Wall clock time and date at job start Fri Apr 10 2020 22:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47147 * 2 1 4 4 C 1.53001 * 109.46878 * 119.99740 * 2 1 3 5 5 C 1.52999 * 109.47572 * 63.75783 * 4 2 1 6 6 C 1.53004 * 115.55932 * 268.92976 * 5 4 2 7 7 N 1.46500 * 109.47106 * 319.59160 * 6 5 4 8 8 C 1.34778 * 119.99922 * 181.15104 * 7 6 5 9 9 O 1.21579 * 119.99965 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99803 * 180.02562 * 8 7 6 11 11 C 1.47423 * 125.64943 * 359.68635 * 10 8 7 12 12 C 1.55134 * 104.72522 * 155.82102 * 11 10 8 13 13 C 1.55158 * 101.48080 * 37.29323 * 12 11 10 14 14 O 1.42904 * 110.71884 * 82.70275 * 13 12 11 15 15 C 1.50702 * 110.86808 * 205.89889 * 13 12 11 16 16 H 1.08003 * 120.00118 * 117.00849 * 15 13 12 17 17 C 1.37876 * 120.00301 * 297.00771 * 15 13 12 18 18 N 1.31520 * 120.00177 * 183.32839 * 17 15 13 19 19 Si 1.86799 * 119.99987 * 3.32603 * 17 15 13 20 20 H 1.48501 * 109.47138 * 92.83601 * 19 17 15 21 21 H 1.48505 * 109.47290 * 212.83988 * 19 17 15 22 22 H 1.48500 * 109.47041 * 332.83586 * 19 17 15 23 23 C 1.47020 * 125.64936 * 179.97438 * 10 8 7 24 24 C 1.52993 * 117.50228 * 123.23458 * 5 4 2 25 25 C 1.52998 * 117.49764 * 54.60840 * 5 4 2 26 26 H 1.08995 * 109.47358 * 293.63233 * 1 2 3 27 27 H 1.09000 * 109.46536 * 53.63488 * 1 2 3 28 28 H 1.09001 * 109.46539 * 173.62775 * 1 2 3 29 29 H 1.08993 * 109.47467 * 239.99512 * 2 1 3 30 30 H 1.09002 * 109.47257 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47397 * 299.99670 * 3 2 1 32 32 H 1.09003 * 109.47217 * 59.99486 * 3 2 1 33 33 H 1.09002 * 109.47149 * 303.75306 * 4 2 1 34 34 H 1.09004 * 109.47441 * 183.75729 * 4 2 1 35 35 H 1.08997 * 109.47255 * 79.59298 * 6 5 4 36 36 H 1.09004 * 109.46769 * 199.59297 * 6 5 4 37 37 H 0.96996 * 119.99775 * 1.14414 * 7 6 5 38 38 H 1.09001 * 110.36762 * 274.74905 * 11 10 8 39 39 H 1.09004 * 110.37038 * 37.06960 * 11 10 8 40 40 H 1.08999 * 111.18794 * 279.19189 * 12 11 10 41 41 H 1.08998 * 110.94125 * 155.28827 * 12 11 10 42 42 H 0.96699 * 113.99875 * 185.02038 * 14 13 12 43 43 H 0.96993 * 120.00091 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.88153 * 300.43762 * 23 10 8 45 45 H 1.09002 * 109.88313 * 61.44856 * 23 10 8 46 46 H 1.09000 * 117.50140 * 0.02562 * 24 5 4 47 47 H 1.09000 * 117.49794 * 145.02509 * 24 5 4 48 48 H 1.08993 * 117.50111 * 214.98364 * 25 5 4 49 49 H 1.09002 * 117.49803 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6086 -2.1884 1.2031 6 6 0.2672 -2.5034 1.8681 7 7 0.1466 -1.7374 3.1111 8 6 -0.9502 -1.8732 3.8826 9 8 -1.8396 -2.6310 3.5468 10 7 -1.0614 -1.1681 5.0258 11 6 -0.0608 -0.2223 5.5527 12 6 -0.8686 0.7398 6.4630 13 6 -1.8963 -0.2306 7.1028 14 8 -1.3214 -0.9111 8.2202 15 6 -3.1454 0.5053 7.5144 16 1 -4.0918 0.2621 7.0543 17 6 -3.0800 1.4890 8.4782 18 7 -4.1794 2.0858 8.8844 19 14 -1.4300 1.9743 9.2071 20 1 -0.8680 3.1168 8.4428 21 1 -1.6131 2.3705 10.6266 22 1 -0.4972 0.8213 9.1315 23 6 -2.1979 -1.2192 5.9570 24 6 2.7064 -3.2506 1.2890 25 6 1.9889 -2.9977 -0.0384 26 1 -0.3634 0.4119 0.9414 27 1 -0.3632 0.6094 -0.8276 28 1 -0.3632 -1.0214 -0.1141 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6227 -0.2476 2.1380 34 1 3.1279 -0.6633 1.2837 35 1 -0.5452 -2.2322 1.1939 36 1 0.2137 -3.5690 2.0914 37 1 0.8560 -1.1326 3.3788 38 1 0.6941 -0.7529 6.1330 39 1 0.4056 0.3301 4.7369 40 1 -1.3704 1.5090 5.8760 41 1 -0.2278 1.1869 7.2229 42 1 -1.8961 -1.5849 8.6086 43 1 -4.1334 2.7781 9.5622 44 1 -3.1122 -0.9231 5.4426 45 1 -2.3066 -2.2285 6.3542 46 1 3.7360 -2.9042 1.3790 47 1 2.4730 -4.1738 1.8194 48 1 1.2835 -3.7545 -0.3813 49 1 2.5467 -2.4850 -0.8221 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591982599.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:11 Heat of formation + Delta-G solvation = -51.705738 kcal Electronic energy + Delta-G solvation = -27194.642470 eV Core-core repulsion = 23543.657893 eV Total energy + Delta-G solvation = -3650.984577 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.17965 -39.11865 -37.58213 -35.20925 -34.51583 -33.94053 -32.41544 -30.27230 -28.48976 -27.83328 -27.47496 -26.62009 -24.69543 -22.83998 -22.53279 -20.79265 -19.99308 -19.50744 -19.04649 -17.95651 -17.38392 -16.36457 -15.72779 -15.52574 -14.92787 -14.85507 -14.80848 -14.53409 -14.30445 -13.82340 -13.74789 -13.29393 -13.04172 -12.93651 -12.83181 -12.47537 -12.40912 -12.22786 -12.12918 -11.84913 -11.65288 -11.59720 -11.33546 -11.21761 -11.13810 -10.89846 -10.81627 -10.62366 -10.51650 -10.31179 -10.07456 -9.93185 -9.71411 -8.99339 -8.90754 -8.74184 -8.49114 -8.01421 -6.21648 -4.33635 2.89261 3.28205 3.40768 3.46105 3.57492 3.59693 4.24410 4.34381 4.41349 4.48677 4.51207 4.63650 4.83530 4.86524 5.03030 5.07395 5.14827 5.30369 5.34626 5.41628 5.48146 5.48920 5.55740 5.58202 5.59433 5.63023 5.72829 5.74726 5.76636 5.80867 5.85108 5.86348 5.93224 6.02117 6.11317 6.16490 6.23788 6.48575 6.57476 6.63019 6.64940 6.69416 7.12372 7.35253 7.51335 8.18753 8.32014 8.73616 8.89566 8.93013 9.41233 10.88768 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019392 B = 0.003469 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.551673 B = 8069.582812 C = 8562.736624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.149 4.149 4 C -0.080 4.080 5 C -0.137 4.137 6 C 0.177 3.823 7 N -0.745 5.745 8 C 0.718 3.282 9 O -0.598 6.598 10 N -0.628 5.628 11 C 0.103 3.897 12 C -0.124 4.124 13 C 0.217 3.783 14 O -0.572 6.572 15 C -0.550 4.550 16 H 0.079 0.921 17 C 0.088 3.912 18 N -0.887 5.887 19 Si 0.872 3.128 20 H -0.286 1.286 21 H -0.298 1.298 22 H -0.221 1.221 23 C 0.115 3.885 24 C -0.172 4.172 25 C -0.163 4.163 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.394 0.606 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.365 0.635 43 H 0.267 0.733 44 H 0.071 0.929 45 H 0.055 0.945 46 H 0.094 0.906 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.935 -5.135 -16.366 23.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.207 4.207 4 C -0.118 4.118 5 C -0.138 4.138 6 C 0.053 3.947 7 N -0.404 5.404 8 C 0.420 3.580 9 O -0.477 6.477 10 N -0.365 5.365 11 C -0.020 4.020 12 C -0.162 4.162 13 C 0.176 3.824 14 O -0.379 6.379 15 C -0.588 4.588 16 H 0.097 0.903 17 C -0.117 4.117 18 N -0.523 5.523 19 Si 0.700 3.300 20 H -0.213 1.213 21 H -0.225 1.225 22 H -0.144 1.144 23 C -0.008 4.008 24 C -0.208 4.208 25 C -0.201 4.201 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.231 0.769 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.212 0.788 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.074 0.926 46 H 0.113 0.887 47 H 0.114 0.886 48 H 0.114 0.886 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 15.687 -5.224 -16.701 23.501 hybrid contribution 0.576 0.389 0.676 0.970 sum 16.263 -4.835 -16.024 23.338 Atomic orbital electron populations 1.21945 0.94857 1.02039 1.01824 1.21089 0.96320 0.95682 0.97832 1.21864 1.00630 0.96179 1.02009 1.21246 1.00264 0.91776 0.98521 1.21664 0.95987 0.93531 1.02574 1.20673 0.94383 0.95311 0.84354 1.45171 1.21510 1.49194 1.24508 1.15438 0.82461 0.80686 0.79384 1.90886 1.41203 1.42090 1.73553 1.47670 1.22413 1.44654 1.21786 1.22332 0.91858 0.91055 0.96778 1.23129 0.97637 0.97447 0.97993 1.19968 0.91731 0.88172 0.82478 1.86521 1.47517 1.55371 1.48485 1.21208 0.93614 1.20148 1.23783 0.90328 1.24951 0.96879 0.94840 0.95012 1.69936 1.27871 1.24907 1.29629 0.87115 0.85796 0.79562 0.77571 1.21325 1.22549 1.14438 1.22654 0.87936 0.99777 0.90411 1.23192 0.96963 1.00069 1.00620 1.22973 1.03401 1.02492 0.91199 0.92524 0.93104 0.92155 0.91241 0.92925 0.92716 0.92520 0.91256 0.91555 0.91070 0.91881 0.76927 0.91764 0.92328 0.89404 0.90647 0.78812 0.92379 0.91027 0.92617 0.88730 0.88643 0.88557 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.38 37.16 0.31 -1.10 16 2 C -0.09 -0.72 2.78 -90.62 -0.25 -0.97 16 3 C -0.15 -1.13 9.19 37.15 0.34 -0.78 16 4 C -0.08 -0.65 4.64 -26.73 -0.12 -0.77 16 5 C -0.14 -1.18 1.47 -154.51 -0.23 -1.40 16 6 C 0.18 2.08 5.20 -4.04 -0.02 2.06 16 7 N -0.75 -10.15 5.21 -65.22 -0.34 -10.49 16 8 C 0.72 13.16 8.49 -86.92 -0.74 12.42 16 9 O -0.60 -13.13 16.67 5.30 0.09 -13.04 16 10 N -0.63 -11.67 3.32 -176.10 -0.59 -12.26 16 11 C 0.10 1.68 6.58 -2.41 -0.02 1.67 16 12 C -0.12 -2.46 4.92 -24.46 -0.12 -2.58 16 13 C 0.22 4.78 0.67 -89.94 -0.06 4.72 16 14 O -0.57 -12.22 10.24 -35.23 -0.36 -12.58 16 15 C -0.55 -14.58 8.82 -34.44 -0.30 -14.88 16 16 H 0.08 2.29 7.81 -52.48 -0.41 1.88 16 17 C 0.09 2.43 5.47 -17.82 -0.10 2.33 16 18 N -0.89 -26.17 13.96 55.43 0.77 -25.39 16 19 Si 0.87 20.72 24.27 -169.99 -4.13 16.60 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.22 -5.07 5.01 56.52 0.28 -4.79 16 23 C 0.12 2.40 6.21 -3.07 -0.02 2.39 16 24 C -0.17 -1.32 9.82 -26.73 -0.26 -1.58 16 25 C -0.16 -1.18 9.38 -26.73 -0.25 -1.43 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.59 5.69 -51.93 -0.30 0.30 16 29 H 0.07 0.51 6.83 -51.93 -0.35 0.16 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.62 5.82 -51.93 -0.30 0.32 16 34 H 0.07 0.48 7.87 -51.93 -0.41 0.07 16 35 H 0.07 0.90 6.07 -51.93 -0.32 0.58 16 36 H 0.06 0.80 7.95 -51.93 -0.41 0.39 16 37 H 0.39 4.63 4.92 -40.82 -0.20 4.43 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.78 7.29 -51.93 -0.38 0.40 16 40 H 0.09 1.77 8.04 -51.93 -0.42 1.35 16 41 H 0.08 1.50 4.95 -51.93 -0.26 1.25 16 42 H 0.36 6.84 9.08 45.56 0.41 7.26 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.07 1.61 7.65 -51.93 -0.40 1.22 16 45 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 46 H 0.09 0.64 8.03 -51.93 -0.42 0.23 16 47 H 0.10 0.77 8.09 -51.93 -0.42 0.35 16 48 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.10 0.62 7.24 -51.93 -0.38 0.24 16 LS Contribution 371.60 15.07 5.60 5.60 Total: -1.00 -31.82 371.60 -8.37 -40.18 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -7.58 Total: 11.30 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -1.84 Total: 0.09 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -0.15 Total: -48.14 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.27 Total: -25.62 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.13 Total: 16.60 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.82 -8.37 -40.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591982599.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.522 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds