 4.76916 4.78694 4.85771 4.89607 4.97777 4.99472 5.04620 5.17361 5.21354 5.28267 5.29489 5.32532 5.40954 5.45019 5.63842 5.69180 5.70893 5.73861 6.13979 6.29335 6.31687 6.77375 7.01697 7.16093 7.33957 8.87896 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.017637 B = 0.002889 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.198274 B = 9688.805452 C =10496.158341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.149 4.149 4 C -0.105 4.105 5 C 0.131 3.869 6 H 0.101 0.899 7 C 0.517 3.483 8 O -0.591 6.591 9 N -0.705 5.705 10 C 0.090 3.910 11 C 0.079 3.921 12 N -0.612 5.612 13 C 0.518 3.482 14 O -0.568 6.568 15 C -0.128 4.128 16 C -0.097 4.097 17 C -0.092 4.092 18 C -0.018 4.018 19 C -0.528 4.528 20 H 0.040 0.960 21 C 0.005 3.995 22 N -0.951 5.951 23 Si 0.944 3.056 24 H -0.269 1.269 25 H -0.283 1.283 26 H -0.253 1.253 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.407 0.593 37 H 0.132 0.868 38 H 0.077 0.923 39 H 0.135 0.865 40 H 0.101 0.899 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.050 0.950 44 H 0.048 0.952 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.012 0.988 48 H 0.010 0.990 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.802 -3.471 26.130 29.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.104 4.104 3 C -0.206 4.206 4 C -0.143 4.143 5 C 0.024 3.976 6 H 0.119 0.881 7 C 0.303 3.697 8 O -0.472 6.472 9 N -0.356 5.356 10 C -0.034 4.034 11 C -0.043 4.043 12 N -0.348 5.348 13 C 0.308 3.692 14 O -0.446 6.446 15 C -0.167 4.167 16 C -0.135 4.135 17 C -0.130 4.130 18 C -0.055 4.055 19 C -0.566 4.566 20 H 0.058 0.942 21 C -0.192 4.192 22 N -0.592 5.592 23 Si 0.768 3.232 24 H -0.194 1.194 25 H -0.208 1.208 26 H -0.177 1.177 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.244 0.756 37 H 0.150 0.850 38 H 0.096 0.904 39 H 0.153 0.847 40 H 0.119 0.881 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.030 0.970 48 H 0.028 0.972 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.714 -2.433 26.145 29.174 hybrid contribution 0.663 0.755 -0.354 1.065 sum -12.051 -1.678 25.791 28.517 Atomic orbital electron populations 1.21794 0.93618 1.02404 1.02060 1.20953 0.96564 0.95715 0.97189 1.21875 1.00957 0.96508 1.01264 1.21823 0.90876 1.02497 0.99142 1.21260 0.97975 0.95546 0.82771 0.88130 1.20328 0.76891 0.82413 0.90081 1.90768 1.57928 1.60107 1.38384 1.45369 1.64517 1.12249 1.13450 1.22105 1.01203 0.94372 0.85745 1.22548 1.01978 0.78705 1.01055 1.48379 1.65302 1.08236 1.12859 1.21250 0.75254 0.89333 0.83349 1.90704 1.54236 1.18098 1.81564 1.21731 1.04880 0.98104 0.92013 1.21281 1.00540 0.97652 0.94077 1.21323 1.00446 0.97525 0.93661 1.19581 0.95744 0.95831 0.94374 1.21559 1.42296 0.94262 0.98448 0.94189 1.25957 0.94759 1.02801 0.95676 1.70050 1.46541 1.37044 1.05549 0.85745 0.79605 0.80389 0.77449 1.19376 1.20848 1.17653 0.92110 0.92836 0.91564 0.92304 0.93536 0.93383 0.92383 0.89220 0.90489 0.75603 0.84994 0.90427 0.84715 0.88050 0.86158 0.86021 0.93146 0.93286 0.92248 0.92186 0.96973 0.97161 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.19 71.98 0.66 -1.36 16 2 C -0.09 -1.55 2.80 -10.79 -0.03 -1.58 16 3 C -0.15 -3.27 8.92 71.98 0.64 -2.63 16 4 C -0.10 -1.69 4.24 30.59 0.13 -1.56 16 5 C 0.13 2.56 2.34 44.06 0.10 2.66 16 6 H 0.10 2.64 5.51 -2.39 -0.01 2.63 16 7 C 0.52 10.28 7.10 87.80 0.62 10.90 16 8 O -0.59 -16.77 17.80 -3.04 -0.05 -16.83 16 9 N -0.71 -7.95 5.42 -467.15 -2.53 -10.48 16 10 C 0.09 0.36 7.34 86.53 0.63 1.00 16 11 C 0.08 0.45 6.31 86.23 0.54 1.00 16 12 N -0.61 -9.57 2.27 -799.23 -1.81 -11.38 16 13 C 0.52 11.46 6.61 87.66 0.58 12.04 16 14 O -0.57 -17.87 14.17 -3.02 -0.04 -17.91 16 15 C -0.13 -2.41 4.07 29.85 0.12 -2.29 16 16 C -0.10 -2.88 4.50 30.59 0.14 -2.75 16 17 C -0.09 -3.28 5.15 30.59 0.16 -3.12 16 18 C -0.02 -0.84 4.04 29.85 0.12 -0.72 16 19 C -0.53 -30.34 9.66 25.60 0.25 -30.10 16 20 H 0.04 2.47 7.99 -2.91 -0.02 2.45 16 21 C 0.00 0.28 5.47 84.66 0.46 0.74 16 22 N -0.95 -59.82 13.96 21.45 0.30 -59.52 16 23 Si 0.94 45.49 27.47 68.60 1.88 47.38 16 24 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 26 H -0.25 -11.59 6.54 99.48 0.65 -10.94 16 27 H 0.06 0.79 8.14 -2.38 -0.02 0.78 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 1.24 6.70 -2.39 -0.02 1.22 16 31 H 0.05 1.24 5.17 -2.39 -0.01 1.23 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 1.05 7.34 -2.39 -0.02 1.03 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.41 3.70 8.79 -92.71 -0.82 2.89 16 37 H 0.13 -0.38 8.14 -2.38 -0.02 -0.40 16 38 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.13 0.22 6.03 -2.39 -0.01 0.21 16 40 H 0.10 0.28 7.39 -2.39 -0.02 0.26 16 41 H 0.12 1.64 7.88 -2.39 -0.02 1.63 16 42 H 0.12 1.66 7.83 -2.39 -0.02 1.64 16 43 H 0.05 1.63 8.10 -2.38 -0.02 1.61 16 44 H 0.05 1.59 8.10 -2.39 -0.02 1.58 16 45 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 46 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.01 0.57 7.20 -2.39 -0.02 0.55 16 48 H 0.01 0.47 7.57 -2.39 -0.02 0.46 16 49 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -80.72 380.89 2.94 -77.79 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 0.06 Total: 8.72 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 5.14 Total: -17.77 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -4.04 Total: -81.38 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -0.10 Total: -34.73 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.38 kcal Total: -80.72 2.94 -77.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588759908.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.948 kcal (2) G-P(sol) polarization free energy of solvation -80.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds