Wall clock time and date at job start Fri Apr 10 2020 22:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47099 * 2 1 4 4 C 1.52996 * 109.47226 * 299.00323 * 3 2 1 5 5 C 1.52999 * 109.47150 * 293.42054 * 4 3 2 6 6 C 1.50703 * 109.46936 * 59.00206 * 3 2 1 7 7 O 1.21281 * 119.99673 * 256.47120 * 6 3 2 8 8 N 1.34774 * 120.00060 * 76.46604 * 6 3 2 9 9 C 1.46959 * 120.59442 * 174.36217 * 8 6 3 10 10 C 1.53368 * 108.63640 * 235.25138 * 9 8 6 11 11 N 1.46968 * 108.63376 * 310.57293 * 10 9 8 12 12 C 1.34778 * 120.59781 * 235.19909 * 11 10 9 13 13 O 1.21278 * 119.99470 * 0.02562 * 12 11 10 14 14 C 1.50694 * 120.00044 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.47006 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47383 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99685 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00400 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99996 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 119.99814 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47336 * 89.99907 * 20 18 16 22 22 H 1.48503 * 109.47113 * 210.00000 * 20 18 16 23 23 H 1.48505 * 109.47055 * 329.99805 * 20 18 16 24 24 C 1.46967 * 118.80768 * 55.47933 * 11 10 9 25 25 C 1.46960 * 120.59408 * 354.38612 * 8 6 3 26 26 H 1.08997 * 109.47530 * 307.20338 * 1 2 3 27 27 H 1.09001 * 109.46987 * 67.20832 * 1 2 3 28 28 H 1.09003 * 109.47059 * 187.20124 * 1 2 3 29 29 H 1.08997 * 109.47484 * 240.00483 * 2 1 3 30 30 H 1.08996 * 109.47150 * 119.99708 * 2 1 3 31 31 H 1.08993 * 109.47389 * 178.99972 * 3 2 1 32 32 H 1.09000 * 109.47357 * 53.41740 * 4 3 2 33 33 H 1.08998 * 109.47402 * 173.41661 * 4 3 2 34 34 H 1.09002 * 109.47254 * 66.21368 * 5 4 3 35 35 H 1.09004 * 109.47445 * 186.21057 * 5 4 3 36 36 H 1.09001 * 109.47045 * 306.21565 * 5 4 3 37 37 H 1.09000 * 109.61575 * 115.50569 * 9 8 6 38 38 H 1.09004 * 109.61300 * 354.99634 * 9 8 6 39 39 H 1.08999 * 109.61466 * 190.83022 * 10 9 8 40 40 H 1.08998 * 109.75722 * 70.40429 * 10 9 8 41 41 H 1.08999 * 109.47192 * 300.00330 * 14 12 11 42 42 H 1.09003 * 109.47175 * 60.00722 * 14 12 11 43 43 H 1.08999 * 109.46926 * 299.99895 * 15 14 12 44 44 H 1.09004 * 109.47466 * 60.00390 * 15 14 12 45 45 H 0.97005 * 119.99799 * 180.02562 * 19 18 16 46 46 H 1.09004 * 109.61233 * 64.26762 * 24 11 10 47 47 H 1.08999 * 109.60732 * 184.77226 * 24 11 10 48 48 H 1.09001 * 109.61064 * 244.49648 * 25 8 6 49 49 H 1.08997 * 109.61295 * 4.83541 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5506 2.1565 -1.2616 5 6 2.2114 1.5299 -2.4910 6 6 1.5175 2.1600 1.2179 7 8 0.5990 2.9449 1.1118 8 7 2.0709 1.9295 2.4250 9 6 1.6567 2.7101 3.5992 10 6 2.9012 3.3510 4.2256 11 7 3.9302 2.3147 4.3912 12 6 4.4844 2.0848 5.5980 13 8 4.1344 2.7355 6.5598 14 6 5.5379 1.0185 5.7526 15 6 5.9966 0.9624 7.2111 16 6 7.0507 -0.1035 7.3657 17 1 7.3619 -0.6833 6.5093 18 6 7.6177 -0.3386 8.6003 19 7 8.5371 -1.2692 8.7351 20 14 7.0787 0.6636 10.0816 21 1 5.9406 -0.0156 10.7513 22 1 8.2113 0.7873 11.0341 23 1 6.6559 2.0160 9.6370 24 6 4.3485 1.5379 3.2158 25 6 3.0998 0.8933 2.5905 26 1 -0.3634 0.6213 0.8185 27 1 -0.3633 0.3981 -0.9474 28 1 -0.3633 -1.0196 0.1288 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.1298 1.4427 0.0179 32 1 0.4681 2.0553 -1.3396 33 1 1.8136 3.2129 -1.2064 34 1 1.8613 0.5043 -2.6086 35 1 1.9497 2.1070 -3.3780 36 1 3.2938 1.5318 -2.3624 37 1 1.1788 2.0528 4.3256 38 1 0.9588 3.4894 3.2928 39 1 2.6460 3.7716 5.1982 40 1 3.2775 4.1393 3.5736 41 1 5.1222 0.0527 5.4654 42 1 6.3886 1.2528 5.1126 43 1 6.4122 1.9282 7.4987 44 1 5.1458 0.7279 7.8509 45 1 8.9357 -1.4348 9.6038 46 1 4.8243 2.1985 2.4910 47 1 5.0492 0.7609 3.5213 48 1 2.7247 0.1065 3.2450 49 1 3.3530 0.4705 1.6183 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589689705.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:07 Heat of formation + Delta-G solvation = -84.527767 kcal Electronic energy + Delta-G solvation = -26695.000424 eV Core-core repulsion = 23042.592577 eV Total energy + Delta-G solvation = -3652.407847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.92729 -39.57069 -37.23575 -36.31731 -34.06518 -33.62441 -32.08889 -31.56739 -31.02150 -28.54792 -27.47686 -25.98143 -24.19665 -23.69419 -23.09612 -21.52171 -20.47987 -19.39509 -18.39415 -17.53414 -16.83974 -16.52298 -16.30241 -15.87883 -15.69105 -15.56105 -15.24625 -14.80089 -14.14204 -14.10533 -13.86365 -13.72538 -13.37461 -13.33356 -12.99738 -12.73180 -12.61337 -12.38210 -12.33677 -12.05936 -11.88440 -11.79510 -11.74369 -11.53991 -11.45085 -11.33473 -11.00815 -10.96554 -10.85087 -10.18879 -10.08490 -9.87353 -9.82224 -9.38377 -9.29270 -9.19615 -8.54682 -8.41301 -6.06724 -4.05735 2.36601 2.56525 2.98586 3.14099 3.35352 3.42302 3.52888 4.07635 4.31688 4.45487 4.47801 4.49835 4.56001 4.77849 4.82935 4.90117 4.92213 5.00648 5.04837 5.10421 5.14847 5.26050 5.28932 5.30667 5.34653 5.41120 5.46145 5.52948 5.55062 5.63108 5.72404 5.74589 5.75440 5.83426 5.88135 5.95282 5.99960 6.07548 6.19399 6.47146 6.61902 7.08795 7.31244 7.38163 7.50208 7.74841 7.90610 8.42873 8.52867 8.95612 9.56409 11.05976 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.024659 B = 0.002760 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.220614 B =10141.367583 C =10717.754475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.119 4.119 3 C -0.110 4.110 4 C -0.107 4.107 5 C -0.153 4.153 6 C 0.523 3.477 7 O -0.541 6.541 8 N -0.612 5.612 9 C 0.099 3.901 10 C 0.098 3.902 11 N -0.625 5.625 12 C 0.514 3.486 13 O -0.536 6.536 14 C -0.121 4.121 15 C 0.001 3.999 16 C -0.525 4.525 17 H 0.073 0.927 18 C 0.070 3.930 19 N -0.903 5.903 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.261 1.261 24 C 0.093 3.907 25 C 0.087 3.913 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.023 0.977 44 H 0.019 0.981 45 H 0.263 0.737 46 H 0.072 0.928 47 H 0.107 0.893 48 H 0.080 0.920 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.846 3.813 -22.374 26.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.131 4.131 4 C -0.145 4.145 5 C -0.210 4.210 6 C 0.312 3.688 7 O -0.418 6.418 8 N -0.346 5.346 9 C -0.024 4.024 10 C -0.026 4.026 11 N -0.361 5.361 12 C 0.304 3.696 13 O -0.412 6.412 14 C -0.160 4.160 15 C -0.037 4.037 16 C -0.563 4.563 17 H 0.091 0.909 18 C -0.132 4.132 19 N -0.542 5.542 20 Si 0.704 3.296 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.185 1.185 24 C -0.031 4.031 25 C -0.036 4.036 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.042 0.958 44 H 0.037 0.963 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.125 0.875 48 H 0.098 0.902 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.405 4.507 -21.747 26.471 hybrid contribution -0.062 0.340 0.838 0.907 sum -14.467 4.847 -20.909 25.884 Atomic orbital electron populations 1.21853 0.95179 1.01770 1.02576 1.21611 0.97024 0.93858 1.03130 1.21473 1.01658 0.96535 0.93418 1.21388 1.01573 0.99416 0.92098 1.21829 1.00695 1.00980 0.97528 1.20691 0.82204 0.81865 0.84036 1.90681 1.28596 1.36915 1.85558 1.48079 1.40565 1.37447 1.08481 1.22007 0.97012 0.96530 0.86876 1.21885 0.87749 0.90398 1.02534 1.48217 1.41092 1.37938 1.08840 1.21618 0.82311 0.84523 0.81136 1.90651 1.62452 1.49889 1.38175 1.21696 0.95591 0.95730 1.03030 1.19380 0.96615 0.97863 0.89794 1.21086 1.20568 1.18334 0.96339 0.90927 1.24965 0.94492 0.94825 0.98913 1.69907 1.27441 1.32320 1.24488 0.86805 0.78217 0.81961 0.82628 1.20234 1.21420 1.18543 1.22214 0.96298 0.96558 0.88053 1.22406 0.88306 0.90417 1.02516 0.92448 0.92162 0.92525 0.90339 0.91199 0.88734 0.90682 0.91619 0.92434 0.92481 0.92601 0.90969 0.88105 0.87870 0.91552 0.89583 0.89548 0.95837 0.96285 0.92683 0.90992 0.87489 0.90218 0.88219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.25 37.16 0.34 -0.82 16 2 C -0.12 -0.73 5.18 -26.73 -0.14 -0.87 16 3 C -0.11 -0.80 1.63 -91.77 -0.15 -0.94 16 4 C -0.11 -0.80 4.55 -26.73 -0.12 -0.92 16 5 C -0.15 -0.84 9.55 37.16 0.35 -0.48 16 6 C 0.52 5.43 5.62 -10.99 -0.06 5.36 16 7 O -0.54 -7.43 15.23 5.56 0.08 -7.35 16 8 N -0.61 -5.98 2.95 -172.23 -0.51 -6.48 16 9 C 0.10 1.07 6.58 -3.60 -0.02 1.04 16 10 C 0.10 1.17 6.59 -3.60 -0.02 1.15 16 11 N -0.62 -8.19 2.94 -172.22 -0.51 -8.70 16 12 C 0.51 9.02 7.70 -10.99 -0.08 8.94 16 13 O -0.54 -11.56 15.39 5.56 0.09 -11.47 16 14 C -0.12 -2.22 3.98 -27.89 -0.11 -2.33 16 15 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 16 C -0.53 -14.64 9.66 -34.44 -0.33 -14.97 16 17 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 18 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 19 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 20 Si 0.88 22.31 27.47 -169.99 -4.67 17.64 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.26 -6.63 6.54 56.52 0.37 -6.26 16 24 C 0.09 0.87 6.54 -3.37 -0.02 0.84 16 25 C 0.09 0.68 5.65 -3.37 -0.02 0.66 16 26 H 0.06 0.56 6.71 -51.93 -0.35 0.21 16 27 H 0.06 0.43 6.70 -51.93 -0.35 0.08 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.38 6.71 -51.93 -0.35 0.03 16 30 H 0.07 0.40 6.28 -51.93 -0.33 0.08 16 31 H 0.09 0.55 7.06 -51.93 -0.37 0.18 16 32 H 0.07 0.63 6.26 -51.93 -0.33 0.31 16 33 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 34 H 0.06 0.28 6.90 -51.93 -0.36 -0.08 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.05 0.28 8.13 -51.93 -0.42 -0.14 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.10 1.12 7.02 -51.93 -0.36 0.76 16 39 H 0.10 1.38 6.99 -51.93 -0.36 1.02 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 1.42 7.73 -51.93 -0.40 1.02 16 42 H 0.09 1.45 7.90 -51.93 -0.41 1.04 16 43 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 44 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 45 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.11 0.94 5.91 -51.93 -0.31 0.64 16 48 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.10 0.53 4.67 -51.93 -0.24 0.28 16 LS Contribution 372.93 15.07 5.62 5.62 Total: -1.00 -34.95 372.93 -7.94 -42.89 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -8.24 Total: -3.91 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -0.58 Total: -1.47 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: -0.24 Total: -41.95 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.17 Total: -18.82 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.95 -7.94 -42.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589689705.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.642 kcal (2) G-P(sol) polarization free energy of solvation -34.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds