Wall clock time and date at job start Fri Apr 10 2020 22:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47099 * 2 1 4 4 C 1.52996 * 109.47226 * 299.00323 * 3 2 1 5 5 C 1.52999 * 109.47150 * 293.42054 * 4 3 2 6 6 C 1.50703 * 109.46936 * 59.00206 * 3 2 1 7 7 O 1.21281 * 119.99673 * 256.47120 * 6 3 2 8 8 N 1.34774 * 120.00060 * 76.46604 * 6 3 2 9 9 C 1.46959 * 120.59442 * 174.36217 * 8 6 3 10 10 C 1.53368 * 108.63640 * 235.25138 * 9 8 6 11 11 N 1.46968 * 108.63376 * 310.57293 * 10 9 8 12 12 C 1.34778 * 120.59781 * 235.19909 * 11 10 9 13 13 O 1.21278 * 119.99470 * 0.02562 * 12 11 10 14 14 C 1.50694 * 120.00044 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.47006 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47383 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99685 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00400 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99996 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 119.99814 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47336 * 89.99907 * 20 18 16 22 22 H 1.48503 * 109.47113 * 210.00000 * 20 18 16 23 23 H 1.48505 * 109.47055 * 329.99805 * 20 18 16 24 24 C 1.46967 * 118.80768 * 55.47933 * 11 10 9 25 25 C 1.46960 * 120.59408 * 354.38612 * 8 6 3 26 26 H 1.08997 * 109.47530 * 307.20338 * 1 2 3 27 27 H 1.09001 * 109.46987 * 67.20832 * 1 2 3 28 28 H 1.09003 * 109.47059 * 187.20124 * 1 2 3 29 29 H 1.08997 * 109.47484 * 240.00483 * 2 1 3 30 30 H 1.08996 * 109.47150 * 119.99708 * 2 1 3 31 31 H 1.08993 * 109.47389 * 178.99972 * 3 2 1 32 32 H 1.09000 * 109.47357 * 53.41740 * 4 3 2 33 33 H 1.08998 * 109.47402 * 173.41661 * 4 3 2 34 34 H 1.09002 * 109.47254 * 66.21368 * 5 4 3 35 35 H 1.09004 * 109.47445 * 186.21057 * 5 4 3 36 36 H 1.09001 * 109.47045 * 306.21565 * 5 4 3 37 37 H 1.09000 * 109.61575 * 115.50569 * 9 8 6 38 38 H 1.09004 * 109.61300 * 354.99634 * 9 8 6 39 39 H 1.08999 * 109.61466 * 190.83022 * 10 9 8 40 40 H 1.08998 * 109.75722 * 70.40429 * 10 9 8 41 41 H 1.08999 * 109.47192 * 300.00330 * 14 12 11 42 42 H 1.09003 * 109.47175 * 60.00722 * 14 12 11 43 43 H 1.08999 * 109.46926 * 299.99895 * 15 14 12 44 44 H 1.09004 * 109.47466 * 60.00390 * 15 14 12 45 45 H 0.97005 * 119.99799 * 180.02562 * 19 18 16 46 46 H 1.09004 * 109.61233 * 64.26762 * 24 11 10 47 47 H 1.08999 * 109.60732 * 184.77226 * 24 11 10 48 48 H 1.09001 * 109.61064 * 244.49648 * 25 8 6 49 49 H 1.08997 * 109.61295 * 4.83541 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5506 2.1565 -1.2616 5 6 2.2114 1.5299 -2.4910 6 6 1.5175 2.1600 1.2179 7 8 0.5990 2.9449 1.1118 8 7 2.0709 1.9295 2.4250 9 6 1.6567 2.7101 3.5992 10 6 2.9012 3.3510 4.2256 11 7 3.9302 2.3147 4.3912 12 6 4.4844 2.0848 5.5980 13 8 4.1344 2.7355 6.5598 14 6 5.5379 1.0185 5.7526 15 6 5.9966 0.9624 7.2111 16 6 7.0507 -0.1035 7.3657 17 1 7.3619 -0.6833 6.5093 18 6 7.6177 -0.3386 8.6003 19 7 8.5371 -1.2692 8.7351 20 14 7.0787 0.6636 10.0816 21 1 5.9406 -0.0156 10.7513 22 1 8.2113 0.7873 11.0341 23 1 6.6559 2.0160 9.6370 24 6 4.3485 1.5379 3.2158 25 6 3.0998 0.8933 2.5905 26 1 -0.3634 0.6213 0.8185 27 1 -0.3633 0.3981 -0.9474 28 1 -0.3633 -1.0196 0.1288 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.1298 1.4427 0.0179 32 1 0.4681 2.0553 -1.3396 33 1 1.8136 3.2129 -1.2064 34 1 1.8613 0.5043 -2.6086 35 1 1.9497 2.1070 -3.3780 36 1 3.2938 1.5318 -2.3624 37 1 1.1788 2.0528 4.3256 38 1 0.9588 3.4894 3.2928 39 1 2.6460 3.7716 5.1982 40 1 3.2775 4.1393 3.5736 41 1 5.1222 0.0527 5.4654 42 1 6.3886 1.2528 5.1126 43 1 6.4122 1.9282 7.4987 44 1 5.1458 0.7279 7.8509 45 1 8.9357 -1.4348 9.6038 46 1 4.8243 2.1985 2.4910 47 1 5.0492 0.7609 3.5213 48 1 2.7247 0.1065 3.2450 49 1 3.3530 0.4705 1.6183 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589689705.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:06 Heat of formation + Delta-G solvation = -106.854846 kcal Electronic energy + Delta-G solvation = -26695.968598 eV Core-core repulsion = 23042.592577 eV Total energy + Delta-G solvation = -3653.376021 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.78919 -40.73363 -38.25079 -37.00871 -35.58480 -35.09875 -33.51317 -32.46974 -32.04582 -29.45546 -28.50345 -27.39772 -24.99335 -24.44394 -24.01724 -22.92480 -21.56424 -20.32971 -19.51755 -18.97569 -18.14734 -17.39519 -17.25104 -16.85249 -16.75952 -16.72098 -16.19703 -15.95412 -15.56036 -15.14535 -14.95426 -14.77557 -14.58368 -14.19361 -14.01180 -13.83688 -13.73289 -13.52168 -13.38031 -12.92688 -12.91083 -12.67985 -12.62077 -12.50079 -12.44699 -12.27366 -12.00469 -11.99120 -11.96562 -11.76038 -11.49445 -11.37866 -11.37163 -10.76983 -10.75275 -10.67142 -10.30408 -9.39302 -8.30317 -6.32309 1.32956 1.35849 1.50027 1.54756 1.67468 1.70313 2.14764 2.35499 3.05836 3.41182 3.58918 3.75991 3.79374 3.89249 3.98265 4.09933 4.17925 4.22353 4.30485 4.36192 4.39230 4.46991 4.49876 4.50504 4.59417 4.62264 4.65116 4.74753 4.77912 4.87919 4.92768 4.94313 5.01965 5.06349 5.21965 5.26322 5.31659 5.33190 5.36759 5.38540 5.45044 5.49405 5.57861 5.62008 6.23086 6.27885 6.39744 6.74187 7.12046 7.18210 7.33201 8.85018 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.024659 B = 0.002760 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.220614 B =10141.367583 C =10717.754475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.105 4.105 4 C -0.106 4.106 5 C -0.148 4.148 6 C 0.520 3.480 7 O -0.581 6.581 8 N -0.612 5.612 9 C 0.106 3.894 10 C 0.102 3.898 11 N -0.614 5.614 12 C 0.515 3.485 13 O -0.586 6.586 14 C -0.112 4.112 15 C 0.004 3.996 16 C -0.524 4.524 17 H 0.056 0.944 18 C 0.015 3.985 19 N -0.942 5.942 20 Si 0.933 3.067 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.263 1.263 24 C 0.085 3.915 25 C 0.089 3.911 26 H 0.028 0.972 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.006 0.994 44 H 0.006 0.994 45 H 0.267 0.733 46 H 0.093 0.907 47 H 0.118 0.882 48 H 0.081 0.919 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.668 3.129 -24.345 28.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.126 4.126 4 C -0.144 4.144 5 C -0.205 4.205 6 C 0.310 3.690 7 O -0.461 6.461 8 N -0.345 5.345 9 C -0.018 4.018 10 C -0.021 4.021 11 N -0.348 5.348 12 C 0.306 3.694 13 O -0.466 6.466 14 C -0.152 4.152 15 C -0.034 4.034 16 C -0.562 4.562 17 H 0.074 0.926 18 C -0.183 4.183 19 N -0.583 5.583 20 Si 0.758 3.242 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.188 1.188 24 C -0.038 4.038 25 C -0.034 4.034 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.098 0.902 31 H 0.138 0.862 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.025 0.975 44 H 0.024 0.976 45 H 0.076 0.924 46 H 0.111 0.889 47 H 0.136 0.864 48 H 0.100 0.900 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.224 3.800 -23.774 27.963 hybrid contribution -0.152 0.545 1.343 1.457 sum -14.376 4.345 -22.431 26.994 Atomic orbital electron populations 1.21839 0.96523 1.01614 1.01373 1.21655 0.95780 0.93122 1.04711 1.21548 1.02949 0.96676 0.91389 1.21352 1.00855 0.98795 0.93364 1.21798 1.01131 1.01288 0.96300 1.21326 0.81507 0.81313 0.84819 1.90666 1.30475 1.38822 1.86137 1.48170 1.40817 1.37541 1.07946 1.21811 0.96205 0.96486 0.87272 1.21886 0.87913 0.90413 1.01925 1.48175 1.40155 1.37821 1.08618 1.21366 0.82225 0.83964 0.81892 1.90636 1.64141 1.51634 1.40182 1.21516 0.96826 0.97451 0.99393 1.19236 0.94960 0.95477 0.93720 1.21413 1.20744 1.18419 0.95647 0.92575 1.25743 0.94791 0.95913 1.01804 1.70010 1.28884 1.34016 1.25355 0.85908 0.78162 0.80362 0.79741 1.19521 1.20519 1.18793 1.22579 0.97362 0.96963 0.86870 1.22580 0.86890 0.89626 1.04316 0.95262 0.92268 0.91654 0.88051 0.90210 0.86172 0.92291 0.93256 0.91408 0.92514 0.91511 0.91464 0.88718 0.89691 0.90398 0.87380 0.87631 0.97530 0.97551 0.92438 0.88922 0.86420 0.90049 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.25 71.98 0.67 -1.41 16 2 C -0.12 -1.03 5.18 30.60 0.16 -0.87 16 3 C -0.10 -1.22 1.63 -11.54 -0.02 -1.24 16 4 C -0.11 -1.40 4.55 30.59 0.14 -1.26 16 5 C -0.15 -1.20 9.55 71.98 0.69 -0.51 16 6 C 0.52 9.97 5.62 87.66 0.49 10.46 16 7 O -0.58 -15.98 15.23 -3.03 -0.05 -16.03 16 8 N -0.61 -10.68 2.95 -817.19 -2.41 -13.09 16 9 C 0.11 2.21 6.58 86.42 0.57 2.78 16 10 C 0.10 2.34 6.59 86.41 0.57 2.91 16 11 N -0.61 -14.88 2.94 -817.16 -2.40 -17.29 16 12 C 0.51 17.49 7.70 87.65 0.67 18.16 16 13 O -0.59 -25.36 15.39 -3.02 -0.05 -25.41 16 14 C -0.11 -3.92 3.98 29.85 0.12 -3.81 16 15 C 0.00 0.19 3.33 29.85 0.10 0.29 16 16 C -0.52 -29.12 9.66 25.60 0.25 -28.88 16 17 H 0.06 3.23 7.99 -2.91 -0.02 3.21 16 18 C 0.02 0.89 5.47 84.66 0.46 1.35 16 19 N -0.94 -57.72 13.96 21.45 0.30 -57.42 16 20 Si 0.93 46.15 27.47 68.60 1.88 48.04 16 21 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 22 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 23 H -0.26 -13.03 6.54 99.48 0.65 -12.38 16 24 C 0.08 1.27 6.54 86.56 0.57 1.83 16 25 C 0.09 1.06 5.65 86.56 0.49 1.55 16 26 H 0.03 0.55 6.71 -2.39 -0.02 0.53 16 27 H 0.06 0.78 6.70 -2.39 -0.02 0.76 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.10 0.51 6.71 -2.39 -0.02 0.50 16 30 H 0.08 0.58 6.28 -2.39 -0.01 0.57 16 31 H 0.12 0.82 7.06 -2.39 -0.02 0.80 16 32 H 0.06 0.96 6.26 -2.39 -0.01 0.95 16 33 H 0.05 0.80 8.13 -2.39 -0.02 0.78 16 34 H 0.07 0.42 6.90 -2.39 -0.02 0.41 16 35 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 36 H 0.07 0.42 8.13 -2.39 -0.02 0.40 16 37 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.09 2.12 7.02 -2.39 -0.02 2.11 16 39 H 0.08 2.31 6.99 -2.39 -0.02 2.29 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.11 3.29 7.73 -2.39 -0.02 3.27 16 42 H 0.11 3.28 7.90 -2.39 -0.02 3.26 16 43 H 0.01 0.32 7.16 -2.39 -0.02 0.31 16 44 H 0.01 0.31 7.53 -2.39 -0.02 0.29 16 45 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 46 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 47 H 0.12 1.58 5.91 -2.39 -0.01 1.56 16 48 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.13 0.73 4.67 -2.39 -0.01 0.71 16 Total: -1.00 -77.58 372.93 4.07 -73.50 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 0.87 Total: 6.31 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 5.92 Total: 1.38 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -4.51 Total: -87.80 kcal Atomic # 8 Polarization: -41.34 SS G_CDS: -0.09 Total: -41.43 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.88 Total: 48.04 kcal Total: -77.58 4.07 -73.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589689705.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.352 kcal (2) G-P(sol) polarization free energy of solvation -77.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds