Wall clock time and date at job start Fri Apr 10 2020 22:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47144 * 2 1 4 4 C 1.52999 * 109.47583 * 119.99948 * 2 1 3 5 5 C 1.52993 * 109.47446 * 170.89577 * 4 2 1 6 6 C 1.53000 * 115.55231 * 66.88493 * 5 4 2 7 7 N 1.46498 * 109.46907 * 35.81517 * 6 5 4 8 8 C 1.34774 * 119.99768 * 178.78740 * 7 6 5 9 9 O 1.21586 * 120.00451 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00086 * 179.97438 * 8 7 6 11 11 C 1.47423 * 125.64322 * 359.95863 * 10 8 7 12 12 C 1.55128 * 104.94210 * 204.03779 * 11 10 8 13 13 C 1.55155 * 101.48340 * 323.22588 * 12 11 10 14 14 O 1.42910 * 110.72066 * 276.82816 * 13 12 11 15 15 C 1.50696 * 110.72158 * 153.73426 * 13 12 11 16 16 H 1.08001 * 120.00183 * 2.44018 * 15 13 12 17 17 C 1.37887 * 120.00011 * 182.16429 * 15 13 12 18 18 N 1.31514 * 119.99909 * 0.27198 * 17 15 13 19 19 Si 1.86792 * 119.99885 * 180.27573 * 17 15 13 20 20 H 1.48506 * 109.47339 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47497 * 119.99823 * 19 17 15 22 22 H 1.48505 * 109.47181 * 240.00133 * 19 17 15 23 23 C 1.47017 * 125.65110 * 180.02562 * 10 8 7 24 24 C 1.53006 * 117.51742 * 212.59053 * 5 4 2 25 25 C 1.53001 * 59.99954 * 107.47739 * 24 5 4 26 26 H 1.09001 * 109.47347 * 299.99463 * 1 2 3 27 27 H 1.09001 * 109.47447 * 60.00111 * 1 2 3 28 28 H 1.09007 * 109.47158 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47347 * 240.00537 * 2 1 3 30 30 H 1.09005 * 109.46971 * 73.72988 * 3 2 1 31 31 H 1.08997 * 109.47089 * 193.72743 * 3 2 1 32 32 H 1.08998 * 109.46642 * 313.72873 * 3 2 1 33 33 H 1.08998 * 109.46605 * 50.88942 * 4 2 1 34 34 H 1.09005 * 109.46972 * 290.89553 * 4 2 1 35 35 H 1.08996 * 109.47070 * 275.80845 * 6 5 4 36 36 H 1.09005 * 109.46865 * 155.81026 * 6 5 4 37 37 H 0.97003 * 119.99936 * 358.77949 * 7 6 5 38 38 H 1.08995 * 110.36931 * 322.99985 * 11 10 8 39 39 H 1.09001 * 110.36816 * 85.32907 * 11 10 8 40 40 H 1.08999 * 111.16492 * 205.13406 * 12 11 10 41 41 H 1.09001 * 110.93354 * 81.21408 * 12 11 10 42 42 H 0.96696 * 113.99988 * 177.56082 * 14 13 12 43 43 H 0.96996 * 119.99759 * 179.97438 * 18 17 15 44 44 H 1.08995 * 109.88409 * 59.48645 * 23 10 8 45 45 H 1.09003 * 109.88049 * 298.32287 * 23 10 8 46 46 H 1.09004 * 117.49683 * 214.96925 * 24 5 4 47 47 H 1.09005 * 117.49738 * 359.97438 * 24 5 4 48 48 H 1.08999 * 117.49638 * 252.50695 * 25 24 5 49 49 H 1.09001 * 117.49529 * 107.49563 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5529 -0.9219 1.1403 6 6 4.3926 0.3565 1.1792 7 7 3.7773 1.3172 2.0981 8 6 4.3602 2.5134 2.3121 9 8 5.3970 2.7950 1.7428 10 7 3.7938 3.3975 3.1572 11 6 2.5434 3.1873 3.9093 12 6 2.0103 4.6136 4.2057 13 6 3.3292 5.3887 4.4647 14 8 3.7637 5.2106 5.8144 15 6 3.1579 6.8525 4.1505 16 1 2.1957 7.2282 3.8351 17 6 4.2282 7.7134 4.2713 18 7 5.3999 7.2561 4.6555 19 14 4.0139 9.5293 3.8893 20 1 2.6096 9.7868 3.4806 21 1 4.3329 10.3305 5.0982 22 1 4.9289 9.9141 2.7847 23 6 4.3199 4.7317 3.4806 24 6 4.1474 -2.1775 1.7814 25 6 4.0517 -2.0683 0.2583 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8896 1.8811 0.9866 31 1 3.1023 1.4523 -0.2439 32 1 1.4913 2.0218 -0.7426 33 1 1.5500 -1.6911 1.3343 34 1 1.8156 -0.1221 2.1318 35 1 4.4417 0.7894 0.1801 36 1 5.3997 0.1193 1.5223 37 1 2.9503 1.0924 2.5525 38 1 1.8264 2.6312 3.3054 39 1 2.7455 2.6596 4.8414 40 1 1.3734 4.6198 5.0902 41 1 1.4819 5.0190 3.3428 42 1 4.6037 5.6444 6.0177 43 1 6.1529 7.8616 4.7400 44 1 4.3938 5.3310 2.5732 45 1 5.3005 4.6402 3.9477 46 1 5.1368 -2.0928 2.2310 47 1 3.4607 -2.8607 2.2814 48 1 3.3021 -2.6798 -0.2439 49 1 4.9782 -1.9119 -0.2942 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591982600.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:14 Heat of formation + Delta-G solvation = -55.685101 kcal Electronic energy + Delta-G solvation = -27520.456318 eV Core-core repulsion = 23869.299183 eV Total energy + Delta-G solvation = -3651.157135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.13196 -38.85171 -37.21114 -35.23785 -34.23034 -33.72863 -32.17101 -30.05334 -28.05590 -27.63627 -27.28078 -26.41658 -24.60537 -22.76043 -22.47920 -20.71182 -19.67089 -19.34508 -19.00008 -17.62861 -17.06982 -16.22222 -15.77443 -15.28326 -15.04914 -14.65350 -14.48899 -14.42408 -14.09190 -13.69487 -13.42980 -13.03409 -12.90832 -12.81143 -12.55009 -12.52002 -12.20814 -12.04027 -11.68072 -11.64209 -11.45218 -11.39048 -11.12050 -11.04056 -10.86875 -10.76373 -10.68985 -10.62092 -10.45726 -10.39221 -10.14643 -9.77218 -9.56248 -9.30994 -8.68454 -8.65900 -8.28877 -7.70779 -6.26762 -4.35085 3.12100 3.22276 3.30582 3.33872 3.55829 3.80382 4.28139 4.38401 4.46255 4.59877 4.63436 4.69852 4.92265 4.98900 5.01225 5.11236 5.38428 5.43575 5.52417 5.54228 5.56450 5.62576 5.65945 5.69897 5.71277 5.81315 5.83092 5.89214 5.89718 5.93937 6.01508 6.04414 6.11954 6.14177 6.30429 6.47091 6.52785 6.74393 6.83039 6.91154 7.02957 7.29331 7.35200 7.68405 7.75704 8.05229 8.57503 8.69157 9.18159 9.32928 9.42502 10.81132 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021205 B = 0.003459 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.114148 B = 8092.905122 C = 8450.602925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.157 4.157 4 C -0.076 4.076 5 C -0.137 4.137 6 C 0.177 3.823 7 N -0.746 5.746 8 C 0.715 3.285 9 O -0.599 6.599 10 N -0.630 5.630 11 C 0.104 3.896 12 C -0.115 4.115 13 C 0.248 3.752 14 O -0.586 6.586 15 C -0.537 4.537 16 H 0.067 0.933 17 C 0.070 3.930 18 N -0.894 5.894 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.123 3.877 24 C -0.172 4.172 25 C -0.165 4.165 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.393 0.607 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.384 0.616 43 H 0.270 0.730 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.096 0.904 47 H 0.094 0.906 48 H 0.096 0.904 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.437 -17.232 -6.642 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.214 4.214 4 C -0.114 4.114 5 C -0.137 4.137 6 C 0.053 3.947 7 N -0.406 5.406 8 C 0.417 3.583 9 O -0.478 6.478 10 N -0.367 5.367 11 C -0.020 4.020 12 C -0.153 4.153 13 C 0.207 3.793 14 O -0.395 6.395 15 C -0.575 4.575 16 H 0.085 0.915 17 C -0.133 4.133 18 N -0.533 5.533 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C 0.001 3.999 24 C -0.209 4.209 25 C -0.202 4.202 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.230 0.770 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.235 0.765 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.114 0.886 47 H 0.112 0.888 48 H 0.114 0.886 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.987 -17.336 -7.027 19.969 hybrid contribution 0.181 1.143 -0.024 1.158 sum -6.806 -16.193 -7.051 18.928 Atomic orbital electron populations 1.21863 0.95413 1.01264 1.01956 1.21059 0.95189 0.96862 0.97843 1.22268 1.02017 0.95038 1.02045 1.21196 0.91509 1.00525 0.98153 1.21678 0.95544 0.90250 1.06222 1.20663 0.94646 0.85677 0.93759 1.45308 1.29132 1.15928 1.50192 1.15505 0.83073 0.79827 0.79914 1.90883 1.24499 1.78256 1.54150 1.47923 1.25932 1.17963 1.44874 1.22250 0.85692 0.98971 0.95054 1.22756 0.98482 0.92867 1.01245 1.19498 0.87624 0.92469 0.79676 1.86085 1.45004 1.78447 1.29991 1.21554 0.96994 0.92201 1.46773 0.91512 1.25074 0.94866 0.99636 0.93698 1.69653 1.00935 1.35947 1.46785 0.86354 0.78399 0.84102 0.78079 1.19607 1.20759 1.20768 1.22848 0.98692 0.78457 0.99911 1.23152 1.02517 0.99709 0.95522 1.22978 1.03032 1.00755 0.93479 0.92616 0.92715 0.93062 0.91290 0.92338 0.91398 0.93443 0.91606 0.91611 0.90958 0.92005 0.76982 0.92844 0.92130 0.90616 0.90583 0.76487 0.92028 0.91873 0.92045 0.88570 0.88783 0.88599 0.88562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.14 37.15 0.34 -0.87 16 2 C -0.09 -0.83 2.89 -90.62 -0.26 -1.09 16 3 C -0.16 -1.81 7.64 37.16 0.28 -1.53 16 4 C -0.08 -0.66 4.37 -26.73 -0.12 -0.78 16 5 C -0.14 -1.29 1.91 -154.51 -0.30 -1.59 16 6 C 0.18 2.28 4.63 -4.04 -0.02 2.26 16 7 N -0.75 -11.04 3.19 -65.23 -0.21 -11.25 16 8 C 0.71 14.42 8.49 -86.92 -0.74 13.69 16 9 O -0.60 -14.52 16.67 5.29 0.09 -14.43 16 10 N -0.63 -13.04 3.33 -176.11 -0.59 -13.63 16 11 C 0.10 1.81 6.57 -2.41 -0.02 1.79 16 12 C -0.12 -2.28 6.25 -24.46 -0.15 -2.43 16 13 C 0.25 5.99 0.85 -89.94 -0.08 5.91 16 14 O -0.59 -14.78 13.08 -35.23 -0.46 -15.24 16 15 C -0.54 -14.05 8.11 -34.44 -0.28 -14.33 16 16 H 0.07 1.72 7.77 -52.49 -0.41 1.31 16 17 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 18 N -0.89 -23.97 10.97 55.43 0.61 -23.36 16 19 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.12 3.02 5.39 -3.07 -0.02 3.00 16 24 C -0.17 -1.46 9.86 -26.73 -0.26 -1.72 16 25 C -0.16 -1.32 9.96 -26.73 -0.27 -1.59 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.62 8.11 -51.93 -0.42 0.19 16 30 H 0.06 0.74 6.31 -51.93 -0.33 0.41 16 31 H 0.07 0.89 4.76 -51.93 -0.25 0.64 16 32 H 0.05 0.54 8.07 -51.93 -0.42 0.12 16 33 H 0.07 0.50 8.06 -51.93 -0.42 0.08 16 34 H 0.07 0.60 6.00 -51.93 -0.31 0.29 16 35 H 0.07 0.99 5.94 -51.93 -0.31 0.68 16 36 H 0.06 0.87 7.91 -51.93 -0.41 0.46 16 37 H 0.39 5.06 4.10 -40.82 -0.17 4.89 16 38 H 0.05 0.75 7.30 -51.93 -0.38 0.37 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 42 H 0.38 10.00 7.21 45.56 0.33 10.32 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.06 1.69 7.81 -51.93 -0.41 1.29 16 45 H 0.06 1.66 8.01 -51.93 -0.42 1.24 16 46 H 0.10 0.86 8.06 -51.93 -0.42 0.44 16 47 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 376.32 15.07 5.67 5.67 Total: -1.00 -29.57 376.32 -9.54 -39.12 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -7.66 Total: 15.13 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -1.97 Total: 2.47 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.19 Total: -48.24 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.37 Total: -29.67 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.57 -9.54 -39.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591982600.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.566 kcal (2) G-P(sol) polarization free energy of solvation -29.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds