Wall clock time and date at job start Fri Apr 10 2020 22:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47144 * 2 1 4 4 C 1.52999 * 109.47583 * 119.99948 * 2 1 3 5 5 C 1.52993 * 109.47446 * 170.89577 * 4 2 1 6 6 C 1.53000 * 115.55231 * 66.88493 * 5 4 2 7 7 N 1.46498 * 109.46907 * 35.81517 * 6 5 4 8 8 C 1.34774 * 119.99768 * 178.78740 * 7 6 5 9 9 O 1.21586 * 120.00451 * 359.97438 * 8 7 6 10 10 N 1.34781 * 120.00086 * 179.97438 * 8 7 6 11 11 C 1.47423 * 125.64322 * 359.95863 * 10 8 7 12 12 C 1.55128 * 104.94210 * 204.03779 * 11 10 8 13 13 C 1.55155 * 101.48340 * 323.22588 * 12 11 10 14 14 O 1.42910 * 110.72066 * 276.82816 * 13 12 11 15 15 C 1.50696 * 110.72158 * 153.73426 * 13 12 11 16 16 H 1.08001 * 120.00183 * 2.44018 * 15 13 12 17 17 C 1.37887 * 120.00011 * 182.16429 * 15 13 12 18 18 N 1.31514 * 119.99909 * 0.27198 * 17 15 13 19 19 Si 1.86792 * 119.99885 * 180.27573 * 17 15 13 20 20 H 1.48506 * 109.47339 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47497 * 119.99823 * 19 17 15 22 22 H 1.48505 * 109.47181 * 240.00133 * 19 17 15 23 23 C 1.47017 * 125.65110 * 180.02562 * 10 8 7 24 24 C 1.53006 * 117.51742 * 212.59053 * 5 4 2 25 25 C 1.53001 * 59.99954 * 107.47739 * 24 5 4 26 26 H 1.09001 * 109.47347 * 299.99463 * 1 2 3 27 27 H 1.09001 * 109.47447 * 60.00111 * 1 2 3 28 28 H 1.09007 * 109.47158 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47347 * 240.00537 * 2 1 3 30 30 H 1.09005 * 109.46971 * 73.72988 * 3 2 1 31 31 H 1.08997 * 109.47089 * 193.72743 * 3 2 1 32 32 H 1.08998 * 109.46642 * 313.72873 * 3 2 1 33 33 H 1.08998 * 109.46605 * 50.88942 * 4 2 1 34 34 H 1.09005 * 109.46972 * 290.89553 * 4 2 1 35 35 H 1.08996 * 109.47070 * 275.80845 * 6 5 4 36 36 H 1.09005 * 109.46865 * 155.81026 * 6 5 4 37 37 H 0.97003 * 119.99936 * 358.77949 * 7 6 5 38 38 H 1.08995 * 110.36931 * 322.99985 * 11 10 8 39 39 H 1.09001 * 110.36816 * 85.32907 * 11 10 8 40 40 H 1.08999 * 111.16492 * 205.13406 * 12 11 10 41 41 H 1.09001 * 110.93354 * 81.21408 * 12 11 10 42 42 H 0.96696 * 113.99988 * 177.56082 * 14 13 12 43 43 H 0.96996 * 119.99759 * 179.97438 * 18 17 15 44 44 H 1.08995 * 109.88409 * 59.48645 * 23 10 8 45 45 H 1.09003 * 109.88049 * 298.32287 * 23 10 8 46 46 H 1.09004 * 117.49683 * 214.96925 * 24 5 4 47 47 H 1.09005 * 117.49738 * 359.97438 * 24 5 4 48 48 H 1.08999 * 117.49638 * 252.50695 * 25 24 5 49 49 H 1.09001 * 117.49529 * 107.49563 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5529 -0.9219 1.1403 6 6 4.3926 0.3565 1.1792 7 7 3.7773 1.3172 2.0981 8 6 4.3602 2.5134 2.3121 9 8 5.3970 2.7950 1.7428 10 7 3.7938 3.3975 3.1572 11 6 2.5434 3.1873 3.9093 12 6 2.0103 4.6136 4.2057 13 6 3.3292 5.3887 4.4647 14 8 3.7637 5.2106 5.8144 15 6 3.1579 6.8525 4.1505 16 1 2.1957 7.2282 3.8351 17 6 4.2282 7.7134 4.2713 18 7 5.3999 7.2561 4.6555 19 14 4.0139 9.5293 3.8893 20 1 2.6096 9.7868 3.4806 21 1 4.3329 10.3305 5.0982 22 1 4.9289 9.9141 2.7847 23 6 4.3199 4.7317 3.4806 24 6 4.1474 -2.1775 1.7814 25 6 4.0517 -2.0683 0.2583 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8896 1.8811 0.9866 31 1 3.1023 1.4523 -0.2439 32 1 1.4913 2.0218 -0.7426 33 1 1.5500 -1.6911 1.3343 34 1 1.8156 -0.1221 2.1318 35 1 4.4417 0.7894 0.1801 36 1 5.3997 0.1193 1.5223 37 1 2.9503 1.0924 2.5525 38 1 1.8264 2.6312 3.3054 39 1 2.7455 2.6596 4.8414 40 1 1.3734 4.6198 5.0902 41 1 1.4819 5.0190 3.3428 42 1 4.6037 5.6444 6.0177 43 1 6.1529 7.8616 4.7400 44 1 4.3938 5.3310 2.5732 45 1 5.3005 4.6402 3.9477 46 1 5.1368 -2.0928 2.2310 47 1 3.4607 -2.8607 2.2814 48 1 3.3021 -2.6798 -0.2439 49 1 4.9782 -1.9119 -0.2942 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591982600.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:13 Heat of formation + Delta-G solvation = -73.824364 kcal Electronic energy + Delta-G solvation = -27521.242895 eV Core-core repulsion = 23869.299183 eV Total energy + Delta-G solvation = -3651.943712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.49496 -40.04030 -38.88404 -36.11227 -35.92428 -35.08841 -34.19713 -31.74028 -29.68994 -28.64449 -28.20997 -27.56190 -26.34397 -24.17349 -23.33042 -21.57400 -21.45789 -20.82239 -19.88650 -19.21432 -18.84405 -17.52022 -17.11028 -16.85986 -16.65955 -16.14533 -15.82908 -15.34487 -15.16071 -14.89533 -14.78647 -14.70642 -14.56293 -13.99317 -13.86482 -13.50237 -13.48806 -13.29842 -13.14803 -12.97336 -12.87139 -12.53547 -12.32759 -12.31479 -12.25206 -12.19872 -12.10061 -11.91240 -11.58892 -11.48711 -11.32798 -11.18792 -11.04549 -10.65357 -10.56336 -10.29012 -10.08879 -9.35955 -8.26733 -6.42453 1.39841 1.43173 1.53906 1.67473 2.16038 2.37751 2.81256 3.00140 3.10755 3.64668 3.79251 3.81557 3.88737 3.98756 4.06937 4.15618 4.17045 4.23907 4.36383 4.38930 4.56068 4.63509 4.69866 4.72104 4.82032 4.83753 4.87713 4.94113 4.98706 5.04461 5.08041 5.12136 5.12767 5.13579 5.25164 5.30233 5.31646 5.36216 5.39767 5.48547 5.50052 5.55816 5.58860 5.75361 6.02691 6.18566 6.64647 7.07081 7.28685 7.36194 7.58186 8.79731 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021205 B = 0.003459 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.114148 B = 8092.905122 C = 8450.602925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.155 4.155 4 C -0.072 4.072 5 C -0.144 4.144 6 C 0.176 3.824 7 N -0.720 5.720 8 C 0.710 3.290 9 O -0.647 6.647 10 N -0.635 5.635 11 C 0.108 3.892 12 C -0.109 4.109 13 C 0.234 3.766 14 O -0.588 6.588 15 C -0.557 4.557 16 H 0.068 0.932 17 C 0.025 3.975 18 N -0.917 5.917 19 Si 0.964 3.036 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.285 1.285 23 C 0.142 3.858 24 C -0.168 4.168 25 C -0.153 4.153 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.046 0.954 37 H 0.407 0.593 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.376 0.624 43 H 0.270 0.730 44 H 0.028 0.972 45 H 0.024 0.976 46 H 0.087 0.913 47 H 0.112 0.888 48 H 0.115 0.885 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.925 -19.237 -6.896 22.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 C -0.212 4.212 4 C -0.110 4.110 5 C -0.145 4.145 6 C 0.052 3.948 7 N -0.379 5.379 8 C 0.412 3.588 9 O -0.530 6.530 10 N -0.372 5.372 11 C -0.013 4.013 12 C -0.147 4.147 13 C 0.193 3.807 14 O -0.396 6.396 15 C -0.595 4.595 16 H 0.086 0.914 17 C -0.176 4.176 18 N -0.557 5.557 19 Si 0.789 3.211 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.211 1.211 23 C 0.018 3.982 24 C -0.204 4.204 25 C -0.191 4.191 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.246 0.754 38 H 0.115 0.885 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.226 0.774 43 H 0.079 0.921 44 H 0.047 0.953 45 H 0.043 0.957 46 H 0.106 0.894 47 H 0.130 0.870 48 H 0.133 0.867 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.537 -19.398 -7.272 22.806 hybrid contribution 0.999 1.738 0.017 2.005 sum -8.538 -17.659 -7.255 20.914 Atomic orbital electron populations 1.21841 0.94373 1.02262 1.01801 1.21012 0.95939 0.94947 0.98441 1.22238 1.00808 0.97064 1.01114 1.21198 0.90621 1.01564 0.97588 1.21549 0.95692 0.88818 1.08431 1.20758 0.94759 0.86759 0.92488 1.45117 1.28958 1.14137 1.49647 1.15731 0.82676 0.80947 0.79427 1.90843 1.26792 1.79439 1.55887 1.47848 1.27049 1.16799 1.45457 1.22406 0.84790 0.98238 0.95908 1.22749 0.96399 0.93324 1.02236 1.19706 0.89666 0.92463 0.78852 1.86074 1.44524 1.78302 1.30702 1.21890 0.97112 0.93548 1.46922 0.91383 1.25828 0.94636 1.03527 0.93592 1.69760 1.01463 1.37079 1.47362 0.85416 0.78462 0.79482 0.77737 1.18780 1.20235 1.21084 1.22332 0.97468 0.80271 0.98102 1.23216 1.02373 0.98833 0.96027 1.23073 1.03285 0.99332 0.93385 0.92747 0.92974 0.91472 0.90808 0.93480 0.93393 0.93743 0.89347 0.91885 0.92023 0.93536 0.75381 0.88477 0.91214 0.89028 0.89875 0.77387 0.92071 0.95346 0.95727 0.89435 0.87004 0.86657 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.14 71.98 0.66 -1.27 16 2 C -0.08 -1.32 2.89 -10.79 -0.03 -1.35 16 3 C -0.16 -3.42 7.64 71.98 0.55 -2.87 16 4 C -0.07 -1.02 4.37 30.59 0.13 -0.88 16 5 C -0.14 -2.42 1.91 -52.18 -0.10 -2.52 16 6 C 0.18 4.48 4.63 86.38 0.40 4.88 16 7 N -0.72 -20.84 3.19 -478.54 -1.53 -22.36 16 8 C 0.71 29.17 8.49 179.05 1.52 30.69 16 9 O -0.65 -32.80 16.67 -3.99 -0.07 -32.87 16 10 N -0.63 -26.51 3.33 -829.34 -2.76 -29.27 16 11 C 0.11 3.56 6.57 86.93 0.57 4.13 16 12 C -0.11 -4.14 6.25 32.06 0.20 -3.94 16 13 C 0.23 11.42 0.85 -10.35 -0.01 11.41 16 14 O -0.59 -30.06 13.08 -148.98 -1.95 -32.01 16 15 C -0.56 -29.46 8.11 25.60 0.21 -29.25 16 16 H 0.07 3.50 7.77 -2.91 -0.02 3.47 16 17 C 0.02 1.32 5.28 84.66 0.45 1.76 16 18 N -0.92 -50.75 10.97 21.45 0.24 -50.51 16 19 Si 0.96 42.53 29.54 68.60 2.03 44.56 16 20 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 23 C 0.14 7.27 5.39 86.73 0.47 7.74 16 24 C -0.17 -2.39 9.86 30.60 0.30 -2.09 16 25 C -0.15 -2.04 9.96 30.60 0.30 -1.73 16 26 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.07 1.11 8.11 -2.39 -0.02 1.09 16 30 H 0.05 1.11 6.31 -2.38 -0.02 1.10 16 31 H 0.05 1.25 4.76 -2.39 -0.01 1.23 16 32 H 0.04 0.98 8.07 -2.39 -0.02 0.96 16 33 H 0.09 0.92 8.06 -2.39 -0.02 0.90 16 34 H 0.06 0.92 6.00 -2.38 -0.01 0.91 16 35 H 0.06 1.73 5.94 -2.39 -0.01 1.71 16 36 H 0.05 1.33 7.91 -2.38 -0.02 1.31 16 37 H 0.41 9.61 4.10 -92.71 -0.38 9.23 16 38 H 0.10 2.36 7.30 -2.39 -0.02 2.35 16 39 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.08 3.02 8.03 -2.39 -0.02 3.00 16 42 H 0.38 20.28 7.21 -74.06 -0.53 19.74 16 43 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 44 H 0.03 1.61 7.81 -2.39 -0.02 1.59 16 45 H 0.02 1.40 8.01 -2.39 -0.02 1.38 16 46 H 0.09 1.42 8.06 -2.39 -0.02 1.40 16 47 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 48 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -67.05 376.32 1.61 -65.44 By element: Atomic # 1 Polarization: 42.28 SS G_CDS: 0.03 Total: 42.32 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 5.62 Total: 14.71 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -4.05 Total: -102.15 kcal Atomic # 8 Polarization: -62.86 SS G_CDS: -2.01 Total: -64.88 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -67.05 1.61 -65.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591982600.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.389 kcal (2) G-P(sol) polarization free energy of solvation -67.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds