Wall clock time and date at job start Fri Apr 10 2020 22:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47147 * 2 1 4 4 C 1.53001 * 109.46878 * 119.99740 * 2 1 3 5 5 C 1.52999 * 109.47572 * 63.75783 * 4 2 1 6 6 C 1.53004 * 115.55932 * 268.92976 * 5 4 2 7 7 N 1.46500 * 109.47106 * 319.59160 * 6 5 4 8 8 C 1.34778 * 119.99922 * 181.15104 * 7 6 5 9 9 O 1.21579 * 119.99965 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99803 * 180.02562 * 8 7 6 11 11 C 1.47423 * 125.64943 * 359.68635 * 10 8 7 12 12 C 1.55134 * 104.72522 * 155.82102 * 11 10 8 13 13 C 1.55158 * 101.48080 * 37.29323 * 12 11 10 14 14 O 1.42904 * 110.71884 * 82.70275 * 13 12 11 15 15 C 1.50702 * 110.86808 * 205.89889 * 13 12 11 16 16 H 1.08003 * 120.00118 * 117.00849 * 15 13 12 17 17 C 1.37876 * 120.00301 * 297.00771 * 15 13 12 18 18 N 1.31520 * 120.00177 * 183.32839 * 17 15 13 19 19 Si 1.86799 * 119.99987 * 3.32603 * 17 15 13 20 20 H 1.48501 * 109.47138 * 92.83601 * 19 17 15 21 21 H 1.48505 * 109.47290 * 212.83988 * 19 17 15 22 22 H 1.48500 * 109.47041 * 332.83586 * 19 17 15 23 23 C 1.47020 * 125.64936 * 179.97438 * 10 8 7 24 24 C 1.52993 * 117.50228 * 123.23458 * 5 4 2 25 25 C 1.52998 * 117.49764 * 54.60840 * 5 4 2 26 26 H 1.08995 * 109.47358 * 293.63233 * 1 2 3 27 27 H 1.09000 * 109.46536 * 53.63488 * 1 2 3 28 28 H 1.09001 * 109.46539 * 173.62775 * 1 2 3 29 29 H 1.08993 * 109.47467 * 239.99512 * 2 1 3 30 30 H 1.09002 * 109.47257 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47397 * 299.99670 * 3 2 1 32 32 H 1.09003 * 109.47217 * 59.99486 * 3 2 1 33 33 H 1.09002 * 109.47149 * 303.75306 * 4 2 1 34 34 H 1.09004 * 109.47441 * 183.75729 * 4 2 1 35 35 H 1.08997 * 109.47255 * 79.59298 * 6 5 4 36 36 H 1.09004 * 109.46769 * 199.59297 * 6 5 4 37 37 H 0.96996 * 119.99775 * 1.14414 * 7 6 5 38 38 H 1.09001 * 110.36762 * 274.74905 * 11 10 8 39 39 H 1.09004 * 110.37038 * 37.06960 * 11 10 8 40 40 H 1.08999 * 111.18794 * 279.19189 * 12 11 10 41 41 H 1.08998 * 110.94125 * 155.28827 * 12 11 10 42 42 H 0.96699 * 113.99875 * 185.02038 * 14 13 12 43 43 H 0.96993 * 120.00091 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.88153 * 300.43762 * 23 10 8 45 45 H 1.09002 * 109.88313 * 61.44856 * 23 10 8 46 46 H 1.09000 * 117.50140 * 0.02562 * 24 5 4 47 47 H 1.09000 * 117.49794 * 145.02509 * 24 5 4 48 48 H 1.08993 * 117.50111 * 214.98364 * 25 5 4 49 49 H 1.09002 * 117.49803 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6086 -2.1884 1.2031 6 6 0.2672 -2.5034 1.8681 7 7 0.1466 -1.7374 3.1111 8 6 -0.9502 -1.8732 3.8826 9 8 -1.8396 -2.6310 3.5468 10 7 -1.0614 -1.1681 5.0258 11 6 -0.0608 -0.2223 5.5527 12 6 -0.8686 0.7398 6.4630 13 6 -1.8963 -0.2306 7.1028 14 8 -1.3214 -0.9111 8.2202 15 6 -3.1454 0.5053 7.5144 16 1 -4.0918 0.2621 7.0543 17 6 -3.0800 1.4890 8.4782 18 7 -4.1794 2.0858 8.8844 19 14 -1.4300 1.9743 9.2071 20 1 -0.8680 3.1168 8.4428 21 1 -1.6131 2.3705 10.6266 22 1 -0.4972 0.8213 9.1315 23 6 -2.1979 -1.2192 5.9570 24 6 2.7064 -3.2506 1.2890 25 6 1.9889 -2.9977 -0.0384 26 1 -0.3634 0.4119 0.9414 27 1 -0.3632 0.6094 -0.8276 28 1 -0.3632 -1.0214 -0.1141 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6227 -0.2476 2.1380 34 1 3.1279 -0.6633 1.2837 35 1 -0.5452 -2.2322 1.1939 36 1 0.2137 -3.5690 2.0914 37 1 0.8560 -1.1326 3.3788 38 1 0.6941 -0.7529 6.1330 39 1 0.4056 0.3301 4.7369 40 1 -1.3704 1.5090 5.8760 41 1 -0.2278 1.1869 7.2229 42 1 -1.8961 -1.5849 8.6086 43 1 -4.1334 2.7781 9.5622 44 1 -3.1122 -0.9231 5.4426 45 1 -2.3066 -2.2285 6.3542 46 1 3.7360 -2.9042 1.3790 47 1 2.4730 -4.1738 1.8194 48 1 1.2835 -3.7545 -0.3813 49 1 2.5467 -2.4850 -0.8221 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591982599.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:11 Heat of formation + Delta-G solvation = -74.121017 kcal Electronic energy + Delta-G solvation = -27195.614469 eV Core-core repulsion = 23543.657893 eV Total energy + Delta-G solvation = -3651.956576 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.48340 -40.11142 -39.08811 -36.16698 -35.86373 -35.13965 -34.49609 -31.88313 -30.05666 -28.73511 -28.22278 -27.68891 -26.34211 -24.09516 -23.37893 -21.64827 -21.54367 -20.94931 -19.88856 -19.47917 -18.92918 -17.48426 -17.01238 -16.87715 -16.65735 -16.45949 -15.74988 -15.51627 -15.17678 -15.02996 -14.95908 -14.75899 -14.65041 -14.16499 -14.02904 -13.81784 -13.62348 -13.22441 -13.12534 -13.05482 -12.95534 -12.83446 -12.44397 -12.40284 -12.23941 -12.19789 -11.91714 -11.79553 -11.58553 -11.46276 -11.31758 -11.09702 -10.92369 -10.79723 -10.62037 -10.32503 -10.14387 -9.45908 -8.35226 -6.51625 1.39714 1.48270 1.57697 1.71500 2.10000 2.41767 2.78126 3.00526 3.06008 3.55199 3.66044 3.77028 3.82109 3.84537 4.01482 4.03024 4.17301 4.22431 4.24776 4.38936 4.42394 4.53027 4.62935 4.69183 4.78455 4.80061 4.83404 4.89455 4.92544 4.96187 5.00770 5.07382 5.08115 5.08466 5.12502 5.13175 5.27411 5.32285 5.38552 5.44688 5.47090 5.50740 5.52285 5.56994 6.06332 6.08254 6.59298 6.97137 7.11950 7.30096 7.51550 8.79208 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019392 B = 0.003469 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.551673 B = 8069.582812 C = 8562.736624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.149 4.149 4 C -0.077 4.077 5 C -0.143 4.143 6 C 0.177 3.823 7 N -0.724 5.724 8 C 0.714 3.286 9 O -0.641 6.641 10 N -0.631 5.631 11 C 0.111 3.889 12 C -0.127 4.127 13 C 0.220 3.780 14 O -0.570 6.570 15 C -0.553 4.553 16 H 0.033 0.967 17 C 0.035 3.965 18 N -0.939 5.939 19 Si 0.938 3.062 20 H -0.272 1.272 21 H -0.307 1.307 22 H -0.201 1.201 23 C 0.123 3.877 24 C -0.166 4.166 25 C -0.154 4.154 26 H 0.036 0.964 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.407 0.593 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.375 0.625 43 H 0.268 0.732 44 H 0.042 0.958 45 H 0.055 0.945 46 H 0.110 0.890 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.161 -5.128 -17.428 27.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.105 4.105 3 C -0.206 4.206 4 C -0.115 4.115 5 C -0.143 4.143 6 C 0.053 3.947 7 N -0.382 5.382 8 C 0.416 3.584 9 O -0.523 6.523 10 N -0.368 5.368 11 C -0.011 4.011 12 C -0.165 4.165 13 C 0.179 3.821 14 O -0.377 6.377 15 C -0.591 4.591 16 H 0.051 0.949 17 C -0.165 4.165 18 N -0.577 5.577 19 Si 0.762 3.238 20 H -0.198 1.198 21 H -0.235 1.235 22 H -0.123 1.123 23 C -0.001 4.001 24 C -0.203 4.203 25 C -0.191 4.191 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.246 0.754 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.224 0.776 43 H 0.077 0.923 44 H 0.060 0.940 45 H 0.073 0.927 46 H 0.128 0.872 47 H 0.107 0.893 48 H 0.113 0.887 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 19.965 -5.219 -17.794 27.248 hybrid contribution -0.869 0.315 0.943 1.320 sum 19.097 -4.904 -16.850 25.936 Atomic orbital electron populations 1.21930 0.96422 1.01401 1.00817 1.21068 0.94818 0.96193 0.98386 1.21854 1.01398 0.95675 1.01659 1.21239 1.01242 0.90942 0.98057 1.21517 0.94605 0.94416 1.03793 1.20751 0.96227 0.94375 0.83353 1.45044 1.20161 1.48839 1.24138 1.15633 0.83056 0.80255 0.79451 1.90855 1.43046 1.43936 1.74484 1.47601 1.22181 1.45333 1.21696 1.22434 0.90924 0.90132 0.97629 1.23074 0.97345 0.97412 0.98628 1.19767 0.90840 0.88621 0.82870 1.86461 1.47425 1.55677 1.48159 1.21435 0.94001 1.20443 1.23177 0.94903 1.25821 1.00485 0.94738 0.95464 1.70078 1.30481 1.26190 1.30969 0.86109 0.81499 0.80113 0.76043 1.19836 1.23546 1.12321 1.22314 0.88000 0.99322 0.90470 1.23251 0.97280 0.99203 1.00543 1.23061 1.03016 1.01847 0.91202 0.94491 0.92848 0.92889 0.90095 0.91665 0.92639 0.93378 0.92112 0.89772 0.92292 0.92978 0.75393 0.89908 0.88485 0.90267 0.89860 0.77588 0.92306 0.93952 0.92692 0.87169 0.89263 0.88706 0.86842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.38 71.98 0.60 -2.03 16 2 C -0.09 -1.14 2.78 -10.79 -0.03 -1.17 16 3 C -0.15 -1.84 9.19 71.98 0.66 -1.18 16 4 C -0.08 -1.00 4.64 30.59 0.14 -0.86 16 5 C -0.14 -2.09 1.47 -52.18 -0.08 -2.17 16 6 C 0.18 3.96 5.20 86.38 0.45 4.40 16 7 N -0.72 -18.51 5.21 -478.54 -2.49 -21.00 16 8 C 0.71 25.69 8.49 179.06 1.52 27.21 16 9 O -0.64 -28.58 16.67 -3.97 -0.07 -28.65 16 10 N -0.63 -22.72 3.32 -829.33 -2.76 -25.48 16 11 C 0.11 3.26 6.58 86.93 0.57 3.83 16 12 C -0.13 -4.72 4.92 32.07 0.16 -4.57 16 13 C 0.22 9.57 0.67 -10.35 -0.01 9.57 16 14 O -0.57 -23.20 10.24 -148.98 -1.53 -24.72 16 15 C -0.55 -30.19 8.82 25.60 0.23 -29.97 16 16 H 0.03 2.04 7.81 -2.91 -0.02 2.01 16 17 C 0.04 1.95 5.47 84.65 0.46 2.42 16 18 N -0.94 -57.14 13.96 21.45 0.30 -56.84 16 19 Si 0.94 42.26 24.27 68.60 1.66 43.93 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.31 -14.28 7.11 99.48 0.71 -13.58 16 22 H -0.20 -8.36 5.01 99.48 0.50 -7.86 16 23 C 0.12 5.21 6.21 86.73 0.54 5.75 16 24 C -0.17 -2.02 9.82 30.59 0.30 -1.72 16 25 C -0.15 -1.78 9.38 30.59 0.29 -1.49 16 26 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 1.00 5.69 -2.39 -0.01 0.99 16 29 H 0.08 0.91 6.83 -2.39 -0.02 0.90 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.89 5.82 -2.39 -0.01 0.87 16 34 H 0.08 0.84 7.87 -2.39 -0.02 0.82 16 35 H 0.06 1.48 6.07 -2.39 -0.01 1.47 16 36 H 0.05 1.29 7.95 -2.39 -0.02 1.27 16 37 H 0.41 8.34 4.92 -92.71 -0.46 7.88 16 38 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.10 2.14 7.29 -2.38 -0.02 2.13 16 40 H 0.08 3.08 8.04 -2.39 -0.02 3.06 16 41 H 0.08 3.00 4.95 -2.39 -0.01 2.99 16 42 H 0.38 13.62 9.08 -74.06 -0.67 12.95 16 43 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 44 H 0.04 2.01 7.65 -2.39 -0.02 1.99 16 45 H 0.05 2.30 8.06 -2.39 -0.02 2.28 16 46 H 0.11 1.04 8.03 -2.39 -0.02 1.02 16 47 H 0.09 1.22 8.09 -2.39 -0.02 1.20 16 48 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.11 0.99 7.24 -2.39 -0.02 0.98 16 Total: -1.00 -71.38 371.60 0.54 -70.84 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: -0.38 Total: 33.91 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 5.81 Total: 8.02 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -4.95 Total: -103.33 kcal Atomic # 8 Polarization: -51.78 SS G_CDS: -1.59 Total: -53.37 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.66 Total: 43.93 kcal Total: -71.38 0.54 -70.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591982599.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.284 kcal (2) G-P(sol) polarization free energy of solvation -71.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds